BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04860.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477757 jgi|Araly1|477757|fgenesh2_kg.3__458__AT3G04860.1 1840 0.0
Ahg489643 jgi|Araly1|489643|fgenesh2_kg.6__2777__AT5G28150.1 830 0.0
> Ahg477757 jgi|Araly1|477757|fgenesh2_kg.3__458__AT3G04860.1
Length=1305
Score = 1840 bits (996), Expect = 0.0
Identities = 1139/1206 (94%), Gaps = 17/1206 (1%)
Strand=Plus/Plus
Query 103 tcattctctcCTTGGTTGATGAAACTGGATCGATTTGATAGAACCCAGATCAAATCTGTT 162
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 62 TCATTCTTTCCTTGGTTGATGAAACTGGATCGATTTGATAAAACCCAGATCAAATCTGTT 121
Query 163 GACATTTTTCCAGATTTCGATGCTTTTTTGAGATTGGGTTTCTCTTTCTTTTG-ATGAAA 221
|||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 122 GACATTTTTCCAAATTTCGATGCTTTTTTGAGATTGGGTTTCTCTTTCTTTTGAAT-TAA 180
Query 222 CTTATCA-C--TTTCAGCGTTGCCCAGTTTTGGCCACAAGGTGTTTGTTGAAATTCCGga 278
||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 181 CTTATCATCAGTTTCAGCGTTGCGCAGTTTTGGCCACAAAGTGTTTGTTGAAATTCC--T 238
Query 279 gagagagagaAGCTCGAAATTGGGAATTCTGTAAGGaaaaaaaaaTGAGAGATTTTCCTT 338
|||||||||||||| |||||||||||||| |||| | |||||||||||||| ||||
Sbjct 239 GAGAGAGAGAAGCTGGAAATTGGGAATTCCGTAA-G-----AAAATGAGAGATTTCCCTT 292
Query 339 CTTGCTCTGGTGAAAATGGTGTTCAGATTGCGGACTCTTCGTCTTCCTCGAGCGCTGGAA 398
||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 293 CTTGCTCCGGTGAAAATGGCGTCCAGATTGCGGATTCTTCGTCTTCATCGAGCGCTGGAA 352
Query 399 GAAATGCTCAGAATTTGGTAATATGCATCTACCGTTGCCGCATCCGAGGTAGGACTTGCT 458
||||||||||||||||||| || || |||||||||||||||||| ||||||||||||| |
Sbjct 353 GAAATGCTCAGAATTTGGTCATTTGTATCTACCGTTGCCGCATCAGAGGTAGGACTTG-T 411
Query 459 -TGATCACAGTCACATGGACTAAGAATCTGATGGGTCAGTGTGTTACCGTGGGGGTTGAT 517
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 412 ATGATCACAGTCACATGGACTAAGAATCTTATGGGTCAGTGTGTTACCGTGGGAGTTGAT 471
Query 518 GATTCTTGCAACCGAAGTCTGTGTAAAGTCGAGATTAAGCCGTGGCTCTTCACTAAACGA 577
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 472 GATTCTTGCAACCGAAGTCTGTGTAAAGTTGAGATTAAGCCGTGGCTCTTCACTAAACGA 531
Query 578 AAAGGGTCCAAGACTCTAGAGGCGTATGCCTGTAATATCGATGTTTTCTGGGATCTCTCG 637
| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 532 AGAGGGTCCAAAAGTCTAGAGGCGTATGCCTGTAGTATCGATGTTTTCTGGGATCTCTCG 591
Query 638 TCTGCTAAATTTGGATCCAGCCCTGAACCTTTAGGAGGGTTCTATGTTGGAGTTGTTGTT 697
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 592 TCTGCTAAATTCGGATCCAGCCCTGAACCTTTAGGAGGGTTCTATGTTGGAATTGTTGTG 651
Query 698 GACAAAGAGATGGTTCTTCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAAAAGACGAAT 757
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 652 GACAAAGAAATGGTTCTTCTTCTTGGTGATATGAAGAAAGAGGCTTTTAAAAAGACGAAT 711
Query 758 GCTGCACCTTCTTCATCTTTAGGTGCTGTGTTCATTGCTAAGAAAGAGCATGTCTTTGGC 817
|| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 712 GCCGCACCTTCTTCATCTCTAGGTGCTCTGTTCATTGCTAAGAAAGAGCATGTCTTTGGC 771
Query 818 AAGAGAACGTTTGCAACTAAAGCTCAGTTTTCAGGTGATGGCAAAACTCATGATCTTGTG 877
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 772 AAGAGAACGTTTGCAACTAAAGCTCAATTTTCAGGTGATGGCAAAACTCATGATCTTGTG 831
Query 878 ATCGAGTGTGACACTAGTCTCAGTGATCCTTGTCTCATTGTTCGTGTCGATGGAAAGATC 937
||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||| |
Sbjct 832 ATCGAATGTGACACCAGTATCAGTGATCCTTGTCTCATTGTTCGTGTTGATGGAAAGA-C 890
Query 938 TT-GATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAACGATACCATAATTGTCAA 996
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 891 TTTGATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAACGATACCATAATCGTCAA 950
Query 997 TAGAATCTCTGTGGAAGTTCTCTGGGATGTCCACAGTTGGTTCTTTGGGTTGCCATCATC 1056
||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 951 TAGGATCTCTGTGGAAGTCCTCTGGGATGTCCACAGTTGGTTCTTTGGGATGCCATCATC 1010
Query 1057 ACCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTTGAAAAGACCTGGTCTTT 1116
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1011 TCCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTTGAAAAGACTTGGTCTTT 1070
Query 1117 CACACAGGTCCCCACGAGCTCAAAATCTCAAAGTTTTGGGTTTTCATTGATTCTGTATGC 1176
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1071 CACGCAGGTCCCCACGAGCTCGAAATCTCAAAGTTTTGGGTTTTCATTGATTCTGTACGC 1130
Query 1177 TTGGAAGAACGAGTAGAGAAGAAGAGTTTTGAGAGTTCTTTTGTTTCTCTTGAGTGCTAA 1236
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1131 TTGGAAGAACGAGTAGAGAAGAAGAGTTTTGAGAGTTCTTTTCTTTCTCTTGAGTGCTAA 1190
Query 1237 CTAAAGGTTAAAAAGGAACTGTTGATTCTTGTCAATTTATTTTATCATATGATCAATTGG 1296
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1191 CTAAAGGTTAAAAAGGAACTGTTGATTCTTGCCAATTTATTTTATCATATGATCAATTGG 1250
Query 1297 TTTCAA 1302
||||||
Sbjct 1251 TTTCAA 1256
> Ahg489643 jgi|Araly1|489643|fgenesh2_kg.6__2777__AT5G28150.1
Length=1429
Score = 830 bits (449), Expect = 0.0
Identities = 742/880 (84%), Gaps = 33/880 (4%)
Strand=Plus/Plus
Query 329 GATTTTCCTTCTTGCTCTGGTGAAAATGGTGTTC-AGATTGCGGACTCTTCGTCTTCCTC 387
|||||||||||||||| ||||||||||||||||| || | ||||| || ||||||| | |
Sbjct 286 GATTTTCCTTCTTGCTTTGGTGAAAATGGTGTTCAAG-TAGCGGATTCATCGTCTT-C-C 342
Query 388 GAGCGCT-GGAAGAAATGCTCAGAATTTGG-TAATATGCATCTACC-GTTGCCGCATCCG 444
| | || |||| ||||||||||||||||| || | || ||||||| | || || || ||
Sbjct 343 -AACTCTGGGAA-AAATGCTCAGAATTTGGTTACT-TGTATCTACCAG-TGTCGAATTCG 398
Query 445 AGGTAGGACTTGCTTGATCACAGTCACATGGACTAAGAATCTGATGGGTCAGTGTGTTAC 504
|| || | ||| |||||||| || ||||||||||||||| |||||||||| |||| ||
Sbjct 399 TGGAAGAAATTGTTTGATCACTGTGACATGGACTAAGAATTTGATGGGTCAAAGTGTAAC 458
Query 505 CGTGGGGGTTGATGATTCTTGCAACCGAAGTCTGTGTAAAGTCGAGATTAAGCCGTGGCT 564
||| || |||||||||||||| |||| |||| |||||||||||||||||||||||||| |
Sbjct 459 CGTTGGTGTTGATGATTCTTGTAACCAAAGTTTGTGTAAAGTCGAGATTAAGCCGTGGTT 518
Query 565 CTTCACTAAACGAAAAGGGTCCAAGACTCTAGAGGCGTATGCCTGTAATATCGATGTTTT 624
||||||||||| |||||||| |||| | ||||||||||| | |||||||||||||||||
Sbjct 519 GTTCACTAAACGGAAAGGGTCTAAGAGTTTAGAGGCGTATTCGTGTAATATCGATGTTTT 578
Query 625 CTGGGATCTCTCGTCTGCTAAATTTGGATCCA-GCCCTGAACCTTTAGGAGGGTTCTATG 683
|||||||| |||||||| |||||||||| || | |||||| |||| ||||| |||||||
Sbjct 579 TTGGGATCTTTCGTCTGCGAAATTTGGAT-CAGGTCCTGAAGCTTTGGGAGGATTCTATG 637
Query 684 TTGGAGTTGTTGTTGACAAAGAGATGGTTCTT-CTTCTTGGTGATATGAAGAAAGAAGCT 742
|||| |||||||| |||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 638 TTGGTGTTGTTGTAGACAAAGAAATGGTT-TTGCTTCTTGGTGATATGAAGAAAGAAGCT 696
Query 743 TTTAAAAAGACGAATGCTGCACCTTCTTCATCTTTAGGTGCTGTGTTCATTGCTAAGAAA 802
||||| |||||||||||| | ||||| || | || |||||||||||| ||||||||||||
Sbjct 697 TTTAAGAAGACGAATGCTTCGCCTTCGTC-T-TT-AGGTGCTGTGTTTATTGCTAAGAAA 753
Query 803 GAGCATGTCTTTGGCAAGAGAACGTTTGCAACTAAAGCTCAGTTTTCAG-GTGATGGCAA 861
|||||||| ||||| |||||| ||||||||| ||||||||| ||| | | ||||| ||
Sbjct 754 GAGCATGTTTTTGGTAAGAGAGTGTTTGCAACGAAAGCTCAGCTTTGTGCG-GATGGGAA 812
Query 862 AACTCATGATCT-TGTGATCGAGTGTGACACTAGTCTCAGTGATCCTTGTCTCATTGTTC 920
|| ||||||||| | |||| ||||||||||| ||| ||| |||||||||||| ||||||
Sbjct 813 AATTCATGATCTAT-TGATTGAGTGTGACACGAGTGTCACTGATCCTTGTCTTGTTGTTC 871
Query 921 GTGTCGATGGAAAGATC-TTGATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAAC 979
|||| ||||| |||| | ||| |||| ||| |||||||| | |||||||| |||||||||
Sbjct 872 GTGTGGATGGGAAGA-CGTTGTTGCAGGTGAAGCGGCTTAAGTGGAAGTTTCGTGGCAAC 930
Query 980 GATACCATAATTGTCAATAGAATCTCTGTGGAAGTTCTCTGGGATGTCCACAGTTGGTTC 1039
||||| |||||||| |||||||| ||||||||||||| |||||||| || |||||| ||
Sbjct 931 GATACGATAATTGTTAATAGAATGGCTGTGGAAGTTCTATGGGATGTTCATAGTTGGCTC 990
Query 1040 TTTGGGTTGCCATCATCACCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTT 1099
||||||||||| || || | || || || ||||| ||||||||||||||||||||| |
Sbjct 991 TTTGGGTTGCC-TC--CAGCGGGTAACGCCGTGTTCATGTTCAGGACTTGTCAATCTACT 1047
Query 1100 GAAAAGACCTGGTCTTTCACACAGGTCC---C--CA-CGAGCTCAAAATCTCAAAGTTTT 1153
|| |||| || ||||||| || ||| | | || | | ||| || ||||||||||||
Sbjct 1048 GAGAAGAGCTTGTCTTTCTCAGAGGACATGACAACAACAAACTCCAAGTCTCAAAGTTTT 1107
Query 1154 GGGTTTTCATTGATTCTGTATGCTTGGAAGAACGAGTAGA 1193
|| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1108 GGTTTTTCGTTGATTCTGTACGCGTGGAAGAACGAGTAGA 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5