BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04850.1
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317350 jgi|Araly1|317350|fgenesh1_pm.C_scaffold_3000366 1127 0.0
> Ahg317350 jgi|Araly1|317350|fgenesh1_pm.C_scaffold_3000366
Length=1836
Score = 1127 bits (610), Expect = 0.0
Identities = 772/848 (91%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 1200 TTCTACCCATTCCACGAACGATTGGCCTGCACTTGAATGGTTTCGTGAACCCCTCAGTCT 1259
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TTCTACCCATACCACGAACAATTGGCCTGCACTTGAATGGTTTCGTGAACCCCTCAGTCT 1054
Query 1260 CAAGTGGCCGaaaaaaaaaaaaaaTCAAAGATGGTCAGGCTTTTCCTTCTACAACATTTC 1319
||| ||||||||||||||||||| |||||||||||| || ||||||| ||||||||||||
Sbjct 1055 CAAATGGCCGAAAAAAAAAAAAATTCAAAGATGGTCGGGTTTTTCCTCCTACAACATTTC 1114
Query 1320 ATTATAATATTGAAGATGAATTCTCAACTCCTGTCTCCACAAAAAGAGATTTGGTGGTAT 1379
|| |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1115 ATCATAATAATGAAGATGAATTCTCAACTCCTGTCTCCACAAAAAGAGA-TT--TGGTAT 1171
Query 1380 TCAGTGATGTCAAAATCATGGAGCCTCCTGAGAGATCAGTGGAAGGAGAATGTTTTGACC 1439
|||||| |||||||||||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 1172 TCAGTGGTGTCAAAATCATGGAGGCTACTGAGAGATCAATGGAAGGAGAATGTATTGACC 1231
Query 1440 AACTCATGGCAATGGAAAATAGGCAATTGTCTCAAGGACTTGACGAACTTGGCAGCTGTA 1499
||| |||||| || || || |||||||||||||||||||||||| |||||||||||||||
Sbjct 1232 AACACATGGCTATAGAGAACAGGCAATTGTCTCAAGGACTTGACAAACTTGGCAGCTGTA 1291
Query 1500 AGCGCTGTAAATGTAGGAAATCACAATGCTTGAAGCTGTATTGTGAATGTTTTTCCGCTG 1559
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1292 AGCGCTGTAAATGTAAGAAATCACAATGCTTGAAGCTGTATTGTGAATGTTTTGCTGCTG 1351
Query 1560 GTCTATTCTGTGGTGAACCTTGTTCATGTCAAAATTGTTTCAATAAGCCCATTCATGAAG 1619
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GTCTATACTGTGTTGAACCTTGTTCATGTCAAAATTGTTTCAATAAGCCCATTCATGAAG 1411
Query 1620 ACCTAGTTATGAAAAGTCGTGAAGTGATTAAAGCCCGCAACCCATTAGCTTTTGCTCCAA 1679
|||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1412 ACCTGGTTATGAAAAGTCGTGAAGTGATTGAAGCTCGCAACCCATTAGCTTTTGCTCCAA 1471
Query 1680 AAGTGGTCTCAACTTCTGATACTGTTATAGATTTATGGGTCGAGAACAGCAAGACTCCTG 1739
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1472 AAGTGGTCTCCACTTCTGATACTGCTATAGATTTATGGGTCGAGAACAACAAGACTCCTG 1531
Query 1740 CTTCAGCAAGACACAAAAGAGGATGCAACTGCAGGAAATCAGGCTGCTCAAAGAAATATT 1799
||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 1532 CTTCAGCAAGACACACAAGAGGATGCAACTGCAGGAAATCCGGCTGCTTAAAGAAATACT 1591
Query 1800 GTGAATGCT-TTATGATGGGCGTTGGATGCTCCTCTAACTGCAGATGCATGGGATGCAAG 1858
|||||||| || ||||||||||| |||||||||| | ||| |||||||| |||||||||
Sbjct 1592 GTGAATGCAATT-TGATGGGCGTTCGATGCTCCTCGAGCTGTAGATGCATAGGATGCAAG 1650
Query 1859 AATACTTTTGGTCACACAAATGAGCAATGTGCGGGAGATTCTGATGTGGTAACAATCAAT 1918
||| |||||||||| || |||| ||||||||||||| ||||||| ||||||| ||||
Sbjct 1651 AATGTTTTTGGTCACCCAGATGAAAAATGTGCGGGAGAATCTGATGCAGTAACAAACAAT 1710
Query 1919 GATGAAGCTAAACACTATGGTGATCATGGCGATGCTTCAAGGCAAAACGAAGAAATCTTA 1978
|||||||||||||| | || || | | || | |||||||||||||||||| || |
Sbjct 1711 GATGAAGCTAAACA-T-TG-TGGT---G---AT--T-CAAGGCAAAACGAAGAAACCTCA 1758
Query 1979 ACCAGTGAGAGAA--A-CCGCTTGTTGCTCCCTGGTTCTGTAGCATTCCGTTCCTTAACA 2035
| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1759 AACAGTGAGAGAAGGAACCGCTTGTTGCTCCCAGGTTCTGTAGCATTCCGTTCCTTAACA 1818
Query 2036 TCACTGTC 2043
||||||||
Sbjct 1819 TCACTGTC 1826
Score = 1014 bits (549), Expect = 0.0
Identities = 806/923 (87%), Gaps = 46/923 (5%)
Strand=Plus/Plus
Query 143 ATGGATACACCAGATAAGAACCGCATCTCCGCCGTTTCCTT-CTGCAACTTCGAGGATTC 201
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||
Sbjct 1 ATGGATACACCAGATAAGAACCGCATCTCCGCCGTTTCCTTGC-GCAACTTTGAGTATTC 59
Query 202 TCCAGTTTTTCAATATATTAATGATCTCTCTCCAATAGAGCCAGTGAAGCCAGGACGCCC 261
|||||||||||||||||||||||| ||||| |||||||||||||| || |||| || |||
Sbjct 60 TCCAGTTTTTCAATATATTAATGAACTCTCACCAATAGAGCCAGTAAAACCAGCACCCCC 119
Query 262 AGAGAATATCTTGCACTCACTGGTTTTTACATCTCCATCATCATCATCATCTCTATTTTG 321
||| ||||||||||||||||||| ||||||||||||||||| ||| | || | || |
Sbjct 120 AGAAAATATCTTGCACTCACTGGCTTTTACATCTCCATCAT-ATC-T-AT-T-TA----G 170
Query 322 TTCCCCGCAGTTAAACTCTTACCGAGATTCCAGATTTTTCATCAAAAGGCATCGTTCTCT 381
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 171 CTCCCCGCAGTTAACCTCTTACCGAGATTCCAGATTTTCCATCAAAAGGCATCGTTCTCT 230
Query 382 AGATCTATCGAGT---CCAGTAGTCCTCATCGGTGAGACTCTAAAAAACTCACCAGA--- 435
||||||||| ||| ||| |||| ||||| ||||||||| |||||| |||||||||
Sbjct 231 AGATCTATCTAGTCCACCACTAGTTCTCATTGGTGAGACTGTAAAAACCTCACCAGATGC 290
Query 436 T------GC--TT----TAT---G-----G-GAGGAGAAGCTAAAGTGTAGGCCTGAGA- 473
| || || ||| | | |||||| ||||| |||||||||||| |
Sbjct 291 TCAGGAAGCTGTTAAGATATCAGGACTATGTGAGGAGCAGCTACAGTGTAGGCCTG-CAC 349
Query 474 AGTTGGAAAATGTTTCTGAACCCAAGCCATTTAAGGAGCAGATAAGCTTAGCAATTGAGT 533
|| ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 350 AGCTGGCAAATGTTTCTGAAACTAAGCCATTTAAGGAGCAGATAAGCTTAGCAATTGAGT 409
Query 534 TGGCGAATTCATTGAAACACGGAA-GAGATGGATGTGATATTCAGATGGTTTCTTGTGAT 592
||||||||||||||||||||| || | ||||||||||||| ||| |||||||||||||||
Sbjct 410 TGGCGAATTCATTGAAACACGCAATG-GATGGATGTGATACTCAAATGGTTTCTTGTGAT 468
Query 593 GAAGTACCTATGGATGCTGATGATGAAATAGGAAGCGGTGGTGGATCCAGAGAGCTGTCT 652
|||||||| ||||||||||| ||||| ||||| || |||||||||| ||||||||||||
Sbjct 469 GAAGTACCAATGGATGCTGAAAATGAATTAGGAGGCTGTGGTGGATCGAGAGAGCTGTCT 528
Query 653 GATGAGTTATGTAGACAGTCTTTTGATCCACTTGACTTTGATGCTGATTCAGATGGAGTA 712
||||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||
Sbjct 529 GATGAGTTATGTAGACACCCTATTGATCCACGTGACTTTGATGATGATTCAGATGGAGTA 588
Query 713 CTTCACACTGATGAAATGGAAGCTGAGAGTGGGTTTGGTAAAGAAGTAATAATGTTTGAT 772
| ||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 589 CATCAAACTGAAGAAATGGAAGCTGAGAGTGGTTTTGGTCCAGAAGTAATAATGTTTGAT 648
Query 773 GTTGCTGATATCCAGAACTATGAGCAACAGATTCCAAGGACCACAGATCCTAGATTTTAT 832
||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 649 GTTGCTGGTATCCAGAACAATGAGCAACAGATTCCAAGGACCGCAGATCCTAGATTTTAT 708
Query 833 TCTCTTGCTTCTGAGCCTCAACAGTTTTCTATCTACTGTAATAACTCAAATTATGT-CGA 891
||||||||||||| |||||| |||||||||||| |||||||||||| |||| |
Sbjct 709 TCTCTTGCTTCTGTGCCTCAGCAGTTTTCTATCCGTTGTAATAACTCAGCGAATGTACTT 768
Query 892 AGAGCG-GGAAGGTTCGTGCAGTGTACAAGTTGCAGCTGGAGCTCCAGACATTAATCTCA 950
|||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 769 -GAGCCTGGA-GGTTCTTGCAGTGTACAAGTTGCAGCTGGAGCTCCAGACATTACTCTCA 826
Query 951 GTTGTTCCTCCAAGGTAGCAGCTATTGATTCAACTGCCGAAGCTGAAGACAAGGAAGATA 1010
| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 827 GCAGTTCCTCCAAAGTAGCAGCTATTGTTTCAACTGCTGAAGCTGAAGACAAGGAAGATA 886
Query 1011 AAGACCTTCAGCCCAGTGGCAAG 1033
||||||| ||||||||| |||||
Sbjct 887 AAGACCTACAGCCCAGTCGCAAG 909
Score = 95.3 bits (51), Expect = 2e-18
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1089 GGATACCTTTGCGTGATTCTACAAATGATCTTCCTCTTGATTCTACCTCTA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GGATACCTTTGCGTGATTCTACAAATGATCTTCCTCTTGATTCTACCTCTA 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89854887955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5