BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04903.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903319 jgi|Araly1|903319|Al_scaffold_0003_447 366 4e-101
> Ahg903319 jgi|Araly1|903319|Al_scaffold_0003_447
Length=264
Score = 366 bits (198), Expect = 4e-101
Identities = 245/267 (92%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAGTTTTTTGGTAGCGTTTCTTATTGTGCTCGTCTTCTTCTGTGTTGAGAT-GAA 59
|||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct 1 ATGAAGAGTTTTTTGGTAGCGTTTCTTATTGTGCTCGTCTTCTTCTCTGCTGA-ATTGAA 59
Query 60 AATAGGAAATGGATTCAAAATAC-ATGAAGTACCAGAACCCACAGGAAAATGGTGCGGAT 118
|||||||||||||||| |||||| | | |||||||||||| |||||||||||||| ||||
Sbjct 60 AATAGGAAATGGATTCGAAATACCA-GTAGTACCAGAACCAACAGGAAAATGGTGTGGAT 118
Query 119 ATTCGGTGCCGATGAAACCATGCATAAACGATGA-TCGCGTTAAACGATGTATTGCGGAA 177
|||| ||||||||||||||||||| ||||||||| | || |||||| |||||||||||||
Sbjct 119 ATTCAGTGCCGATGAAACCATGCACAAACGATGAAT-GCATTAAACAATGTATTGCGGAA 177
Query 178 AATACGCATGGCTGGTTGATGGCTACTGGCATGTGCACATCTATCCCAAGCTTAAAGGAT 237
||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct 178 AATACGCATGGTTGGCTGATGACTACTGGCAAGTGCACATCTATCCCAAGCTTAAAAGAT 237
Query 238 TGTTACTGTATGCATCAGTGTCCCTAA 264
||||||||||| |||||||||||||||
Sbjct 238 TGTTACTGTATCCATCAGTGTCCCTAA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5