BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04930.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477768 jgi|Araly1|477768|fgenesh2_kg.3__469__AT3G04930.1 2567 0.0
> Ahg477768 jgi|Araly1|477768|fgenesh2_kg.3__469__AT3G04930.1
Length=1853
Score = 2567 bits (1390), Expect = 0.0
Identities = 1752/1911 (92%), Gaps = 87/1911 (5%)
Strand=Plus/Plus
Query 14 GAACACACCACcttctctccaatctggatctggttcctcttcttcttggtctcttctcca 73
||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||
Sbjct 1 GAACACACCACCTTCTCTCCAATCTGGATCTGG-T--TCTTCTTCTTGGTCTATTCTTCA 57
Query 74 tctcATCGGAGCTGATCTCGAATTGTTCTCCGTTCATTTGTTACGGTGGAGATGACATCG 133
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCTCACCGTAGCTGATCTCGTATTGTTCTCCGTTCATTTGTTACGGTGGAGATGACATCG 117
Query 134 GATCACCGCGACGCTCT-TTTCTCTCTGGAACTGGAATCGCCTGATCCGGACGAAGGAGG 192
||||||||||| |||| || ||||| | |||||||||| |||||||| ||||||||
Sbjct 118 GATCACCGCGA--CTCTGCTT-TCTCT---A-TGGAATCGCCGGATCCGGAGGAAGGAGG 170
Query 193 TGTAGCAGACGGAGGAGAATCTGATACCGACGAGGATTTGCGCGACAACGATGATGTTGT 252
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 171 TGTAGGAGACGGAGGAGAATCTGATACCGACGAGGATTTGCGTGACAACGATGATGTTGT 230
Query 253 TATGCCGGGAACGAACGAAGCTGAAGCTGAAGACGACGATCCCGAAGAGGAAGATCTCAA 312
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 231 TATGCCGGAAACGAACGAAGCCGAAGCTGAAGACGACGATCCCGAAGAGGAAGATCTCAA 290
Query 313 TTCTCCGTCTACATCATCACTCCCCATGGTTTCTACGATCTCAGCGACTGCTGTTGTTTC 372
||||||| |||||| ||||||||||||| ||||| |||||||| ||||||||
Sbjct 291 TTCTCCG---------TCACTCGCCATGGTTTCTACCATCTCGGCGACTGCGGTTGTTTC 341
Query 373 CGGGACCCCGACGGCGACTTCCTCTACAGGCGCCGTGACCGTTGCACTTCCGGCTGGATC 432
||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 342 CGGGAAGCCGACGGCGACTCCCTCTACAGGCGCCGTGACTGTTGCTCTTCCGGCTGGATC 401
Query 433 CGCCGTCCCTGTCTCCGTGATTCCCGTTGATTCCGATCCGAAGTGGCACCGTATGACGGA 492
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 402 CGCCGTCCCTGTCTCTGTGATTCCCGTTGATTCCGATCCGAAATGGCACCGTATGACGGA 461
Query 493 GATCGTCCATCAGAGACCACCGATCGATGATTCTAGACGCCTTTTCCAGAGGCTGTGGAC 552
|||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 462 GATCGTTCACCAGAGACCTCCGATCGATGATTCTAGACGCCTATTCCAGAGGCTGTGGAC 521
Query 553 AGACGAAGACGAGATCGAGCTTCTTCGTGGTTTTCTCGATTACATGACGATGCACCGCGG 612
|| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 522 GGATGAAGACGAGATCGAGCTTCTCCGTGGTTTTCTCGATTACATGACGACGCACCGTGG 581
Query 613 AAGCAGCTCGCATCCGCCGGATACGGCGCCGTTTTATGAGCAGATAAAGTCGAAACTTCA 672
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 582 TAGCAGCTCGCATCCGCCGGATACGGCGCCGTTTTACGAGCAGATAAAGTCGAAACTTCA 641
Query 673 GCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGCTTCGGAGATTGAAGAAGAAGTACAG 732
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 642 GCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGCTTCGGCGATTGAAGAAGAAGTACAG 701
Query 733 GAATGTGATGAGCAAGATCAGCTCTGGTAAAGAGGTATTCTTCAAGAGCCCTCATGATCA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GAATGTGATGAGCAAGATCAGCTCTGGTAAAGAGGTATTCTTCAAGAGCCCTCATGATCA 761
Query 793 GTCTACTTTCGAGATTTCTAGAAAAATCTGGAACCAAACTGGGAAAATCATAGGCTTTGA 852
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 762 GTCTACTTTCGAGATTTCTAGGAAAATCTGGAACCAAACTGGGAAAATCATAGGGTTTGA 821
Query 853 AGATAACAACGTAATGGATTTCGAAGAAACCAATAACCATCATAACACCACCAATGGTAA 912
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 822 AGATAACAACGTAATGGATTTCGAAGAAACCAATAACCATCATAACACCA--A-TGGTAA 878
Query 913 CTACTCAACCTTTAACAGCCCTAGTTCTAATCCTACTCTGGAGCTCGACTCCGAAAATGG 972
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 879 CTACTCAACCTTTAACAGCCCTAGTTCTAATCCTACTCTGGAGCTCGATTCCGAAAACGG 938
Query 973 AATCGAGAAGAAATTGACAATGAGTAGCAGTAGCGTGTCGAGAAAACGATCACGATCAAG 1032
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AGTCGAGAAGAAATTGACAATGAGTAGCAGTAGCGTGTCGAGAAAACGATCACGATCAAG 998
Query 1033 AATTGGGAAGATTGAGGAAGACAACAAACCTGTCATCACTCCCTCTGATGGGC-----C- 1086
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 999 AATTGGGAAGATTGAGGAAGACAACAAACCCGTCATCACTCCCTCTGATGGGCAGATACC 1058
Query 1087 AA-T--AGCTAGCAATGTCAACCTCAACGAA---GCTGCAGCTGTTGGTATTGGAGGAAA 1140
|| | |||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 1059 AAATGCAGCTAGCAATGTTAACCTCAACGAAACCGCAGCAGCTGTTGGTATTGGAGGAAA 1118
Query 1141 TCTCGGGGGTTTGATCGAAGAGACTGTGAAAAACTGTGTCTCTCCTGTGATCAAAGAGAT 1200
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1119 TCTCGGGGGTTTGATCGAAGAGACTGTGAAAAACTGCGTTTCTCCTGTGATCAAGGAGAT 1178
Query 1201 GATGAATGGGACAACAAGTATGATGATGGCTGCAATGGGAGGAGGGTTTCCGGGTCTtgg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1179 GATGAATGGGACAACAAGTATGATGATGGCTGCAATGGGAGGAGGGTTTCCAGGT---GG 1235
Query 1261 tggtggtggtggtggtggtggtggtCATGGTTTTGGCTCGCTAAGCCCCATGTTTACACG 1320
|||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1236 TGGTGGTGGT---------------CATGGCTTTGGCTCGCTAAGCCCCATGTTTACACG 1280
Query 1321 GCCGTTCAATTTCGGTTTTGGTGTAGA-GGGAGGAGGAAACAAGGCGGTTGCAGATGAGC 1379
|||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1281 GCCGCTCAATTTCGGTTTTGGTGTAGAAGGG-GGAGGAAACAAGGCGGTGGCAGATGAGC 1339
Query 1380 GGTGGAGGAAACAACAGATTCTGGAATTGGAAGTGTATTCAAGGAGATTAGAGTTGGTTC 1439
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1340 GGTGGAGGAAACAACAGATTCTGGAGCTGGAAGTGTATTCAAGGAGATTAGAATTGGTTC 1399
Query 1440 AAGAGCAGATTAGAACGACATTGAACGAGTTAAAGACGATGCCGAGTGGTATATGATGAA 1499
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1400 AAGAGCAGATTAGAACAACATTGAACGAGTTAAAGACGATGCCGAGTGGTGTATGATGAA 1459
Query 1500 GGGCGAGAAGAATAAGACAACAAGGAACCATTTAGGTTGATATTTGATATCTTTGAGTTA 1559
| || ||||||||||||||| || ||||| ||||||||||||||||||||| ||| |||
Sbjct 1460 GAGCAAGAAGAATAAGACAAGAAATAACCAGTTAGGTTGATATTTGATATCTCTGAATTA 1519
Query 1560 ACCTTCTGGTGTGTGAGTGAGTATAGTAAGAGATTTGGATCTTTTT-AAGTTATAAATTG 1618
||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1520 ACCTTCTGGTGTGTGGGTGAGTATAGTAAGAGATTTGAATCTTTTTTAAGTTATAAATTG 1579
Query 1619 GTAAGGTATTGTGATCTTTCTCTAGGttttttcatcattttgatttttttttCTTCTTCT 1678
||||||||||||||||||||||||||||| ||||||||||| || | ||
Sbjct 1580 CTAAGGTATTGTGATCTTTCTCTAGGTTTT-----------GATTTTTTTTT-TT-T-CT 1625
Query 1679 TATCTTTAAATTATTTGTCAATAGGGATGAATCATAGGAGGGGGG--------TTTGTGT 1730
|||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1626 TATCTTTAAATTATTTGTCAATAGGGATGAATCATAGGTGGGGGGGGGGGGGGTTTGTGT 1685
Query 1731 ATAACCTTTTGTATTAGATTATAGTTCTTTTTTCGTAGAATCATTTGTTCAATAACAAAC 1790
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1686 ATAACCTTT-GTATTAGATTATAGTTTTTTTTTCGTAGAATCATTTGTTCAATAACAAAC 1744
Query 1791 A----GACTTTCTAGCTGTTT-TTCTTTCAAAAAGAAGAAAAAT-AATAATTCTAAATTG 1844
| ||||| |||||||||| |||| |||||||||| |||||| ||||| |||||||||
Sbjct 1745 AAACAGACTT-CTAGCTGTTTATTCTCTCAAAAAGAA-AAAAATGAATAACTCTAAATTG 1802
Query 1845 TGTGCTACTCTTTCTTTGTCTAATAAAATCTGTAATAACATGTTTATTTCT 1895
||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1803 TGTGCTAATCTTTCTCTGTCTAATAAAATCTGTAATAACATGTTTATTTCT 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5