BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04920.1
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477767 jgi|Araly1|477767|fgenesh2_kg.3__468__AT3G04920.1 1158 0.0
Ahg942428 jgi|Araly1|942428|scaffold_602972.1 510 5e-144
> Ahg477767 jgi|Araly1|477767|fgenesh2_kg.3__468__AT3G04920.1
Length=716
Score = 1158 bits (627), Expect = 0.0
Identities = 689/719 (96%), Gaps = 4/719 (1%)
Strand=Plus/Plus
Query 22 TTCGGCGTCTCTTTCCTTCACCTGAGCGGACGAAAACACTCAAGCTTGCAGAGATCTTTC 81
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCGGCGTCTCTTTCCTTTACCCGAGCGGACGAAAACACTCAAGCTTGCAGAGATCTTTC 60
Query 82 ACTTTAATCCTTGAGAAGTAGCAAAAATGGCTGAAAAGGCGGTCACCATCCGAACCAGGA 141
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ACTTTAATCCTTGAGAAATCGCAAAAATGGCTGAAAAGGCAGTCACCATCCGAACCAGGA 120
Query 142 AATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTG 180
Query 202 GAAGAGCCAATGTTTCAAAGGCTGAGCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGAGCCAATGTTTCAAAGGCTGAGCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCA 240
Query 262 AGGATCCAAATGCAATCTTCGTATTCAAATTCAGAACCCACTTTGGAGGTGGTAAATCAT 321
|||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGACCCAAATGCTATCTTTGTTTTCAAATTCAGAACCCACTTTGGAGGTGGTAAATCAT 300
Query 322 CCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACA 381
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 CCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCCAAGAAGTTTGAACCCAAATACA 360
Query 382 GACTTATCAGGAATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAA 441
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 GACTTATCAGGAATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATCAAGGAAA 420
Query 442 GGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGACAAAGGCTGGTGATGCCAAGA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGACAAAGGCTGGTGATCCCAAGA 480
Query 502 AGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAAT 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAGT 540
Query 562 CACCTTTTATGTTATTTGTCCGCTGTTAGATCGTTTCTCCAACTAGACATGTTTACTGAA 621
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACCTTTTATGTTATTTATCTGCTGTTAGATCGTTTCTCCAACTAGACATGTTTACTGAA 600
Query 622 ATCTGAGAttttcgtttatttttgttttggtc-agtttatgttttgagtttAGAGAAACA 680
|||| |||||||| |||||||| |||| |||| | ||||| |||| ||||||||| ||||
Sbjct 601 ATCTCAGATTTTCTTTTATTTT-GTTTCGGTCGA-TTTATTTTTTAAGTTTAGAGGAACA 658
Query 681 TATGATCCAAGGTTTTTGTTCAATACAACTATTTAATCTCTCTCTCGTCTCTTTCCACC 739
||||||| |||||||| |||||||||| |||||||| |||||||| |||| ||||||||
Sbjct 659 TATGATCTAAGGTTTT-GTTCAATACATCTATTTAAACTCTCTCTTGTCTGTTTCCACC 716
> Ahg942428 jgi|Araly1|942428|scaffold_602972.1
Length=442
Score = 510 bits (276), Expect = 5e-144
Identities = 371/417 (89%), Gaps = 5/417 (1%)
Strand=Plus/Plus
Query 108 ATGGCTGAAAAGGCGGTCACCATCCGAACCAGGAAA-TTCATGACCAACAGACTTCTCTC 166
||||| ||||| || ||||| ||| | |||| |||| |||||||||||||| |||||| |
Sbjct 21 ATGGCGGAAAAAGCTGTCACAATCAGGACCA-GAAACTTCATGACCAACAGGCTTCTCGC 79
Query 167 CAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTGGAAGAGCCAATGTTTCAAAGGCTGA 226
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 80 CAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAGAGCCAATGTTTCAAAGGCTGA 139
Query 227 GCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCAAGGATCCAAATGCAATCTTC-GTAT 285
||| ||||||||| | || |||||||||||||| |||||||| ||||| |||||| || |
Sbjct 140 GCTTAAGGAGAAGTTGGCGAGGATGTACGAGGTTAAGGATCCGAATGCTATCTTCTGT-T 198
Query 286 TCAAATTCAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTTGATCTATGATA 345
||||||||||||| |||||||||||||||||||| || || | ||||||||||||||||
Sbjct 199 TCAAATTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTTGATCTATGATT 258
Query 346 CTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACAGACTTATCAGGAATGGACTTGACA 405
||||||||| |||||||||||| || || || |||||||| |||||||| ||||||||||
Sbjct 259 CTGTTGAGAACGCTAAGAAGTTCGAGCCTAAGTACAGACTGATCAGGAACGGACTTGACA 318
Query 406 CTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCC 465
| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 319 CCAAGATTGAGAAATCAAGGAAACAGATTAAGGAGAGGAAGAACAGGGCGAAGAAAATCC 378
Query 466 GTGGTGTTAAGAAGACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCT-GAAGAG 521
|||||||||||||||| ||||||||||| |||||||||||| |||| | ||||||
Sbjct 379 GTGGTGTTAAGAAGACCAAGGCTGGTGACCCCAAGAAGAAGTAAGATGTTTGAAGAG 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27219762738
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5