BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04880.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903316 jgi|Araly1|903316|Al_scaffold_0003_444 1299 0.0
Ahg477758 jgi|Araly1|477758|fgenesh2_kg.3__459__AT3G04870.2 150 2e-35
> Ahg903316 jgi|Araly1|903316|Al_scaffold_0003_444
Length=912
Score = 1299 bits (703), Expect = 0.0
Identities = 861/934 (92%), Gaps = 23/934 (2%)
Strand=Plus/Plus
Query 15 ATGGCCGGAGCTGTTTCTGCCGTCGATCAACCGTTGAAAATCATCACCGGAGCTGATGAC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCCGGAGCTGTTTCTGCCGTCGATCAACCGTTGAAAATCATCACCGGAGCCGATGAC 60
Query 75 TTTGGAGCGAGCCTCAAGGACGCGATGGTAACACACCTCCGCTCTCTCGGCATAGACGTG 134
|||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct 61 TTTGGAGCGAGCCTCAAGGACGCGATGGTATCTCACCTCCGTTCCCTCGGCATAGACGTG 120
Query 135 GAGGATACCGGAGTGTCCTCTTACTACTCTGCTGGATCTGAAGTCGGTCGCCGCGTCTCC 194
||||||||||||||| || ||||||| | | | |||||||||||
Sbjct 121 GAGGATACCGGAGTG---------TA-----CTGGATC-G--G-C---CGCCGCGTCTCA 159
Query 195 GCTTCATCGTCTTCCGAAGTTCGCGGCTTAGTCTGCTGCGGCACCGGCGTCGGAGTTGCG 254
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 160 GCTTCGTCTTCTTCCGAAGTTCGTGGCTTAGTCTGCTGCGGCACCGGCGTCGGAGTTGCG 219
Query 255 ATGTTCGCCAACAAGTTCCCGGGCGTCTACGCAGCCACTTGTCTCTCCGTCGAAGACGCC 314
|||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct 220 ATGTTCGCTAACAAGTTCCCCGGAGTCTACGCCGCCACTTGTCTCTCCGTCGAGGACGCC 279
Query 315 GTCAACGCTCGATCAATAAGCAATTGCAATGTCCTCGCATTCTCCGGCATCAAAACATCC 374
|| |||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| |||
Sbjct 280 GTGAACGCTCGATCAATCAGCAACTGCAACGTCCTCGCACTCTCCGGCATCAAAACCTCC 339
Query 375 CCGGAAACCGCCTTGGAAATCTTCGACGCTTGGATCAAAACTCC-TTTCAAATCTCCTTG 433
|| ||||||||| | ||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 340 CCCGAAACCGCCGTAGAAATCTTCGACGCTTGGATCAAAACTCCGTTT-AAATCCCCTTG 398
Query 434 TCCTGCGTCCGGATCCGAACCATGGAGCTCAGTTATCTCTTCCTTCCTCGACAATTCTCT 493
|||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 399 TCCTGCATCCGGATCCGAGCCATGGAGCTCAGATATCTCTTCCTTCCTTGACAATTCTCT 458
Query 494 CTCCGAGATGTCTCAGATTGGAAAGTCAACCGCCGGCGATTCAACAACCAAGAAGATCGA 553
||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 459 GTCCGAGATGTCTCAGATCGGAAAATCAACCGCCACCGATTCAACAACCAAGAAGATCGA 518
Query 554 TGAAACAACCGCGTCTTGCGTAATTTGCTGCTTGGCGAAGAACAGAGAGTTCACTCCAGT 613
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAAACAACCGCGTCTTGCGCGATTTGCTGCTTGGCGAAGAACAGAGAGTTCACTCCAGT 578
Query 614 GGACATCATGCCGGGAGGCTCGATGAAGATCGTTAGAGAGACGCCGACGTCGGCGATTGT 673
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 579 GGACATCATGCCGGGAGGCTCGATGAAGATCGTGAGGGAGACGCCGACGTCGGCGATAGT 638
Query 674 AAGATTCAAAGCGGGAAGTGTGGAACCGGCGCATCACCACACATTCGGCCATGACCTTGT 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AAGATTCAAAGCGGGAAGTGTGGAACCGGCGCATCACCACACATTCGGCCATGACCTTGT 698
Query 734 AGTCATAAAGGGAAAGAAAAGTGTGTGGAATCTGAGCAAGAAGGAGAGAGCTGATCTCGT 793
|||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 699 AGTCATTAAGGGGAAGAAGAGTGTTTGGAATCTGAGCAAGAAGGAGAGAGCTGATCTCAT 758
Query 794 TGACGGCGATTACCTATTCACTCCCGCCGGTGATGTTCACCGAGTCAAATATCACGAAGA 853
||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 759 TGACGGCGATTACCTATTCACGCCGGCCGGTGATGTTCATCGAGTCAAGTATCACGAAGA 818
Query 854 CACTGAGTTCTTCATCACTTGGGATGGCCATTGGGACATATTCCTTGACGAAGACCTCGA 913
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 819 CACTGAGTTCTTCATCACTTGGGATGGCCATTGGGACATTTTCCTTGACGAAGACATTGA 878
Query 914 AACTGCAAAGAAAGCCATCGAAGAAGAAGCTTGA 947
||||||||||||||||||||||||||||||||||
Sbjct 879 AACTGCAAAGAAAGCCATCGAAGAAGAAGCTTGA 912
> Ahg477758 jgi|Araly1|477758|fgenesh2_kg.3__459__AT3G04870.2
Length=1965
Score = 150 bits (81), Expect = 2e-35
Identities = 97/105 (92%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 997 GAGAGTAAACTTTCTTAAATTGATGTACTTTGTAAGAATCTTTGATTTCAAAAGATGGTG 1056
|||| |||||||||| |||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1965 GAGAATAAACTTTCTGGAATTGATGTACTTTGTAAGAATGTTTGATTTCAAAAGATTGTG 1906
Query 1057 TAATATTACAAATACTTTCTCTTATGAACACTATATAAAGGGTTT 1101
| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1905 TCATAATACAAATGCTTTCTCTTATGAACACTATATAAAGGGTTT 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5