BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04943.1 Length=246 Score E Sequences producing significant alignments: (Bits) Value Ahg903326 jgi|Araly1|903326|Al_scaffold_0003_454 361 2e-99 > Ahg903326 jgi|Araly1|903326|Al_scaffold_0003_454 Length=240 Score = 361 bits (195), Expect = 2e-99 Identities = 232/248 (94%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 1 ATGAAAAACTCTTCTCTTCTT-TTCATACTTATTGTCGTTTTCGTTATTTCTTCTTCAGA 59 |||||||||||||||||| || ||||||| || | | | ||||||||||||||||||| Sbjct 1 ATGAAAAACTCTTCTCTT-TTATTCATAC-TAAT-T-G---TCGTTATTTCTTCTTCAGA 53 Query 60 AAACGGGATCATGATAGGAGAAGCAAAAAAGTGTAGTAATTCATGGATTTGTGAAGGAGA 119 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54 AAACGGCAAAATGATAGGAGAAGCAAAAAAGTGTAGTAATTCATGGATTTGTGAAGGAGA 113 Query 120 CGAGAAATGCAAAGAGAAGTGCATGGCTGACTACAAAGGCAATGGAACATGTTATTACCC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 CGAGAAATGCAAAGAGAAGTGCATGGCTGACTACAAAGGCAATGGAACATGTTATTACCC 173 Query 180 ATCTCCTCCTTCAAAACAACATCCTGAGTTCTT-TTATCCTACATGCTGGTGTGGGTTTG 238 |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 174 ATCTCCTCCTTCAAAACAACATCCTGAGTT-TTCTTATCCTACATGCTGGTGTGGGTTTC 232 Query 239 ATTGTTAA 246 | |||||| Sbjct 233 AGTGTTAA 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8515982203 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5