BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04943.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903326 jgi|Araly1|903326|Al_scaffold_0003_454 361 2e-99
> Ahg903326 jgi|Araly1|903326|Al_scaffold_0003_454
Length=240
Score = 361 bits (195), Expect = 2e-99
Identities = 232/248 (94%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 1 ATGAAAAACTCTTCTCTTCTT-TTCATACTTATTGTCGTTTTCGTTATTTCTTCTTCAGA 59
|||||||||||||||||| || ||||||| || | | | |||||||||||||||||||
Sbjct 1 ATGAAAAACTCTTCTCTT-TTATTCATAC-TAAT-T-G---TCGTTATTTCTTCTTCAGA 53
Query 60 AAACGGGATCATGATAGGAGAAGCAAAAAAGTGTAGTAATTCATGGATTTGTGAAGGAGA 119
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 AAACGGCAAAATGATAGGAGAAGCAAAAAAGTGTAGTAATTCATGGATTTGTGAAGGAGA 113
Query 120 CGAGAAATGCAAAGAGAAGTGCATGGCTGACTACAAAGGCAATGGAACATGTTATTACCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 CGAGAAATGCAAAGAGAAGTGCATGGCTGACTACAAAGGCAATGGAACATGTTATTACCC 173
Query 180 ATCTCCTCCTTCAAAACAACATCCTGAGTTCTT-TTATCCTACATGCTGGTGTGGGTTTG 238
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 174 ATCTCCTCCTTCAAAACAACATCCTGAGTT-TTCTTATCCTACATGCTGGTGTGGGTTTC 232
Query 239 ATTGTTAA 246
| ||||||
Sbjct 233 AGTGTTAA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5