BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04900.1
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477763 jgi|Araly1|477763|fgenesh2_kg.3__464__AT3G04900.1 765 0.0
> Ahg477763 jgi|Araly1|477763|fgenesh2_kg.3__464__AT3G04900.1
Length=593
Score = 765 bits (414), Expect = 0.0
Identities = 542/601 (90%), Gaps = 19/601 (3%)
Strand=Plus/Plus
Query 37 ATGAATCTCCAGTGTTGTGAAGACTTCCCTTCACGGGTCAAGAAGCTTTTGCGCCAAGTA 96
|||||||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||||
Sbjct 1 ATGAATCTCCAGTGTTGTGAAGACTTTCCTTCTCGGATAAAGAAGCTTTTGCGCAAAGTA 60
Query 97 AAAGGAGTTTACGCCATAACCATAGACCCGGTGAAGGGTCTGATTTTGGTCTGTGGCACA 156
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 61 AAAGGAGTTTACGCCATAACCATAGACCCTGTGAAGGGTCTGATTTTGGTCTCTGGCACA 120
Query 157 GCAGAACCTTCGGTGCTTATCAAAGCCGTCGCAAAATTGGGGCAAAGTCCCCAACTTTAC 216
||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 121 GCAGAACCTTCAGTGCTTATCAAAGCCGTCGCAAAAATCGGACAAAGTCCCCAACTTTAC 180
Query 217 GCCTACGAGAAGGATCCAGCTACAGCAAAGACCCGATTCCGCACCTTGCTTAAACGTTAT 276
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 181 GCCTACGAGAAGGATCCAGCTACGGCTAAGACCCGATTCCGCACCTTGCTTAAACGGTAC 240
Query 277 GCCACCAACAAGA-CACAAGATAAACCATCC-CCGCCTGCACCACCTGTCACGGCAACCA 334
|||||||||||| | |||||| |||||||| || |||||||| ||||||||||||||
Sbjct 241 GCCACCAACAAGGGC-CAAGATGAACCATCCTCC-CCTGCACC---TGTCACGGCAACCA 295
Query 335 CCCCCGTGGAAACTTGTCCAGCAGGAGGTGAAACATTTAGAGGTTTTGGGTATCCTGGAC 394
||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 296 ACCCCGTGGAAACTTGTCCAGCGGGAGGTGGAACATTTAGAGGTTTCGGGTATCCTGGAC 355
Query 395 CAACGACGATGATGCAGATGCCCGCCTTTTCGTTGCCCCCACCGA-GAGGACTGCCGGGA 453
|| ||||||||||||||||||| |||||| ||||||||||| || | |||| ||| |||
Sbjct 356 CACCGACGATGATGCAGATGCCGGCCTTTACGTTGCCCCCAAGGATG-GGACCGCCTGGA 414
Query 454 TGGTTAGCACCACCGACAAACCCGAGGTTGA-----A-GTACGAGGAGCCAAAGGTGACG 507
||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct 415 TGGTTAGCACCGTCGGCAAAACCGAGGTTGATGGTGAAGTACGAGGAGCCAAAGGTGACG 474
Query 508 -CCGAGGAAGCCGCCTGCGCCTTATCC-TTTCGATTACTACGAAAACTTGGGGTTTCCAC 565
|| ||||| ||||| ||||||||||| ||| |||| ||||||||||||||| |||||||
Sbjct 475 ACC-AGGAAACCGCCAGCGCCTTATCCCTTT-GATTTCTACGAAAACTTGGGTTTTCCAC 532
Query 566 CATCCGACTCTCTTTTCAACTATTTCAGCGATGATAACCCTCAACCTTGCTCCATCATGT 625
|||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||
Sbjct 533 CATCCGACTCTCTTTTCAACTATTTCAGCGATGAGAACGCTCAACCTTGCACTATCATGT 592
Query 626 G 626
|
Sbjct 593 G 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22949996034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5