BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G04903.1

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903319 jgi|Araly1|903319|Al_scaffold_0003_447                     366    4e-101


> Ahg903319 jgi|Araly1|903319|Al_scaffold_0003_447
Length=264

 Score =  366 bits (198),  Expect = 4e-101
 Identities = 245/267 (92%), Gaps = 6/267 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGAGTTTTTTGGTAGCGTTTCTTATTGTGCTCGTCTTCTTCTGTGTTGAGAT-GAA  59
            |||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct  1    ATGAAGAGTTTTTTGGTAGCGTTTCTTATTGTGCTCGTCTTCTTCTCTGCTGA-ATTGAA  59

Query  60   AATAGGAAATGGATTCAAAATAC-ATGAAGTACCAGAACCCACAGGAAAATGGTGCGGAT  118
            |||||||||||||||| |||||| | | |||||||||||| |||||||||||||| ||||
Sbjct  60   AATAGGAAATGGATTCGAAATACCA-GTAGTACCAGAACCAACAGGAAAATGGTGTGGAT  118

Query  119  ATTCGGTGCCGATGAAACCATGCATAAACGATGA-TCGCGTTAAACGATGTATTGCGGAA  177
            |||| ||||||||||||||||||| ||||||||| | || |||||| |||||||||||||
Sbjct  119  ATTCAGTGCCGATGAAACCATGCACAAACGATGAAT-GCATTAAACAATGTATTGCGGAA  177

Query  178  AATACGCATGGCTGGTTGATGGCTACTGGCATGTGCACATCTATCCCAAGCTTAAAGGAT  237
            ||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct  178  AATACGCATGGTTGGCTGATGACTACTGGCAAGTGCACATCTATCCCAAGCTTAAAAGAT  237

Query  238  TGTTACTGTATGCATCAGTGTCCCTAA  264
            ||||||||||| |||||||||||||||
Sbjct  238  TGTTACTGTATCCATCAGTGTCCCTAA  264



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9203370901


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5