BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G04945.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903327 jgi|Araly1|903327|Al_scaffold_0003_455                     300    3e-81


> Ahg903327 jgi|Araly1|903327|Al_scaffold_0003_455
Length=231

 Score =  300 bits (162),  Expect = 3e-81
 Identities = 212/235 (90%), Gaps = 8/235 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGAACTCTTCCATTCTCTTCGTACTAATTATTGTTGTT-TTTCTCATTT-CTT-CT  57
            |||||||||||||| |||||||||||||||||| ||||| || ||| || |||  ||  |
Sbjct  1    ATGAAGAACTCTTCGATTCTCTTCGTACTAATTGTTGTT-TTGTTT-TCTTTTAATTGTT  58

Query  58   TCAGGAAACAAGAAGATGGTAGGAGAAGCAAAGAAATGCGACCAGACGTGGACTTGTGAA  117
            | | ||||||||||||||||||||||||||||||| |||||  |||||||||||||||| 
Sbjct  59   TGA-GAAACAAGAAGATGGTAGGAGAAGCAAAGAAGTGCGAGAAGACGTGGACTTGTGAG  117

Query  118  GGAGAAGACAAATGCAGAGAAAAGTGTC-TGACTTTGCACAATGGAGTTGGAGTCTGTGA  176
            |||||||||||||||||||||||||| |  ||||||| ||||||||| |||| |||||||
Sbjct  118  GGAGAAGACAAATGCAGAGAAAAGTG-CAAGACTTTGTACAATGGAGATGGAATCTGTGA  176

Query  177  TTTGTACACTGCTCCTTTGGTTCCTAAGCAATGTTTTTGCCACTATGATTGCTAA  231
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  177  TTTGTACACTGCTCCTTTGGTTCCTAAGCAATGTTTCTGCCACTATGATTGCTAA  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5