BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04950.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477772 jgi|Araly1|477772|fgenesh2_kg.3__473__AT3G04950.1 1225 0.0
> Ahg477772 jgi|Araly1|477772|fgenesh2_kg.3__473__AT3G04950.1
Length=776
Score = 1225 bits (663), Expect = 0.0
Identities = 743/781 (95%), Gaps = 7/781 (1%)
Strand=Plus/Plus
Query 21 AAACCCTGAAACCCTAATTCTTCAGT-AATTAGTTTCCAAA-GCAGTTAATTTTGGGCGG 78
||||||| |||||||||||||||| | |||||||||||||| || || ||||||||||||
Sbjct 1 AAACCCTAAAACCCTAATTCTTCA-TAAATTAGTTTCCAAAGGC-GTCAATTTTGGGCGG 58
Query 79 AAAATGTGGTCTTCGAGAACTCTCAAGTATATTTTCAGGCTAAGACCTGAACCAATTTCT 138
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AAAATGTGGTCTTCGAGAGCTCTCAAGTATATTTTCAGGCTAAGACCTGAACCAATTTCT 118
Query 139 TCCTCATCGTCTTCTGCGTATTCGCTCTCTCGCATCACCGGAGGTTCTCCAATTCCGTCG 198
|| ||||||| ||| || |||||||| |||||||||||||| ||| ||| ||||||||||
Sbjct 119 TCTTCATCGTTTTCCGCATATTCGCTATCTCGCATCACCGGTGGTGCTCTAATTCCGTCG 178
Query 199 CAGCAGCAACGATCGATTACCTCCACGGCGCCGCTTAATGGATGGATGGATTCGATCAAA 258
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAGCA-C--CGATCGATTACCTCCACGGCGCCGCTTAATGGATGGATGGATTCGATCAAA 235
Query 259 GGTGTTTTTACCGGGAACAAGGATACTCCTTTAGAAGAATCAAATCTACCCGTTGAAGCT 318
|| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 236 GGCGTTTTTACCGGGAATAAGAATACTCCTTTGGAAGAATCAAATCTACCCGTTGAAGCT 295
Query 319 TTCACTCTTCTCCGATTTGCTGATGAATTGAAGAATGCTAGACGGTTAGGGAAATTCAAG 378
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 296 TTCACTCTTCTCCGATTTGCTGATGAATTGAAGAATGCTAGAAGGTTAGGGAAATTCAAG 355
Query 379 CAGTACATTGTGGGACGAAGCAGCGAGGCCACTTTTGCTGATGCATTTGAGAAACAAGAA 438
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 356 CAGTACATTGTGGGTCGAAGCAGCGAGGCTACTTTTTCTGATGCATTTGAGAAACAAGAA 415
Query 439 GCTGTTATTAGATATCTTGGAGCTCTTGATGCTACAGGAGAGAATCTCCAAGCGAGTCAA 498
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 416 GCTGTTATTAGGTATCTTGGAGCTCTTGATGCTACAGGAGAGAATCTTCAAGCGAGTCAA 475
Query 499 AAGCAAGATGCGGCTAAACATTGCAAATGCACTATAACTGATGTGGAGAATACGCTGTCC 558
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 476 AAGCAAGATGCGGCTAAACATTGCAAATGCACGATAACAGATGTGGAGAATACGCTGGCC 535
Query 559 AAATTTACTTGGGCCAGGCAAGCTCACAAGAAGATGACAGAGTTGAAAGAAGGAGGCAAA 618
|| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 536 AAGTTTACTTGGGCAAGGCAAGCTCACAAGAAGATGGCAGAGTTGAAAGAAGGAGGCAAA 595
Query 619 CCGTTACCAAAGAATATGGGAGAGCTGCAAAAAATGATGGGGTCAACACCAATGGATCTG 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CCGTTACCAAAGAATATGGGAGAGCTGCAAAAAATGATGGGGTCAACACCAATGGATCTT 655
Query 679 GCGAGATCAAACTTAGCCAAAAGTGGGCAGATCAGCCGCAATGCACTTTGTCCCTGTGGT 738
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 656 GCGAGATCAAACTTAGCCAAAAGTGGGCAGATCAGCCGCAATGCACTTTGTCCATGTGGT 715
Query 739 TCCAAAAAGAGATATAAAAGATGTTGCGGAAAGGATTGAAGAACACAGAAGTTGATCCAA 798
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 716 TCCAAAAAGAGATATAAAAGATGTTGCGGAAAGGATTGAAGAACACACAAGTTGATCGAA 775
Query 799 A 799
|
Sbjct 776 A 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5