BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04860.1 Length=1437 Score E Sequences producing significant alignments: (Bits) Value Ahg477757 jgi|Araly1|477757|fgenesh2_kg.3__458__AT3G04860.1 1840 0.0 Ahg489643 jgi|Araly1|489643|fgenesh2_kg.6__2777__AT5G28150.1 830 0.0 > Ahg477757 jgi|Araly1|477757|fgenesh2_kg.3__458__AT3G04860.1 Length=1305 Score = 1840 bits (996), Expect = 0.0 Identities = 1139/1206 (94%), Gaps = 17/1206 (1%) Strand=Plus/Plus Query 103 tcattctctcCTTGGTTGATGAAACTGGATCGATTTGATAGAACCCAGATCAAATCTGTT 162 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 62 TCATTCTTTCCTTGGTTGATGAAACTGGATCGATTTGATAAAACCCAGATCAAATCTGTT 121 Query 163 GACATTTTTCCAGATTTCGATGCTTTTTTGAGATTGGGTTTCTCTTTCTTTTG-ATGAAA 221 |||||||||||| |||||||||||||||||||||||||||||||||||||||| || || Sbjct 122 GACATTTTTCCAAATTTCGATGCTTTTTTGAGATTGGGTTTCTCTTTCTTTTGAAT-TAA 180 Query 222 CTTATCA-C--TTTCAGCGTTGCCCAGTTTTGGCCACAAGGTGTTTGTTGAAATTCCGga 278 ||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 181 CTTATCATCAGTTTCAGCGTTGCGCAGTTTTGGCCACAAAGTGTTTGTTGAAATTCC--T 238 Query 279 gagagagagaAGCTCGAAATTGGGAATTCTGTAAGGaaaaaaaaaTGAGAGATTTTCCTT 338 |||||||||||||| |||||||||||||| |||| | |||||||||||||| |||| Sbjct 239 GAGAGAGAGAAGCTGGAAATTGGGAATTCCGTAA-G-----AAAATGAGAGATTTCCCTT 292 Query 339 CTTGCTCTGGTGAAAATGGTGTTCAGATTGCGGACTCTTCGTCTTCCTCGAGCGCTGGAA 398 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||||| Sbjct 293 CTTGCTCCGGTGAAAATGGCGTCCAGATTGCGGATTCTTCGTCTTCATCGAGCGCTGGAA 352 Query 399 GAAATGCTCAGAATTTGGTAATATGCATCTACCGTTGCCGCATCCGAGGTAGGACTTGCT 458 ||||||||||||||||||| || || |||||||||||||||||| ||||||||||||| | Sbjct 353 GAAATGCTCAGAATTTGGTCATTTGTATCTACCGTTGCCGCATCAGAGGTAGGACTTG-T 411 Query 459 -TGATCACAGTCACATGGACTAAGAATCTGATGGGTCAGTGTGTTACCGTGGGGGTTGAT 517 |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 412 ATGATCACAGTCACATGGACTAAGAATCTTATGGGTCAGTGTGTTACCGTGGGAGTTGAT 471 Query 518 GATTCTTGCAACCGAAGTCTGTGTAAAGTCGAGATTAAGCCGTGGCTCTTCACTAAACGA 577 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 472 GATTCTTGCAACCGAAGTCTGTGTAAAGTTGAGATTAAGCCGTGGCTCTTCACTAAACGA 531 Query 578 AAAGGGTCCAAGACTCTAGAGGCGTATGCCTGTAATATCGATGTTTTCTGGGATCTCTCG 637 | ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 532 AGAGGGTCCAAAAGTCTAGAGGCGTATGCCTGTAGTATCGATGTTTTCTGGGATCTCTCG 591 Query 638 TCTGCTAAATTTGGATCCAGCCCTGAACCTTTAGGAGGGTTCTATGTTGGAGTTGTTGTT 697 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 592 TCTGCTAAATTCGGATCCAGCCCTGAACCTTTAGGAGGGTTCTATGTTGGAATTGTTGTG 651 Query 698 GACAAAGAGATGGTTCTTCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAAAAGACGAAT 757 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 652 GACAAAGAAATGGTTCTTCTTCTTGGTGATATGAAGAAAGAGGCTTTTAAAAAGACGAAT 711 Query 758 GCTGCACCTTCTTCATCTTTAGGTGCTGTGTTCATTGCTAAGAAAGAGCATGTCTTTGGC 817 || ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 712 GCCGCACCTTCTTCATCTCTAGGTGCTCTGTTCATTGCTAAGAAAGAGCATGTCTTTGGC 771 Query 818 AAGAGAACGTTTGCAACTAAAGCTCAGTTTTCAGGTGATGGCAAAACTCATGATCTTGTG 877 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 772 AAGAGAACGTTTGCAACTAAAGCTCAATTTTCAGGTGATGGCAAAACTCATGATCTTGTG 831 Query 878 ATCGAGTGTGACACTAGTCTCAGTGATCCTTGTCTCATTGTTCGTGTCGATGGAAAGATC 937 ||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||| | Sbjct 832 ATCGAATGTGACACCAGTATCAGTGATCCTTGTCTCATTGTTCGTGTTGATGGAAAGA-C 890 Query 938 TT-GATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAACGATACCATAATTGTCAA 996 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 891 TTTGATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAACGATACCATAATCGTCAA 950 Query 997 TAGAATCTCTGTGGAAGTTCTCTGGGATGTCCACAGTTGGTTCTTTGGGTTGCCATCATC 1056 ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 951 TAGGATCTCTGTGGAAGTCCTCTGGGATGTCCACAGTTGGTTCTTTGGGATGCCATCATC 1010 Query 1057 ACCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTTGAAAAGACCTGGTCTTT 1116 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1011 TCCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTTGAAAAGACTTGGTCTTT 1070 Query 1117 CACACAGGTCCCCACGAGCTCAAAATCTCAAAGTTTTGGGTTTTCATTGATTCTGTATGC 1176 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1071 CACGCAGGTCCCCACGAGCTCGAAATCTCAAAGTTTTGGGTTTTCATTGATTCTGTACGC 1130 Query 1177 TTGGAAGAACGAGTAGAGAAGAAGAGTTTTGAGAGTTCTTTTGTTTCTCTTGAGTGCTAA 1236 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1131 TTGGAAGAACGAGTAGAGAAGAAGAGTTTTGAGAGTTCTTTTCTTTCTCTTGAGTGCTAA 1190 Query 1237 CTAAAGGTTAAAAAGGAACTGTTGATTCTTGTCAATTTATTTTATCATATGATCAATTGG 1296 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1191 CTAAAGGTTAAAAAGGAACTGTTGATTCTTGCCAATTTATTTTATCATATGATCAATTGG 1250 Query 1297 TTTCAA 1302 |||||| Sbjct 1251 TTTCAA 1256 > Ahg489643 jgi|Araly1|489643|fgenesh2_kg.6__2777__AT5G28150.1 Length=1429 Score = 830 bits (449), Expect = 0.0 Identities = 742/880 (84%), Gaps = 33/880 (4%) Strand=Plus/Plus Query 329 GATTTTCCTTCTTGCTCTGGTGAAAATGGTGTTC-AGATTGCGGACTCTTCGTCTTCCTC 387 |||||||||||||||| ||||||||||||||||| || | ||||| || ||||||| | | Sbjct 286 GATTTTCCTTCTTGCTTTGGTGAAAATGGTGTTCAAG-TAGCGGATTCATCGTCTT-C-C 342 Query 388 GAGCGCT-GGAAGAAATGCTCAGAATTTGG-TAATATGCATCTACC-GTTGCCGCATCCG 444 | | || |||| ||||||||||||||||| || | || ||||||| | || || || || Sbjct 343 -AACTCTGGGAA-AAATGCTCAGAATTTGGTTACT-TGTATCTACCAG-TGTCGAATTCG 398 Query 445 AGGTAGGACTTGCTTGATCACAGTCACATGGACTAAGAATCTGATGGGTCAGTGTGTTAC 504 || || | ||| |||||||| || ||||||||||||||| |||||||||| |||| || Sbjct 399 TGGAAGAAATTGTTTGATCACTGTGACATGGACTAAGAATTTGATGGGTCAAAGTGTAAC 458 Query 505 CGTGGGGGTTGATGATTCTTGCAACCGAAGTCTGTGTAAAGTCGAGATTAAGCCGTGGCT 564 ||| || |||||||||||||| |||| |||| |||||||||||||||||||||||||| | Sbjct 459 CGTTGGTGTTGATGATTCTTGTAACCAAAGTTTGTGTAAAGTCGAGATTAAGCCGTGGTT 518 Query 565 CTTCACTAAACGAAAAGGGTCCAAGACTCTAGAGGCGTATGCCTGTAATATCGATGTTTT 624 ||||||||||| |||||||| |||| | ||||||||||| | ||||||||||||||||| Sbjct 519 GTTCACTAAACGGAAAGGGTCTAAGAGTTTAGAGGCGTATTCGTGTAATATCGATGTTTT 578 Query 625 CTGGGATCTCTCGTCTGCTAAATTTGGATCCA-GCCCTGAACCTTTAGGAGGGTTCTATG 683 |||||||| |||||||| |||||||||| || | |||||| |||| ||||| ||||||| Sbjct 579 TTGGGATCTTTCGTCTGCGAAATTTGGAT-CAGGTCCTGAAGCTTTGGGAGGATTCTATG 637 Query 684 TTGGAGTTGTTGTTGACAAAGAGATGGTTCTT-CTTCTTGGTGATATGAAGAAAGAAGCT 742 |||| |||||||| |||||||| |||||| || ||||||||||||||||||||||||||| Sbjct 638 TTGGTGTTGTTGTAGACAAAGAAATGGTT-TTGCTTCTTGGTGATATGAAGAAAGAAGCT 696 Query 743 TTTAAAAAGACGAATGCTGCACCTTCTTCATCTTTAGGTGCTGTGTTCATTGCTAAGAAA 802 ||||| |||||||||||| | ||||| || | || |||||||||||| |||||||||||| Sbjct 697 TTTAAGAAGACGAATGCTTCGCCTTCGTC-T-TT-AGGTGCTGTGTTTATTGCTAAGAAA 753 Query 803 GAGCATGTCTTTGGCAAGAGAACGTTTGCAACTAAAGCTCAGTTTTCAG-GTGATGGCAA 861 |||||||| ||||| |||||| ||||||||| ||||||||| ||| | | ||||| || Sbjct 754 GAGCATGTTTTTGGTAAGAGAGTGTTTGCAACGAAAGCTCAGCTTTGTGCG-GATGGGAA 812 Query 862 AACTCATGATCT-TGTGATCGAGTGTGACACTAGTCTCAGTGATCCTTGTCTCATTGTTC 920 || ||||||||| | |||| ||||||||||| ||| ||| |||||||||||| |||||| Sbjct 813 AATTCATGATCTAT-TGATTGAGTGTGACACGAGTGTCACTGATCCTTGTCTTGTTGTTC 871 Query 921 GTGTCGATGGAAAGATC-TTGATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAAC 979 |||| ||||| |||| | ||| |||| ||| |||||||| | |||||||| ||||||||| Sbjct 872 GTGTGGATGGGAAGA-CGTTGTTGCAGGTGAAGCGGCTTAAGTGGAAGTTTCGTGGCAAC 930 Query 980 GATACCATAATTGTCAATAGAATCTCTGTGGAAGTTCTCTGGGATGTCCACAGTTGGTTC 1039 ||||| |||||||| |||||||| ||||||||||||| |||||||| || |||||| || Sbjct 931 GATACGATAATTGTTAATAGAATGGCTGTGGAAGTTCTATGGGATGTTCATAGTTGGCTC 990 Query 1040 TTTGGGTTGCCATCATCACCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTT 1099 ||||||||||| || || | || || || ||||| ||||||||||||||||||||| | Sbjct 991 TTTGGGTTGCC-TC--CAGCGGGTAACGCCGTGTTCATGTTCAGGACTTGTCAATCTACT 1047 Query 1100 GAAAAGACCTGGTCTTTCACACAGGTCC---C--CA-CGAGCTCAAAATCTCAAAGTTTT 1153 || |||| || ||||||| || ||| | | || | | ||| || |||||||||||| Sbjct 1048 GAGAAGAGCTTGTCTTTCTCAGAGGACATGACAACAACAAACTCCAAGTCTCAAAGTTTT 1107 Query 1154 GGGTTTTCATTGATTCTGTATGCTTGGAAGAACGAGTAGA 1193 || ||||| ||||||||||| || |||||||||||||||| Sbjct 1108 GGTTTTTCGTTGATTCTGTACGCGTGGAAGAACGAGTAGA 1147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53745335695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5