BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04960.3
Length=2030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477773 jgi|Araly1|477773|fgenesh2_kg.3__474__AT3G04960.3 2686 0.0
Ahg340677 jgi|Araly1|340677|fgenesh1_pg.C_scaffold_3000440 505 6e-142
> Ahg477773 jgi|Araly1|477773|fgenesh2_kg.3__474__AT3G04960.3
Length=2042
Score = 2686 bits (1454), Expect = 0.0
Identities = 1872/2066 (91%), Gaps = 60/2066 (3%)
Strand=Plus/Plus
Query 1 TTTCTGGTaaaaattgtctctttctctcttc--tt-ttc-t--t---tctacaaaaacag 51
|||||||||||||| |||||||||||||||| || ||| | | |||||||||||||
Sbjct 1 TTTCTGGTAAAAATGGTCTCTTTCTCTCTTCTTTTCTTCTTAATAAGTCTACAAAAACAG 60
Query 52 aaacaaaaataaaaagtaaagctttctctaaaaaatctctcctttatcttcttctagctc 111
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 61 AAACAAAAATAAAAATTAAAGCTTTCTCAAAAAAATCTCACCTTTATCTTCTTCTTCCTC 120
Query 112 ttcttTGTG-CCTCTTTCACCATGCTGAGTACAGAGAGAACTAAGTTCAGATCCATGGAA 170
|||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 -TCTTTGTGCCCTCTTTCAACATTCTGAGTACAGAGAGAACTAAGTTTAGATCCATGGAA 179
Query 171 CCTGCAACTTCTTCACCATTGCCACGAGACACGTCGGAGCAGGATCCCGCGCTGGCGCAG 230
||||||| ||||||||||||||||| | | | || | ||| | || |||
Sbjct 180 CCTGCAAATTCTTCACCATTGCCAC--G--A-----G-GC---A---CGC-C-GGAGCAA 221
Query 231 AGTGAAGATCAGTCTCAAGGAAGACTTAGGGTTTCTGCTTATGACCTTATGGTAGTAGAC 290
|||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 222 AGTGAAGATCAGTCTCGAGGAATACTTAGGGTTTCTGCTTATGAGCTTATGGTAGTGGAC 281
Query 291 AGTGATTTAGAGGGATTAGATCAAAGAAAGGAAGAGATGCGTAACATTTTTGATGATATT 350
|||||||||||||| ||||| |||| |||||| || |||||||| || ||| || | |||
Sbjct 282 AGTGATTTAGAGGGGTTAGACCAAAAAAAGGAGGACATGCGTAAAATGTTTAATCAGATT 341
Query 351 CAGGATAAAGCTTCATTAATTCTTCAGTTCTCACTTAAGTGGGAAGAAATCGACGACAGG 410
||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 342 CAGGATAAAACTTCACTAATTCTTCAGTTCTCGCTTAAGTGGGAAGAAATCGACGAGAAG 401
Query 411 TTTGGTTTTCTAAAGCAACGAGCCAT-G--G-A-----GAAGGAGGTCTCTGTCCGGAAT 461
|||||||||||||||||||||||||| | | | |||||||| ||||| |||||
Sbjct 402 TTTGGTTTTCTAAAGCAACGAGCCATGGAAGTATCTTTGAAGGAGGAATCTGTAAGGAAT 461
Query 462 CAGATTCTGGAGCTGGAGAAGAAGGAAGAGCGACTGAGGCTTGTTGAAGAAAGAGAGAGG 521
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 462 CAGATTCTGGAGCTGGAGAAGAAGGAAGAGAGGCTGAGGCTTGTTGAAGAGAGAGAGAGG 521
Query 522 AAGATTGAGGCATCCTTCAGTACATTGCAGGAGAAAGGAAATGAATCTGATCTGATACTG 581
|||||||||| ||| ||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 522 GAGATTGAGGCTTCCATCAGTGCCTTGCAGGAGAAAGAAAATGAATCTGATCTGATACTG 581
Query 582 TTAATGGAAGCGAATGTGATGAGATTGGTTCTTCAAATGCAGTTTGAACAAGTGGTGGTT 641
|| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 582 TTTATGGAAGCGAATGTGATGAGATTGGTTCTGCAAATGCAGTTTGAAGAAGTGGTGGTT 641
Query 642 GCTCAGCTCAACGCCCAAGAGAACTTTCTTGGTTCGCTCCATGATTCGATGATGAAGAAG 701
||||||| ||||| |||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 642 TCTCAGCTTAACGCTCAAGAGAAATTTCTTGGTTTGCTCCATGATTCGGTGATGAAGAAG 701
Query 702 CATGAAGAGCTAATGACAGAGCTTGAAGCAAGGAAAAATGAGGTTGCTTTGATTTCTAAG 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CATGAAGAGCTAATGACAGAGCTTGAAGCAAGGAAAAATGAGGTTGCTTTGATTTCTAAG 761
Query 762 ACGATCGATGCCAAGACTTGTGATTTAGACATGAAAGTCAAAGACTTTGATCTTAAGCAA 821
|||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 762 ACGATCGATGACAAGACTTGTGATTTAGAGATGAAAGTTAAAGACTTCGATCTTAAGCAA 821
Query 822 ACAACAGAGTCTGAGAGAATGAGAAAAGAGACTGAGCTGATGGAAACATCTCTTAAGCAA 881
| | | |||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 822 ATAGCTGAGTCTGAGAGAATGAGAAAGGAGACTGAGGTGGTGGAAACATCTCTTAAGCAA 881
Query 882 CTTGAAGCCAGGGAGAATGAGCTTAGGTTGCTTAATGAGACCATCCAAGGGAAATCGATG 941
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 CTTGAAGCGAGGGAGAATGAGCTTAGGTTGCTTAATGAGACCATCCAAGAGAAATCGATT 941
Query 942 GAGCTGGAGAAGAAAGAAGTCAACTTTCAACTGAAACATGAAGCAGCAGCCAGAGAGACT 1001
|| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 942 GAACTGGAGAAGAAAGAAGAGAACTTTCAACTGAAACAAGAAGCAGCAGCCAGAGAGACT 1001
Query 1002 GAAGTGAAGAACAAGTTTCTTGAGTTAAAGGAAAAGAAACTTGAAGAAAGGGAGCAACAT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1002 GAAGTGAAGAACAAGTTTCTTGAGTTAAAGGAAAAGAAACTTGAAGAAAGGGAGAAAGGT 1061
Query 1062 TTGGAGTTGAAACAGAGaaaaaaagaaaaaCCAGCAATAAGA-GCAGAGACTCGTAAGAG 1120
|||||||| ||||||||| ||| |||| ||| ||||||| || |||||||||||||||||
Sbjct 1062 TTGGAGTTAAAACAGAGAGAAATAGAAGAACGAGCAATA-GAAGCAGAGACTCGTAAGAG 1120
Query 1121 ATCTAGGCTTGAATATGAGTCTCCATTGTCGGCAGAGAAGGGTAGATATGCTGAGACTCT 1180
| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct 1121 AACTAGGCTTGAATATGAGTCTCCATTGTCAACAGAGAAGGGTAGAGATGGTGAGACTCT 1180
Query 1181 GATTCGCCCTGGAAAAAAGCAAGTGCAGAAAAGAGAGGCTCATGAAATTATCTACATTGA 1240
||||| |||||||||||||||||| |||| |||||||||||||||| || ||| ||| ||
Sbjct 1181 GATTCTCCCTGGAAAAAAGCAAGTACAGAGAAGAGAGGCTCATGAAGTTGTCTGCATAGA 1240
Query 1241 TGAAGATGAGCCATTCAACT-GTCCTGATCCAGACTTTCACGATTTTAACAACACAATGA 1299
||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct 1241 TGAAGATAAGCCATTCA-CTTGTCCTGATCCAGACTTTCACGATTTTAACAACACAATAA 1299
Query 1300 GCTCTTTCGCTGTAGGTCAAGTATGGGCTCTATATGATCCTGTAGATGATATGCCTAGAT 1359
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1300 GCTCTTTCGCTGTTGGTCAAGTATGGGCTCTATATGATCCTATAGATGATATGCCTCGAT 1359
Query 1360 ACTATGCTGAGATCAGGAAAGTATTGCAACCTCAGCTGAGTTTACGGGTGACATGGCTCG 1419
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 1360 ACTATGCTCAGATCAGGAAAGTATTGAAACCTCAGCTGGGTTTACGGGTGACATGGCTTG 1419
Query 1420 AATCATTACAGAC--CACA----GAGGAACCAATTCCTGCTTGTGGGAGATTCGAACATG 1473
||||| ||||||| || | |||||||||||||||||||||||||||||| ||||||
Sbjct 1420 AATCAGTACAGACATCAGAAAACGAGGAACCAATTCCTGCTTGTGGGAGATTCAAACATG 1479
Query 1474 GAAAA------TCAGAGACCAGTAGCCACTTGATGTTTTCTCATGAGATGTA-TCACACC 1526
||||| ||||||||||| ||||||||||||||||||||||||||||| | || |
Sbjct 1480 GAAAACCAGAGTCAGAGACCAGAAGCCACTTGATGTTTTCTCATGAGATGTACTG-CATC 1538
Query 1527 ATACGAGGCCAATATGTCACTA-TAAACCCGAGAAAAGGCGAGACGTGGGCACTTTTCGG 1585
| ||| ||| || |||||| || |||||||||||||||||||||||||||| |||||| |
Sbjct 1539 AAACGTGGCAAAAATGTCA-TAATAAACCCGAGAAAAGGCGAGACGTGGGCCCTTTTCAG 1597
Query 1586 AGATTGGACCAAGACTTGGAAGAGTCACAGTGAGCAACAAAAGACTCCTTACAGTTACGA 1645
||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct 1598 AGATTGGACCAAGACTTGGAAGAGTCACAGTGAGCAACACAAGTCTCCTTACAGATACGA 1657
Query 1646 CTTTGTGGAAGTCGTGACTGAATTTGACAGTGATCGAGGCATTGGAGTGG-CTTATCTAG 1704
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1658 CTTTGTGGAAGTCCTGACTGAATTTGACAGTGATCGAGGCATTGGAGTGGGCT-ATCTAG 1716
Query 1705 GGAGAGTGGAAGGATTCACATCAGTGTATGAACGTGCTGCGCAAAATGGTCTTGTCGAAA 1764
| |||||||| |||||||||||| ||||| ||| ||||| |||||||||||||||| |||
Sbjct 1717 GAAGAGTGGAGGGATTCACATCATTGTATAAACATGCTGAGCAAAATGGTCTTGTCAAAA 1776
Query 1765 TCATGATATCATGTGATGAAATGCTTAGGTTTTCTCATAGAGTTCCATCTTTCAAAATGA 1824
| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1777 TTATGATATCATGTGATGAAATGGTTAGGTTTTCTCATAGAGTTCCGTCTTTCAAAATGA 1836
Query 1825 CTGGAGATGAGAAAGAAGGAGTCCCAGCTGGCTCTTTTGAGCTAGACCCTGCTGCTGTTC 1884
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1837 CTGGAGATGATAAAGAAGGAGTCCCAGCTGGCTCTTTTGAGCTAGATCCTGCCGCTGTTC 1896
Query 1885 CTCGAGTTTATCTTAAAGATGCTAAGGTCAAAGAAGAAAAGATGGAGCCCATAGTCTTGG 1944
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1897 CTCGAGAGTATCTTAAAGATGCTAATGTCAAAGAAGAAAAGATGGAGCCCATAGTCTTGG 1956
Query 1945 TTTGAGTTAAGTGCAAGTCTGATGTGTTCACTATTCTTTATCTATAAAATGTATTTAGAA 2004
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1957 TTTGAGTTAAGTGCAAGTCTGATGTGTTCACTGTTCTTTATCTATAAAATGTATTTAGAA 2016
Query 2005 GATGCATGGAACCGAATCTGTATTCC 2030
|||||||||||| | |||||||||||
Sbjct 2017 GATGCATGGAACTGTATCTGTATTCC 2042
> Ahg340677 jgi|Araly1|340677|fgenesh1_pg.C_scaffold_3000440
Length=1902
Score = 505 bits (273), Expect = 6e-142
Identities = 481/580 (83%), Gaps = 19/580 (3%)
Strand=Plus/Plus
Query 560 AAATGAATCTGATCTGATACTGTTAATGGAAGCGAATGTGATGAGATTGGTTCTTCA-AA 618
||||||||||||| ||| || ||| |||||| |||||| ||||||||||||| | ||
Sbjct 375 AAATGAATCTGATTTGAAACGGTTTCTGGAAGAAAATGTGGCGAGATTGGTTCTTGAGAA 434
Query 619 TGCAGTTTGAACAAGTGGTGGTTGCTCAGCTCAACGCCCAAGAGAACTTTCTTGGTTCGC 678
|||| |||| || |||||||||||||||| ||||| || ||||| || ||
Sbjct 435 -GCAGAATGAAGAAATGGTGGTTGCTCAGCTTAACGCACATGAGAA--------ATT-GC 484
Query 679 TCCATGATTCGATGATGAAGAAGCATGAAGAGCTAATGACAGAGCTTGAAGCAAGGAAAA 738
| || | |||||||| | ||||||||||||||| || | |||| ||||||| |||| |
Sbjct 485 TTCAGGGTTCGATGAAGCTGAAGCATGAAGAGCTTATCAGAGAGGTTGAAGCGAGGAGAG 544
Query 739 ATGAGGTTGCTTTGATTTCTAAGACGATCGATGCCAAGACTTGTGATTTAGACATGAAAG 798
| |||||||||||| |||| ||| | |||||||||||| ||||||||||||| |||||||
Sbjct 545 AGGAGGTTGCTTTGCTTTCCAAGTCCATCGATGCCAAGGCTTGTGATTTAGATATGAAAG 604
Query 799 TCAAAGACTTTGATCTTAAGCAAACAACAGAGTCTGAGAGAATGAGAAAAGAGACTGAGC 858
| || | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 605 TGAAGGCCTTTGATCTGAAGCAAACAACAGAGTCTGAGAGAATGAGAATGGAGACTGAGC 664
Query 859 TGATGGAAACATCTCTTAAGCAACTTGAAGCCAGGGAGAATGAGCTTAGGTTGCTTAATG 918
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 665 TGATTGAAACATCTCTTAAGCAACTTGAAGCGAGGGAGAATGAGCTTAGGTTGCTTAATG 724
Query 919 AGACCATCCAAGGGAAATCGATGGAGCTGGAGAAGAAAGAAGTCAACTTTCAACTGAAAC 978
|||||||| ||| ||||||||| || |||||||||||||||| ||||||||||||| ||
Sbjct 725 AGACCATCAAAGAGAAATCGATTGAACTGGAGAAGAAAGAAGAGAACTTTCAACTGATAC 784
Query 979 ATGAAGCAGCA-GCCAGAGA-GACTG-AAGTGAAGAACAAGTTTCTTGAGTTAAAGGAAA 1035
| ||||| || |||||||| | || |||| |||| |||||||||||| ||| ||| |
Sbjct 785 AACAAGCA-CAAGCCAGAGATG--TGGAAGTTAAGATTAAGTTTCTTGAGCTAAGGGAGA 841
Query 1036 AGAAACTTGAAGAAAGGGAGCAACATTTGGAGTTGAAACAGAGaaaaaaagaaaaaCCAG 1095
|| |||||| |||||||||| || | |||| |||||||||||| || | || ||| |
Sbjct 842 AGGAACTTGGAGAAAGGGAGAAAGAGCTGGAATTGAAACAGAGAGAAGTACAAGAACGAT 901
Query 1096 CAATA-AGAGCAGAGACTCGTAAGAGATCTAGGCTTGAAT 1134
||||| | ||| | |||||| |||||| ||||| ||||||
Sbjct 902 CAATACA-AGCTGGGACTCGAAAGAGAACTAGGGTTGAAT 940
Score = 220 bits (119), Expect = 2e-56
Identities = 273/342 (80%), Gaps = 31/342 (9%)
Strand=Plus/Plus
Query 205 CGGAGCAGGATCCCGC-GCTGGCGCAGAGTGAAGATCAGTCTCAAGGAAGACTTAGGGTT 263
|||| ||||| || || ||| || || | ||||||||| |||| ||| | ||||||
Sbjct 47 CGGATCAGGAACCGGCGGCT-GCACAAACTGAAGATCATTCTC---GAA-A--AAGGGTT 99
Query 264 TCTGCTTATGACCTTATGGTAGTAGACAGTGATTTAGAGGGA-TTAGATCAAAGAAA-GG 321
||||||||||| ||||||||||| |||||||||||||||||| || ||| ||| ||| ||
Sbjct 100 TCTGCTTATGAGCTTATGGTAGTGGACAGTGATTTAGAGGGAGTT-GAT-AAAAAAATGG 157
Query 322 A-AGAGATGCGTAACATTTTTGATGATATTCAGGATAAAGCTTCATTAATTCTTCAGTTC 380
| | || ||||||| || || || | |||||| | |||||||||| | ||||| |||||
Sbjct 158 ACA-AGTTGCGTAATATCTTAGAACAGATTCAGAAGAAAGCTTCATCAGTTCTTGAGTTC 216
Query 381 TC-ACTTAAGTGGGAAGAAATCGACGACAGG-TTTGG-TTTTCTAAAGCAACGAGCC--- 434
|| ||| ||||||||||||||| | ||| |||| ||| |||||||||||||||
Sbjct 217 TCGCCTT-GGTGGGAAGAAATCGATG--AGGAATTGGATTTGCTAAAGCAACGAGCCATG 273
Query 435 --A-TGGA---GAAGGAGGTC-TCTGTCCGGAATCAGATTCTGGAGCTGGAGAAGAAGGA 487
| |||| |||||||| | ||| | |||||||||||||||||||||||||||||
Sbjct 274 GAAGTGGATTTGAAGGAGG-CATCTCTAAAAAATCAGATTCTGGAGCTGGAGAAGAAGGA 332
Query 488 AGAGCGACTGAGGCTTGTTGAAGAAAGAGAGAGGAAGATTGA 529
|||||| || | |||||||||||| |||| ||||||||||||
Sbjct 333 AGAGCGTCTTAAGCTTGTTGAAGAGAGAGCGAGGAAGATTGA 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76332850980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5