BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04970.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928069 jgi|Araly1|928069|scaffold_300526.1 1999 0.0
> Ahg928069 jgi|Araly1|928069|scaffold_300526.1
Length=1239
Score = 1999 bits (1082), Expect = 0.0
Identities = 1181/1228 (96%), Gaps = 9/1228 (1%)
Strand=Plus/Plus
Query 58 TACGAAAAATGGCGGTACAGTGGCTTTTGGTGTGTCACGGGATGATGACGTTGACGGTGG 117
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 16 TACG-AAAATGGAGGTACAGTGGCTTTTGGTGTGTCACGGGATGATGACGTTAACGGTGG 74
Query 118 TCATCTCCTTCCTCTGTGGTCAATGGCCAATCTTCAAAGGCACACCTTTTCAATGGATTC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TCATCTCCTTCCTCTGTGGTCAATGGCCAATCTTCAAAGGCACACCTTTTCAATGGATTC 134
Query 178 ACTACTTCCTCACTTTCGGCGCCTACGATTACTTCCTGAGATTTGTCGGATTTGTGTTTG 237
|||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 135 ACTACTTCATCACTTTCGGCGCTTACGATTACTTCCTGAGATTTGTCGGATTGGTGTTTG 194
Query 238 GTTCCAAGGGTACGGACGTGATTCTTTCTGTGGAGTATTTCTGCTGCGATCGTCCTAATC 297
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 195 GTTCCAAGGGTACGGACGTGATTCTGTCTGTGGAGTATTTCTGCTGCGATCGTCCTAATC 254
Query 298 CGATTCTGCAAGTCATATATATAGCCATTATGGGATCAACCTACTTTTTGACTGCAAAAT 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CGATACTGCAAGTCATATATATAGCCATTATGGGATCAACCTACTTTTTGACTGCAAAAT 314
Query 358 CTTCTTTCATCTATATACCTGGATATTATCTTGGCGATGTTCACAAGTACACAAGCTTTC 417
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 315 CTTCCTTCATCTATATACCTGGATATTATATTGGCGATGTTCACAAGTACACAAGCTTTC 374
Query 418 TAGCTGTTATTGTTGGTGTCATACTTTTCTTATTAACAT-GCTTTTCTGATCCAGGTACT 476
|| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 375 TAACTGTTATTGTTGGTGCCATACTTTTCTTATTAAC-TAGCTTTTCTGATCCAGGTACT 433
Query 477 GTGAACGCTGAGAATGTTTCACGGTACATTTCTGCTTACCCCTATGATGATATCATTTAC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GTGAACGCTGAGAATGTTTCACGGTACATTTCTGCTTACCCCTATGATGATATCATTTAC 493
Query 537 TCCAAGAAAGAATGTTCTACGTGTAAAATCCCAAAGCCTGCTAGATCCAAGCATTGCAGC 596
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TCGAAGAAAGAATGTTCTACGTGTAAAATCCCAAAGCCTGCTAGATCCAAGCATTGCAGC 553
Query 597 ATCTGCAACCGCTGTGTGGCTCGGTTTGATCATCATTGTGGGTGGATGAATAACTGTATA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 ATCTGCAACCGCTGTGTGGCTCGGTTTGATCATCATTGTGGGTGGATGAATAACTGTATA 613
Query 657 GGAGAAAGGAACACCAAATATTTCATGGCTTTCCTCTTGTGGCATTTCCTTCTTTGCTTG 716
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GGCGAAAGGAATACCAAATATTTCATGGCTTTCCTCTTGTGGCATTTCCTTCTTTGCTTG 673
Query 717 TACGGAACAGTTGCCATCGGATTTATTCTTGCTGGGCGAGTAAAAGAACTCCGTGTTGTA 776
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 674 TACGGAACAGTAGCCATCGGGTTTATTCTTGCTGGGCGAGTAAAAGAACTCCGTGTTGTA 733
Query 777 CATATTTTAACTGTCTATTACGGTGTAGATAAATCTTTCCGAAGTTTAGCTCCTCGAGTT 836
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 734 CATATTTTAACTGTCTATTACGGCGTAGATAAATCTTTTCGAAGCTTAGCTCCTCGAGTT 793
Query 837 ATACAGTGGCTAGTTGGTACATACAACACCCAAATTCTCCTAATGGTGTTTCTCGCCATT 896
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 794 TTACAGTGGCTAGTTGGTACATACAACACCCAGATTCTCCTAATGGTGTTTCTCGCCATT 853
Query 897 GTTTCTCTCCTCCTCGCTGGCTTCTTCGCTTACCATGCAAATCTCTGCTTAACCAACACA 956
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 854 GTTTCTCTCCTCCTCGCTGGCTTCTTCGCTTACCACGCAAATCTCTGCTTAACCAACACA 913
Query 957 ACAACTAATGAGACGTTTAAGTGGAGAGAGTATATAAGCTTAAATAAGAAGCTCAGTGAA 1016
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 914 ACAACTAATGAGACGTTTAAGTGGAGAGAGTATATAAGCTTGAAGAAGAGGCTCAGTGAA 973
Query 1017 GCTAAGGCGAGCGCTGCTGCTCTCAAGGCCGGGATGTCATGTGAA-CTAAAGAAGCCATC 1075
|||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
Sbjct 974 GCTAAGGCGAGCGCTGCTGCTCTCAAGGCCGGAATGTCATGTGAATC-AAAGAAGCCAAC 1032
Query 1076 AGCTGAAAGCAAATGCTTCGGGCTTTGTGGAAGATCCTCTGCCCGTGAAGAAG-A-A-GT 1132
||||| |||||||||||||||| ||||||||||||||||||||| |||||||| | | |
Sbjct 1033 AGCTGCAAGCAAATGCTTCGGGATTTGTGGAAGATCCTCTGCCCATGAAGAAGGAGAAGC 1092
Query 1133 CAAAGCCGACGCTATAGCGAAACGGAATTTGTATGATAGAGGAAGTTTTCAAAACGTTTC 1192
||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CAAAGCCGAAGCGATAGTGAAACGGAATTTGTATGATAGAGGAAGTTTTCAAAACGTTTC 1152
Query 1193 TGAGATTGTTTTCCCTTTATCATCAAGACCATCTTCTTCCAACAAATCAAAACGAAAATC 1252
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1153 TGAGATTGTTTTCCCTTTATCATCAAGACCATCTTCTTCCAGCAAATCAAAACGAAAATC 1212
Query 1253 GGAATAGTTAGTctttttcttatatgta 1280
||||||||| ||| ||| |||| |||||
Sbjct 1213 GGAATAGTTCGTCCTTT-CTTACATGTA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5