BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04940.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928063 jgi|Araly1|928063|scaffold_300520.1 1635 0.0
> Ahg928063 jgi|Araly1|928063|scaffold_300520.1
Length=1015
Score = 1635 bits (885), Expect = 0.0
Identities = 959/996 (96%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 143 CATGGAGGAGGACCGGTGTTCGATCAAGGATGATGCAACTCAATTGATAGGTAACACCCC 202
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 20 CATGGAGGAGGACCGGTGTTCTATCAAGGATGATGCAACTCAATTGATAGGTAACACCCC 79
Query 203 AATGGTATATCTGAACAACATTGTGGATGGTTGTGTAGCTCGTATTGCAGCTAAGCTTGA 262
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 80 AATGGTATATCTGAACAACATTGTGGATGGTTGTGTAGCCCGTATTGCAGCTAAGCTTGA 139
Query 263 AATGATGGAGCCTTGCTCTAGTGTCAAGGAGCGAATTGCTTATGGTATGATTAAAGATGC 322
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 140 AATGATGGAGCCTTGCTCTAGTGTCAAGGAGCGAATTGCTTACGGTATGATTAAAGATGC 199
Query 323 AGAAGACAAGGGATTGATTACTCCTGGGAAGAGCACACTGATTGAGGCTACCTCTGGTAA 382
||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 200 AGAAGACAAGGGATTGATTACCCCCGGGAAGAGCACACTGATCGAGGCTACTTCTGGTAA 259
Query 383 CACCGGGATTGGTTTAGCCTTCATCGGTGCAGCTAAAGGTTACAAAGTGGTCCTCACAAT 442
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 260 CACCGGGATTGGTTTAGCCTTCATCGGGGCAGCTAAAGGTTACAAAGTGGTCCTCACAAT 319
Query 443 GCCCTCATCAATGAGCCTTGAGAGAAAAATCATTCTTTTAGCATTAGGTGCGGAGGTTCA 502
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 320 GCCTTCAACAATGAGCCTTGAGAGAAAAATCATTCTTTTAGCATTAGGTGCAGAGGTTCA 379
Query 503 CCTCACAGATCCTAGTAAAGGCGTTCAAGGAATAATCGACAAAGCTGAAGAGATATGTAG 562
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 380 CCTCACAGATCCTAGTAAAGGCGTTCAAGGAATAATCGACAAAGCTGAAGAGATTTGTAG 439
Query 563 CAAAAATCCAGATAGTATCATGCTAGAACAGTTCAAAAATCCTTCAAACCCGCAAACTCA 622
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 440 CAAAACTCCAGATAGTATCATGCTAGAACAGTTCAAAAATCCTTCAAACCCGGAAACTCA 499
Query 623 TTATCGAACCACGGGTCCAGAGATATGGAGAGACTCTGCAGGGGAAGTAGACATATTGGT 682
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTATCAAACCACGGGTCCAGAGATATGGAGAGACTCTGCAGGGGAAGTAGACATATTGGT 559
Query 683 TGCCGGTGTTGGAACTGGTGGAACGCTTTCCGGATCAGGAAGATTCCTCAAGGAGAAGAA 742
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 560 TGCCGGTGTTGGGACTGGTGGAACGCTTTCCGGATCAGGAAGGTTCCTCAAGGAGAAGAA 619
Query 743 TAAAGACTTTAAGGTTTATGGTGTGGAACCTACAGAAAGTGCGGTAATAAGTGGAGGCAA 802
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 620 TAAAGACTTTAAGGTTTACGGTGTGGAACCTACAGAAAGTGCGGTAATCAGTGGAGGCAA 679
Query 803 ACCGGGTACACATTTGATCCAAGGTATTGGGGCTGGACTCATCCCAGACAATTTGGATTT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ACCGGGTACACATTTGATCCAAGGTATTGGGGCTGGACTCATCCCAGACAATTTGGATTT 739
Query 863 CAACGTTCTTGATGAAGTCATCCAAGTGACAAGTGTGGAAGCAATTGAAACAGCCAAACT 922
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 740 CAGCGTTCTTGATGAAGTCATTCAAGTGACAAGTGTGGAAGCAATTGAAACAGCCAAACT 799
Query 923 TCTTGCCCTGAAAGAAGGATTACTGGTGGGAATATCTTCTGGAGCTGCTGCAGCCGCTGC 982
||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 800 TCTTGCCTTGAAAGAAGGATTACTGGTGGGAATATCTTCCGGAGCTGCAGCCGCCGCTGC 859
Query 983 GATAAAGGTGGCAAAGCGGCCAGAAAACGCCGGCAAACTCATAGTTGTGATTTTCCCTAG 1042
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 860 GATAAAGGTGGCAAAGCGGCCAGAAAACACCGGGAAACTCATAGTTGTGATTTTCCCCAG 919
Query 1043 CGGTGGGGAACGTTACCTATCGACCTCATTGTTCGAATCAGTCAGACATGAAGCAGAGAA 1102
||| |||||||| ||| ||||||| || |||||||||| ||||||||||||||||||||
Sbjct 920 CGGCGGGGAACGGTACTTATCGACTTCGCTGTTCGAATCGGTCAGACATGAAGCAGAGAA 979
Query 1103 TTTGCCAATTCAATGAGGCTTTTACACGACCTGACT 1138
|||||||||||| |||||||||||||| ||||||||
Sbjct 980 TTTGCCAATTCACTGAGGCTTTTACACTACCTGACT 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5