BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04890.2
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903317 jgi|Araly1|903317|Al_scaffold_0003_445 811 0.0
> Ahg903317 jgi|Araly1|903317|Al_scaffold_0003_445
Length=651
Score = 811 bits (439), Expect = 0.0
Identities = 600/673 (89%), Gaps = 29/673 (4%)
Strand=Plus/Plus
Query 63 ATGGCGGGAGTGGCTTGCCAGATATCTATCAGCTC-ATC-TTCGACCTTTAGGAGGGTTA 120
||||||||||||||| ||||||||||||||||| | ||| || |||||| ||||||||||
Sbjct 1 ATGGCGGGAGTGGCTGGCCAGATATCTATCAGC-CGATCGTT-GACCTTGAGGAGGGTTA 58
Query 121 ATCAAT-GGCCACGGTGCTTCTCTGGTTCGCCGGAGAAGAAAACACCAGCTGTTTTGAAG 179
| | || |||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 59 A-CCATCGGCCGCGATGCTTCTCTGGTTCGCCGGAGAAGAAAACACCGGCTGTTTTGAAG 117
Query 180 TGGGCGGTTAGTGGAGTTACTGAATTTCTCCGGTTGA-TCTCCGGTGCTCCGTCTTCAAC 238
||||||||| ||||||| ||||| || || ||| | | ||||||||||||||||| || |
Sbjct 118 TGGGCGGTTGGTGGAGTCACTGAGTTGCTTCGGCT-ATTCTCCGGTGCTCCGTCTCCATC 176
Query 239 CTCCATCGCTACAAATAAGGATCGATCAAAGAATGAGGTTACTGCTGGAGATGTCGATGA 298
||||||| |||||||||| ||| |||||||| |||||||| ||||| ||||||| |||||
Sbjct 177 CTCCATCCCTACAAATAAAGATAGATCAAAGTATGAGGTTTCTGCTCGAGATGTTGATGA 236
Query 299 TGTGATGGGGATTTTGAGATCAGATTATCGAAATTTCTACTTCGTCACTGGAGTCTTGAC 358
||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 237 CGTGATGGAGATTTTGAGATCAGATTATCGAAATGCCTACTTCGTCACTGGAATCTTGAC 296
Query 359 TTCTGCAATTTACTCGGATGATTGCATCTTCGAGGATCCGACTATCAGCTTCCAGGGTAC 418
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCTTCAATTTACTCGGATGAATGCATCTTCGAGGATCCGACTATCAGCTTCCAGGGTAC 356
Query 419 AGAGCTGTATGAACGCAACTTGAAGTTACTGGTTCCGTTCCTCGAAGATGCATCCATTGA 478
|||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 357 AGAGTTGTATGAACGCAACTTGAAATTACTTGTTCCGTTCCTCGAAGATGCATCCATTGA 416
Query 479 ACTGCAAAATATGGAGAAGAGTGAGTCGTCCCAAAGAAACTATATACTAGCGACGTGGAA 538
||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 417 ACTGCAAAATATGGACAAGAGTGAGTCGTCCGAAAGAAACTATATACTGGCGACATGGAA 476
Query 539 GCTAAGAACTTACCTGAAGCTGCCATGGAGACCATTGATATCGATCAACGGGAA-TACGG 597
|||||| ||||||||||| || |||||||||||| | |||||||||||||| || |||||
Sbjct 477 GCTAAGGACTTACCTGAAACTTCCATGGAGACCACTAATATCGATCAACGG-AAGTACGG 535
Query 598 TTTATGATCTGGATAAAGACTTCAAAGCACTGGTTTTTGTACAAGATTGTGAGGCATGTC 657
|||||||||||||| |||||||||| | | | || || | | ||||||
Sbjct 536 TTTATGATCTGGATCGAGACTTCAAA--A-T--T----GT----GA--G-G---CATGTC 576
Query 658 GAGAGCTGGAATGTCTCTGCGCTAGAAGCAATCGGGCAGATATTCACCGTCAAGTCTTTT 717
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 577 GAGAGCTGGAATGTCTCTGCGCTAGAAGCAGTCGGGCAGATATTCACCGTCAAGTCTTTT 636
Query 718 CCCTTCCGTGACT 730
|||||| ||||||
Sbjct 637 CCCTTCGGTGACT 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5