BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04930.1 Length=1895 Score E Sequences producing significant alignments: (Bits) Value Ahg477768 jgi|Araly1|477768|fgenesh2_kg.3__469__AT3G04930.1 2567 0.0 > Ahg477768 jgi|Araly1|477768|fgenesh2_kg.3__469__AT3G04930.1 Length=1853 Score = 2567 bits (1390), Expect = 0.0 Identities = 1752/1911 (92%), Gaps = 87/1911 (5%) Strand=Plus/Plus Query 14 GAACACACCACcttctctccaatctggatctggttcctcttcttcttggtctcttctcca 73 ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| || Sbjct 1 GAACACACCACCTTCTCTCCAATCTGGATCTGG-T--TCTTCTTCTTGGTCTATTCTTCA 57 Query 74 tctcATCGGAGCTGATCTCGAATTGTTCTCCGTTCATTTGTTACGGTGGAGATGACATCG 133 ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 58 TCTCACCGTAGCTGATCTCGTATTGTTCTCCGTTCATTTGTTACGGTGGAGATGACATCG 117 Query 134 GATCACCGCGACGCTCT-TTTCTCTCTGGAACTGGAATCGCCTGATCCGGACGAAGGAGG 192 ||||||||||| |||| || ||||| | |||||||||| |||||||| |||||||| Sbjct 118 GATCACCGCGA--CTCTGCTT-TCTCT---A-TGGAATCGCCGGATCCGGAGGAAGGAGG 170 Query 193 TGTAGCAGACGGAGGAGAATCTGATACCGACGAGGATTTGCGCGACAACGATGATGTTGT 252 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 171 TGTAGGAGACGGAGGAGAATCTGATACCGACGAGGATTTGCGTGACAACGATGATGTTGT 230 Query 253 TATGCCGGGAACGAACGAAGCTGAAGCTGAAGACGACGATCCCGAAGAGGAAGATCTCAA 312 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 231 TATGCCGGAAACGAACGAAGCCGAAGCTGAAGACGACGATCCCGAAGAGGAAGATCTCAA 290 Query 313 TTCTCCGTCTACATCATCACTCCCCATGGTTTCTACGATCTCAGCGACTGCTGTTGTTTC 372 ||||||| |||||| ||||||||||||| ||||| |||||||| |||||||| Sbjct 291 TTCTCCG---------TCACTCGCCATGGTTTCTACCATCTCGGCGACTGCGGTTGTTTC 341 Query 373 CGGGACCCCGACGGCGACTTCCTCTACAGGCGCCGTGACCGTTGCACTTCCGGCTGGATC 432 ||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||| Sbjct 342 CGGGAAGCCGACGGCGACTCCCTCTACAGGCGCCGTGACTGTTGCTCTTCCGGCTGGATC 401 Query 433 CGCCGTCCCTGTCTCCGTGATTCCCGTTGATTCCGATCCGAAGTGGCACCGTATGACGGA 492 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 402 CGCCGTCCCTGTCTCTGTGATTCCCGTTGATTCCGATCCGAAATGGCACCGTATGACGGA 461 Query 493 GATCGTCCATCAGAGACCACCGATCGATGATTCTAGACGCCTTTTCCAGAGGCTGTGGAC 552 |||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 462 GATCGTTCACCAGAGACCTCCGATCGATGATTCTAGACGCCTATTCCAGAGGCTGTGGAC 521 Query 553 AGACGAAGACGAGATCGAGCTTCTTCGTGGTTTTCTCGATTACATGACGATGCACCGCGG 612 || |||||||||||||||||||| ||||||||||||||||||||||||| |||||| || Sbjct 522 GGATGAAGACGAGATCGAGCTTCTCCGTGGTTTTCTCGATTACATGACGACGCACCGTGG 581 Query 613 AAGCAGCTCGCATCCGCCGGATACGGCGCCGTTTTATGAGCAGATAAAGTCGAAACTTCA 672 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 582 TAGCAGCTCGCATCCGCCGGATACGGCGCCGTTTTACGAGCAGATAAAGTCGAAACTTCA 641 Query 673 GCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGCTTCGGAGATTGAAGAAGAAGTACAG 732 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 642 GCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGCTTCGGCGATTGAAGAAGAAGTACAG 701 Query 733 GAATGTGATGAGCAAGATCAGCTCTGGTAAAGAGGTATTCTTCAAGAGCCCTCATGATCA 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 GAATGTGATGAGCAAGATCAGCTCTGGTAAAGAGGTATTCTTCAAGAGCCCTCATGATCA 761 Query 793 GTCTACTTTCGAGATTTCTAGAAAAATCTGGAACCAAACTGGGAAAATCATAGGCTTTGA 852 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 762 GTCTACTTTCGAGATTTCTAGGAAAATCTGGAACCAAACTGGGAAAATCATAGGGTTTGA 821 Query 853 AGATAACAACGTAATGGATTTCGAAGAAACCAATAACCATCATAACACCACCAATGGTAA 912 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 822 AGATAACAACGTAATGGATTTCGAAGAAACCAATAACCATCATAACACCA--A-TGGTAA 878 Query 913 CTACTCAACCTTTAACAGCCCTAGTTCTAATCCTACTCTGGAGCTCGACTCCGAAAATGG 972 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 879 CTACTCAACCTTTAACAGCCCTAGTTCTAATCCTACTCTGGAGCTCGATTCCGAAAACGG 938 Query 973 AATCGAGAAGAAATTGACAATGAGTAGCAGTAGCGTGTCGAGAAAACGATCACGATCAAG 1032 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 939 AGTCGAGAAGAAATTGACAATGAGTAGCAGTAGCGTGTCGAGAAAACGATCACGATCAAG 998 Query 1033 AATTGGGAAGATTGAGGAAGACAACAAACCTGTCATCACTCCCTCTGATGGGC-----C- 1086 |||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 999 AATTGGGAAGATTGAGGAAGACAACAAACCCGTCATCACTCCCTCTGATGGGCAGATACC 1058 Query 1087 AA-T--AGCTAGCAATGTCAACCTCAACGAA---GCTGCAGCTGTTGGTATTGGAGGAAA 1140 || | |||||||||||| |||||||||||| || ||||||||||||||||||||||| Sbjct 1059 AAATGCAGCTAGCAATGTTAACCTCAACGAAACCGCAGCAGCTGTTGGTATTGGAGGAAA 1118 Query 1141 TCTCGGGGGTTTGATCGAAGAGACTGTGAAAAACTGTGTCTCTCCTGTGATCAAAGAGAT 1200 |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 1119 TCTCGGGGGTTTGATCGAAGAGACTGTGAAAAACTGCGTTTCTCCTGTGATCAAGGAGAT 1178 Query 1201 GATGAATGGGACAACAAGTATGATGATGGCTGCAATGGGAGGAGGGTTTCCGGGTCTtgg 1260 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1179 GATGAATGGGACAACAAGTATGATGATGGCTGCAATGGGAGGAGGGTTTCCAGGT---GG 1235 Query 1261 tggtggtggtggtggtggtggtggtCATGGTTTTGGCTCGCTAAGCCCCATGTTTACACG 1320 |||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1236 TGGTGGTGGT---------------CATGGCTTTGGCTCGCTAAGCCCCATGTTTACACG 1280 Query 1321 GCCGTTCAATTTCGGTTTTGGTGTAGA-GGGAGGAGGAAACAAGGCGGTTGCAGATGAGC 1379 |||| |||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| Sbjct 1281 GCCGCTCAATTTCGGTTTTGGTGTAGAAGGG-GGAGGAAACAAGGCGGTGGCAGATGAGC 1339 Query 1380 GGTGGAGGAAACAACAGATTCTGGAATTGGAAGTGTATTCAAGGAGATTAGAGTTGGTTC 1439 ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 1340 GGTGGAGGAAACAACAGATTCTGGAGCTGGAAGTGTATTCAAGGAGATTAGAATTGGTTC 1399 Query 1440 AAGAGCAGATTAGAACGACATTGAACGAGTTAAAGACGATGCCGAGTGGTATATGATGAA 1499 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1400 AAGAGCAGATTAGAACAACATTGAACGAGTTAAAGACGATGCCGAGTGGTGTATGATGAA 1459 Query 1500 GGGCGAGAAGAATAAGACAACAAGGAACCATTTAGGTTGATATTTGATATCTTTGAGTTA 1559 | || ||||||||||||||| || ||||| ||||||||||||||||||||| ||| ||| Sbjct 1460 GAGCAAGAAGAATAAGACAAGAAATAACCAGTTAGGTTGATATTTGATATCTCTGAATTA 1519 Query 1560 ACCTTCTGGTGTGTGAGTGAGTATAGTAAGAGATTTGGATCTTTTT-AAGTTATAAATTG 1618 ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1520 ACCTTCTGGTGTGTGGGTGAGTATAGTAAGAGATTTGAATCTTTTTTAAGTTATAAATTG 1579 Query 1619 GTAAGGTATTGTGATCTTTCTCTAGGttttttcatcattttgatttttttttCTTCTTCT 1678 ||||||||||||||||||||||||||||| ||||||||||| || | || Sbjct 1580 CTAAGGTATTGTGATCTTTCTCTAGGTTTT-----------GATTTTTTTTT-TT-T-CT 1625 Query 1679 TATCTTTAAATTATTTGTCAATAGGGATGAATCATAGGAGGGGGG--------TTTGTGT 1730 |||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1626 TATCTTTAAATTATTTGTCAATAGGGATGAATCATAGGTGGGGGGGGGGGGGGTTTGTGT 1685 Query 1731 ATAACCTTTTGTATTAGATTATAGTTCTTTTTTCGTAGAATCATTTGTTCAATAACAAAC 1790 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1686 ATAACCTTT-GTATTAGATTATAGTTTTTTTTTCGTAGAATCATTTGTTCAATAACAAAC 1744 Query 1791 A----GACTTTCTAGCTGTTT-TTCTTTCAAAAAGAAGAAAAAT-AATAATTCTAAATTG 1844 | ||||| |||||||||| |||| |||||||||| |||||| ||||| ||||||||| Sbjct 1745 AAACAGACTT-CTAGCTGTTTATTCTCTCAAAAAGAA-AAAAATGAATAACTCTAAATTG 1802 Query 1845 TGTGCTACTCTTTCTTTGTCTAATAAAATCTGTAATAACATGTTTATTTCT 1895 ||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1803 TGTGCTAATCTTTCTCTGTCTAATAAAATCTGTAATAACATGTTTATTTCT 1853 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71190667905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5