BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04980.1
Length=3498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477778 jgi|Araly1|477778|fgenesh2_kg.3__479__AT3G04980.1 5097 0.0
Ahg952006 jgi|Araly1|952006|scaffold_29400002.1 2641 0.0
> Ahg477778 jgi|Araly1|477778|fgenesh2_kg.3__479__AT3G04980.1
Length=3459
Score = 5097 bits (2760), Expect = 0.0
Identities = 3251/3486 (93%), Gaps = 42/3486 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCTGGTGATTTTGTTGGAGCTCATAAA-TTCGTTACCAAGGCGCAAAGACTCTT 59
||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1 ATGGAGGCTGGTGATTTTGTTGGAGCTCA-AAAGTTTGTTACCAAGGCGCAAAGACTCTT 59
Query 60 CCCCAATCTCGAAAACATAGTGCAGATGATGACCATATGTGATGTGCATTCTTCTGCAAT 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 CCCCAATCTCGAAAACATAGTGCAGATGATAACCATATGTGATGTGCATTCTTCTGCAAT 119
Query 120 TAAGAAAATCAAAGGGCTTGACGATTGGTATGGTGTCCTTCAGGTTCAGCCATATGCTGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 TAAGAAAATCAAAGGGCTTGACGATTGGTATGGTGTCCTTCAGGTTCAGCCATTTGCTGA 179
Query 180 TGCTGACACAATCAAGAAGCAATACAGAAAGCTTGCGCTGCTTCTCCATCCAGACAAAAA 239
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TGCTGATACAATCAAGAAGCAATACAGAAAGCTTGCGCTGCTTCTCCATCCTGACAAAAA 239
Query 240 CAAGTTTGCTGGAGCAGAGGCTGCTTTCAAGTTGGTTGGGGAAGCAAACAGATTGCTTTC 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAGTTTGCTGGTGCAGAGGCTGCTTTCAAGTTGGTTGGGGAAGCAAACAGATTGCTTTC 299
Query 300 TGATCAGATCAAACGTTCTCAGTATGATAACAGATACAGATCCCATTCAATGTTTGCTAA 359
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 TGATCAGATAAAACGTTCTCAGTATGATAACAGATACAGATCCCATTCAATGCTTGCTAA 359
Query 360 CAGGCATGTGAATGTATACTCGGGTCGCCACTGTGCAGCTACAAACAATGCTGCGGAGAA 419
|| ||||||| ||| |||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 360 CAAGCATGTGCATGCATACTCGGGTCGCCACTGTGAAGCTACAAACAGTGATGCGGAGAA 419
Query 420 TATTGCTGGTGTTTTCACATTCTGGACACGTTGCAGGCACTGTGGCCAGTGTTATAAATA 479
|||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TATTGCAAGTGTTTACACATTCTGGACACGTTGCAGGCACTGTGGCCAGTGGTATAAATA 479
Query 480 CTTGAGAGAATATATGAACAC-TTCTATGCACTGTTCCAGTTGCCAGAAATCTTTTGTCG 538
| |||||||||||||||| || | |||| ||||||||||||||| |||||||| |||||
Sbjct 480 CCTGAGAGAATATATGAATACAGT-TATGTACTGTTCCAGTTGCCGGAAATCTTATGTCG 538
Query 539 CCTGCAAAATGAGGTGTGATGGAGTGCCACCTAGTAGTTCAACCGCTGGTAGAAAAGAAT 598
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 539 CCTGCAACATGAGGTGTGATGGAGTGCCACCTAGTAGTTCAACTGCTGGTAGAAAGGAAT 598
Query 599 TCCAAGATCAAGTGATGTCTAATACATCTCGGCAAAATGCTTCTACAGCAGCAGAATCAG 658
| ||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 TTCAATATCAAGGGATGTATAATACATCTCGGCAAAATGCTTCTACAGGAGCAGAATCAG 658
Query 659 GCAGCTCAGCAGCTGATATGGGTAAGAATGGGAAAGTC-GGAGGGAAAGTCAACAAGAAG 717
|| | ||||||||||| |||||||||||||||| || | |||| ||| |||||||||||
Sbjct 659 GCGGTTCAGCAGCTGAGATGGGTAAGAATGGGACAG-CTGGAGAAAAACTCAACAAGAAG 717
Query 718 AATCAAGAAAAACAGAAAAATGGTGCTGTTAACAGGGGAA-CTAAGAAAGAAGAAGGTTG 776
|||||||||||||||||||| ||||||| ||||| ||||| | |||||||| || |||||
Sbjct 718 AATCAAGAAAAACAGAAAAAAGGTGCTGCTAACA-GGGAACCCAAGAAAGATGAGGGTTG 776
Query 777 TACAGAGAATGACGCTGAAGGAAGAAAACCCCAGACTAGTGAGACAG-GTACGAATATTT 835
|||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||| ||
Sbjct 777 TACAGAGAATGACGCTGAAGGAAGAACCCCCCAGAATAGTGAGACAGCG-ACGAATAATT 835
Query 836 CTGCTGAAATGCCTAAAGCTGATGTATTGAAGCCGCAACATCAAGTAAAAGAAGAACCAG 895
|||||||||| ||||| |||||||||||||||||||| ||||| || ||| || |||||
Sbjct 836 CTGCTGAAATACCTAAGGCTGATGTATTGAAGCCGCAGCATCAGGT-AAA-AA-AACCAC 892
Query 896 ATACTAGTGCAGAAAAGTCAATACCTGATTTATCAGCTCCACAGAAGAATCGGGCACCCA 955
|||||||||||| |||||||||||||||||||||||||||| ||||||||| | || |||
Sbjct 893 ATACTAGTGCAGCAAAGTCAATACCTGATTTATCAGCTCCAAAGAAGAATCAGACAGCCA 952
Query 956 AAAAGAAGAGGAAAGTTGTTGAAGAATCCTCTAAGAGTTTTGAGGTTGATAGCTCTGATA 1015
|||||||||| |||| ||| || |||||||||||||||||||| |||||||| | |
Sbjct 953 AAAAGAAGAGAAAAGCTGTCGAGGAATCCTCTAAGAGTTTTGAAGTTGATAG--C---T- 1006
Query 1016 CTGCTGGGGCTAAAACAGATACAAATGAACATAATAAGAGGAAGTCATCAAGGAAAAAGC 1075
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 1007 CTGCTGGGGCTAAAACAGATACATATGAATATAATAAGAGGAAGTCATCGAGGAAAAAGC 1066
Query 1076 CACAGGTTTCTTACGCAAAGGAGGGAAGCGATGGTGATTTTGTCAGCCCTCCAAATAAAA 1135
||||||||| || | |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1067 CACAGGTTTTTTGCTCAAAGGGGGGAAGCGATGGTGATTGTGTCAGCCCTCCAAATAAAA 1126
Query 1136 AGACAAAATCAGGTTTTGAATTTGAGTCTGAGCCTAATAAGAAGCAAACGGCTGAGGATA 1195
|||||||||||| || |||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 1127 AGACAAAATCAGCTTGTGAATTTGAGTCTGAGTTTAATACGAAGCAAACTGCTGAGGATA 1186
Query 1196 ATAAGTCACCTAAACTGGCTGTTTCTGGTGTTTCTTCTGCTTCTTCACATTCTTATAAAG 1255
|| ||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1187 ATCAGTCATCTGAACTGGCTGATTCTGGTGTTTCTTCTGCTTCTTCACATGCTTATAAAG 1246
Query 1256 GAAAGGCCAAGAAAAATGCGCATTCTGGAAATGAAGACAACTTGTCA-GCCAAAAACAAA 1314
|||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||
Sbjct 1247 GAAAGGCCAAGAAAAATGAGCATTCTGGAAATGAAGACATCTTGTCATG-CAAAAACAAA 1305
Query 1315 GTTAGTGAAGGCTGTGATGGTAATGGAGAAGATGCAGCCTTGTTGAGCAAGATTGGTAGA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 GTTAGTGAAGGCTGTGATGGTAATGGAGAAGATGCAGCCTTGTTGAGCAAGATTGGTAGA 1365
Query 1375 GTTGAAAAAGGATACAAAGCTAATGAAAATTC-TAATCCGCTTGATATACCTGATTTAGA 1433
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||
Sbjct 1366 GTTGAAAAAGGATACAAAGCTAATGAAAAT-CATAATCCGCTTGATGTACCTGATCTAGA 1424
Query 1434 GTTCAGTGTGTTTAAAGTTGAACGGAAAACAGAAGATTTTGCTGTCAATCAAGTGTGGTC 1493
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1425 GTTCAGTGTGTTTGATGTTGAATGGAAAACAGAAGATTTTGCTGTCAATCAAGTGTGGTC 1484
Query 1494 TACTACAACTGATTGTAGAGATGGTATGCCTAGGAAATATGCTCGGGTAAAGAAAGTACT 1553
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||| || ||
Sbjct 1485 TACTACAACTGATTCTAGAGATGGTATGCCTAGGAAATATGCTCAGATAAAGAATGTGCT 1544
Query 1554 GAATGGCGAGTTCAAGCTGCGGATCACCTACCTTGATCCTGTACTGGATAAGACTGATGA 1613
|||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||
Sbjct 1545 GAATGGCGAGTTCAAGCTGCGGATTACCTACCTTGATCCTGTACTGGGTAATAATGATGA 1604
Query 1614 AAGTATTCCAGTTGCTTGTGGAAAGTTCAAAAATGGGAAAACAATGGAAGTTAAAGACAG 1673
||||||||||||||||||||||||||||||| |||||| ||||| ||||||| | ||| |
Sbjct 1605 AAGTATTCCAGTTGCTTGTGGAAAGTTCAAATATGGGACAACAAAGGAAGTTGAGGACCG 1664
Query 1674 CTCAATCTTTTCAGGTCAAATGCATCACTTGCGTTGCAAC-AATATTGTTTCCATCTACC 1732
||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||| |
Sbjct 1665 CTCAATCTTTTCAGGTCAAATGCATAACTTGCATTGCAACGAA-ATTGTTTCCATCTATC 1723
Query 1733 CAAGGAAAGGGGAAATATGGGCTATATTCAGAGAGTGGGAGGAGGAATGGAACACTAGTC 1792
||||||||||||||||||||||||| |||||||| ||| | | |||||||||||||||||
Sbjct 1724 CAAGGAAAGGGGAAATATGGGCTATTTTCAGAGAATGGAATGCGGAATGGAACACTAGTC 1783
Query 1793 TAAAAAAGCATAAATTTCCATATAAGTATGACTTTGTGGAAATTGTCAGTGATTTTCATG 1852
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 TAAAAAAGCATAAATTACCATATAAGTATGACTTTGTGGAAATTGTCAGTGATTTTCATG 1843
Query 1853 ATCTTAACGGGGTTGGAGTGGCCTATCTGGGAAAACTTAAAGGGTCTGTTCAGCTATTTC 1912
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 ATCTTAACGGTGTTGGAGTGGCCTATCTGGGAAAACTTAAAGGGTCTGTTCAGCTATTTC 1903
Query 1913 ACTGGGAGCCGCAGCATGGAATTTGCCAGATTCAATGTAGTCCGAAAGATATGCTTAGAT 1972
|||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1904 ACTGGGAGGCGCAGAATGGAATTTGCCAGATTCAATTTACTCCGAAAGATATGCTTAGAT 1963
Query 1973 TTTCTCACAAAGTACCAGCAGTCAAAATGACTGGAAAAGAGAAAGAATCTGTTCCACCTA 2032
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1964 TTTCTCACAAAGTACCAGCAGTCAAAATTACTGGAAAAGAGAAAGAATCTGTTCCACCTA 2023
Query 2033 ACTCATATGAATTGGATCCTGCTGCCTTACCAAAAGATATATTTCAGGTT-GATGCGGTT 2091
||||||||||| ||||||||||||| ||||||||||||||||||||| || | |||||||
Sbjct 2024 ACTCATATGAACTGGATCCTGCTGCATTACCAAAAGATATATTTCAGTTTAG-TGCGGTT 2082
Query 2092 GATATGGAGATGGATAGTGAGATCCTGAAAGGTAAAGCTGACGGCCCTTATAAGGTTGGA 2151
||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2083 GATATGGAGATGGATAGCGAGATCATGAAAGGTAAAGCGGACGGCCCTTATAAGGTTGGA 2142
Query 2152 GCGAAGGCCAAGGCAGTTCAAGAGACCGCATCATCTCCAAGGAAACGTCAGAAA-TCTGA 2210
| ||||||||| |||||| |||||||||| |||||||||||||||||| |||| |||||
Sbjct 2143 TCAAAGGCCAAGCCAGTTCCAGAGACCGCACCATCTCCAAGGAAACGTC-GAAAATCTGA 2201
Query 2211 TGATGATAATGATGATGGTGTATGCAGTAATCTTGGGGAAGTCATAGGCGGAAGCAACAG 2270
||||||||||| | || | |||||||||||||||||||||||||||||||||||||||
Sbjct 2202 TGATGATAATG--G-TG-T--ATGCAGTAATCTTGGGGAAGTCATAGGCGGAAGCAACAG 2255
Query 2271 AAGTCATATTTTTTCTTCTTGTGAAGTTGATGATAAGAACACATCAACCAAATCCAGAAA 2330
||| |||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||
Sbjct 2256 AAGCCATATTTTTTCTTCTTCTGAAGTTGATGAAAAGAACACACCAACCAAGTCCAGAAA 2315
Query 2331 GGATGGTGAGTCCACAGATGTTTTCAGACTTCGAAAATCTCCTCGTCTTCAAACAATTCC 2390
||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2316 GGATGCTGAGGCCACAGATGTTTTCAAACTTCGAAAATCTCCTCGTCTTCAAACAATTCC 2375
Query 2391 AAACCACCAAGGAGATGAGAAGAAAAGTGCTAAACAAGGCAACAAGATGAATACCCCAAA 2450
|| ||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 2376 AAGCCAACAAGGAGATGAGAAGAAATGTGTTAAACAAGGCAACAAGATGAATATCCCAAA 2435
Query 2451 GAAAATGGATAAGGGTCTTGTGACAGATTCTTTGGGTGTTGATGAAAAGAAAACATCAAA 2510
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 2436 GAAAATGGATAAGGGTCTTGTGACAGATTCTTTGGGAGTTGATGAAAAGAACACACCAAA 2495
Query 2511 ---GTCCAGAAAGAATGGTGAGGCCACAGATGTATTCAAACTTCGAAAATCTCCTCGTCT 2567
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2496 CAAGTCCAGAAAGAATGGTGAGGCCACAGATGTTTTCAAACTTCGAAAATCTCCTCGTCT 2555
Query 2568 TCAAACAATTCCAAGCCAACAAGGAGATGAGATGAAAAGTACTAAACAAGGCAATAAAAT 2627
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2556 TCAAACAATTCCAAGCCAACAAGGAGATGAGATGAAAAGTGCTAAACAAGGCAATAAGAT 2615
Query 2628 GAATACCCCGAAGAAAACTGATAAAGGTCTTGAGACAGATTCTTTGGGAGTCAGAAAATC 2687
||||||||| || ||||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 2616 GAATACCCCAAAAAAAACTGATAAGGGTCTTGTGACAGATTCTTTGGGAGTCGGAAAATC 2675
Query 2688 TCCCAATGGCATTCACCAACCAGCAGAGAGTCAGGAAGGAGAGAGCTCAAAGAAACAAGG 2747
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2676 TCCCAATGGCATTCACCAACCAGCAGAGAGTCAGGAAGGAGAGAGCTCGAAGAAACAAGG 2735
Query 2748 ATGCAATGGTGAAATACCGTCTCTGTCCAAGCAGAATGATTTGCCAACTCAGTTGGGTGG 2807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2736 ATGCAATGGTGAAATACCGTCTCTGTCCAAGCAGAATGATTTGCCAACTCAGTTGGGTGG 2795
Query 2808 TTCTACGTATAAGTCCCCTCGTACAACTCATGTGTCACCACATTGCAAAACACCTCGAAG 2867
||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2796 TTCTATGTATGAGTCCCCTAATACAACTCATGTGTCACCAAATTGCAAAACACCTCGAAG 2855
Query 2868 AAATGCCTTTGACTTCCAGAACCTGAGATCTGAAGACAAATTCG-AAGTTAATCAGATAT 2926
|||||||| ||||||| ||||||||||||||||||||||||||| || || |||||||||
Sbjct 2856 AAATGCCTCTGACTTCAAGAACCTGAGATCTGAAGACAAATTCGGAA-TTGATCAGATAT 2914
Query 2927 GGGCTATCTATAGCAATGACAATGGAATGCCCTTAGAGTATGTGAAGATCAAGAAAATTG 2986
||||||| ||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||
Sbjct 2915 GGGCTATTTATAGAAATGACAATCGAATGCCCTCAGAGTATGTCAAGATCAAGAAAATTG 2974
Query 2987 AAACCAAGCCTAAGTTTGTGCTACGTGGAACCCCGACAGAGCTGTATCCGCCATCTACAG 3046
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2975 AAACCAAGCCTAAGTTCGTGATACGTGGAACCCCGACAGAGCTGTATCCGCCATCTACAG 3034
Query 3047 AACCTGTGACCCGCACAGTGTCTTGTGGGGAATTCAAGTTGCTCAAAGGAAGACCCAAAA 3106
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 AACCCGTGACCCGCACAGTGTCTTGTGGGGAATTCAAGTTGCTCAAAGGAAGACCCAAAA 3094
Query 3107 TCATTCCTCATGCGAGCTTCTCACATCTGGTCAAACCCTTTGACAGTAGTAAGAGGTTCA 3166
|| |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |
Sbjct 3095 TCTTTCCTCATGCGAGCTTCTCACATCAGGTCAAACCCTTCGACAGTAGTAAGAAGTTTA 3154
Query 3167 GATTCAAAGTATACCCAAGGAAAGGTGAGATATGGGCCCTGTATAAGAACTGTGATAGCA 3226
| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 3155 TAGTCAAAGTATACCCAAGGAAAGGTGACATATGGGCTCTGTATAAGAACTGTGATAGCA 3214
Query 3227 CTGAAGAACCTGACATTGTAGAAGTGGTGGAAGATAACTGTGATGGGGAGATCGTAAAGG 3286
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3215 CCGAAGAACATGACATTGTAGAAGTGGTGGAAGATAACTGTGATGGGGAGATCGTAAAGG 3274
Query 3287 TGGTGGCTTTGACTGCTATGGGCTCTAGTTTTCAGAGGAAACAAGGGTCGGATGTGGGTT 3346
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 3275 TGGTGGCTTTGACTGCTGTAGGCTCTAGTTTTCAGAGGAAACAAGGGTCGAATGTGGGTT 3334
Query 3347 TAATTGACATTTCAAAGGCAGAAATGAGTAGATTTTCTCATCAGATTCCGGCTATCAGAC 3406
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3335 TAATAGACATTCCAAAGGCAGAAATGAGTAGATTTTCTCATCAGATTCCGGCTATCAGAC 3394
Query 3407 A-CCCAAAGAAGACAACAAGGCTAGTTAAAGGAGGATACTACTGGGAACTTGACCCTATA 3465
| ||||| || | |||| ||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 3395 AGCCCAA-GAGGGCAACCAGGTTAGTTGAAGGAGGATACTACTGGGAGCTTGACCCTATA 3453
Query 3466 GCAATT 3471
||||||
Sbjct 3454 GCAATT 3459
Score = 278 bits (150), Expect = 3e-73
Identities = 179/193 (93%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 2295 AGTTGATGATAAGAACACATCAACCAAATCCAGAAAGGATGGTGAGTCCACAGATGTTTT 2354
||||||||| ||||||||| ||| ||| ||||||||| |||||||| |||||||||||||
Sbjct 2472 AGTTGATGAAAAGAACACACCAAACAAGTCCAGAAAGAATGGTGAGGCCACAGATGTTTT 2531
Query 2355 CAGACTTCGAAAATCTCCTCGTCTTCAAACAATTCCAAACCACCAAGGAGATGAGAAGAA 2414
|| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 2532 CAAACTTCGAAAATCTCCTCGTCTTCAAACAATTCCAAGCCAACAAGGAGATGAGATGAA 2591
Query 2415 AAGTGCTAAACAAGGCAACAAGATGAATACCCCAAAGAAAA-TGGATAAGGGTCTTGTGA 2473
|||||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||
Sbjct 2592 AAGTGCTAAACAAGGCAATAAGATGAATACCCCAAAAAAAACTG-ATAAGGGTCTTGTGA 2650
Query 2474 CAGATTCTTTGGG 2486
|||||||||||||
Sbjct 2651 CAGATTCTTTGGG 2663
Score = 244 bits (132), Expect = 3e-63
Identities = 175/195 (90%), Gaps = 5/195 (3%)
Strand=Plus/Plus
Query 2488 GTTGATGAAAAGAA-A-A-CATCAAAGTCCAGAAAGAATGGTGAGGCCACAGATGTATTC 2544
|||||||||||||| | | || | |||||||||||| ||| ||||||||||||||| |||
Sbjct 2281 GTTGATGAAAAGAACACACCAACCAAGTCCAGAAAGGATGCTGAGGCCACAGATGTTTTC 2340
Query 2545 AAACTTCGAAAATCTCCTCGTCTTCAAACAATTCCAAGCCAACAAGGAGATGAGATGAAA 2604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2341 AAACTTCGAAAATCTCCTCGTCTTCAAACAATTCCAAGCCAACAAGGAGATGAGAAGAAA 2400
Query 2605 AGTACTAAACAAGGCAATAAAATGAATACCCCGAAGAAAACTG-ATAAAGGTCTTGAGAC 2663
|| |||||||||||| || ||||||| ||| ||||||| || |||| ||||||| |||
Sbjct 2401 TGTGTTAAACAAGGCAACAAGATGAATATCCCAAAGAAAA-TGGATAAGGGTCTTGTGAC 2459
Query 2664 AGATTCTTTGGGAGT 2678
|||||||||||||||
Sbjct 2460 AGATTCTTTGGGAGT 2474
> Ahg952006 jgi|Araly1|952006|scaffold_29400002.1
Length=3748
Score = 2641 bits (1430), Expect = 0.0
Identities = 1937/2167 (89%), Gaps = 93/2167 (4%)
Strand=Plus/Plus
Query 329 ACAGATACAGATCCCATTCAATGTTTGCTAACAGGCATGTGAATGTATACTCGGGTCGCC 388
||||||||||||||||||||||| ||||||| | ||| ||| ||| ||||||||||||||
Sbjct 1 ACAGATACAGATCCCATTCAATGCTTGCTAAAAAGCAAGTGCATGCATACTCGGGTCGCC 60
Query 389 ACTGTGCAGCTACAAACAATGCTGCGGAGAATATTGCTGGTGTTTTCACATTCTGGACAC 448
||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||
Sbjct 61 ACTGTGCAGCTACAAACAATGATGCAGAGAATATTGCAAGTGTTTACACATTCTGGACAC 120
Query 449 GTTGCAGGCACTGTGGCCAGTGTTATAAATACTTGAGAGAATATATGAACAC-TTCTATG 507
|||||||||||||||||||||| ||||||||||||||| ||||||| || || | ||||
Sbjct 121 GTTGCAGGCACTGTGGCCAGTGGTATAAATACTTGAGAAAATATATAAATACAGT-TATG 179
Query 508 CACTGTTCCAGTTGCCAGAAATCTTTTGTCGCCTGCAAAATGAGGTGTGATGGAGTGCCA 567
||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 180 TACTGTTCCAGTTGCCGGAAATCTTATGTCGCCTGCAACATGAGGTGTGATGGAGTGCCA 239
Query 568 CCTAGTAGTTCAACCGCTGGTAGAAAAGAATTCCAAGATCAAGTGATGTCTAAT--A--- 622
|||||||||||||| ||||| ||||| ||||| ||| |||||| ||||| |||| |
Sbjct 240 CCTAGTAGTTCAACTGCTGGCAGAAAGGAATTTCAATATCAAGGGATGTATAATACATCT 299
Query 623 ---C----ATCTCGGCAAAATGCTTCTACAGCAGCAGAATCAGGCAGCTCAGCAGCTGAT 675
| ||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 300 CGGCAAAAATCTCGGCAAAATGCTTCTACAGGAGCAGAATCAGGCGGTTCAGCAGCTGAG 359
Query 676 ATGGGTAAGAATGGGAAAGTC-GGAGGGAAAGTCAACAAGAAGAATCAAGAAAAACAGAA 734
|||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||
Sbjct 360 ATGGGTAAGAATGGGACAG-CTGGAAAGAAACTCAACAAGAAGAATCAAGAAAAACAGAA 418
Query 735 AAATGGTGCTGTTAACAGGGGAA-CTAAGAAAGAAGAAGGTTGTACAGAGAATGACGCTG 793
||| ||||||| ||||| ||||| | |||||||| || ||||||||||||||||||||||
Sbjct 419 AAAAGGTGCTGCTAACA-GGGAACCCAAGAAAGACGAGGGTTGTACAGAGAATGACGCTG 477
Query 794 AAGGAAGAAAACCCCAGACTAGTGAGACAGGTACGAATATTTCTGCTGAAATGCCTAAAG 853
|||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||| |
Sbjct 478 AAGGAAGAAACCCCCAGAATAGTGAGACAGGTACGAATAATTCTGCTGAAATACCTAAGG 537
Query 854 CTGATGTATTGAAGCCGCAACATCAAGTAAAAGAAGAACCAGATACTAGTGCAGAAAAGT 913
||||||||||||||||||| |||||||| || |||||||| || ||| | | |||||
Sbjct 538 CTGATGTATTGAAGCCGCAGCATCAAGT--AA-AAGAACCACTTATTAG-G--GCAAAGT 591
Query 914 CAATACCTGATTTATCAGCTCCACAGAAGAATCGGGCACCCAAAAAGAAGAGGAAAGTTG 973
||||||||||||||||||||||| ||||||| | |||| ||||||||||||| |||| ||
Sbjct 592 CAATACCTGATTTATCAGCTCCAAAGAAGAACCAGGCAGCCAAAAAGAAGAGAAAAGCTG 651
Query 974 TTGAAGAATCCTCTAAGAGTTTTGAGGTTGATAGCTCTGATACTGCTGGGGCTAAAACAG 1033
|||| ||||||||||| ||||||||||||||||| | | ||||||||||||||||||
Sbjct 652 TTGAGGAATCCTCTAAAAGTTTTGAGGTTGATAG--C---T-CTGCTGGGGCTAAAACAG 705
Query 1034 ATACAAATGAACATAATAAGAGGAAGTCATCAAGGAAAAAGCCACAGGTTTCTTACGCAA 1093
||||| ||||| ||||||||||||||||||| ||||||||||||||||||| || | |||
Sbjct 706 ATACACATGAATATAATAAGAGGAAGTCATCGAGGAAAAAGCCACAGGTTTTTTGCACAA 765
Query 1094 AGGAG-GGAAGCGATGGTGATTTTGTCAGCCCTCCAAATAAAAAGACAAAATCAGGTTTT 1152
||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 766 AGG-GTGGAAGAGATGGTGATTTTGTCAGCCCTCCAAATAAAAAGACAAAATCAGGTTGT 824
Query 1153 GAATTTGAGTCTGAGCCTAATAAGAAGCAAACGGCTGAGGATAATAAGTCACCTAAACTG 1212
||||| ||||||||| | ||| |||||||||||||||||||||| ||| | | |
Sbjct 825 GAATTCGAGTCTGAGTTTGATACGAAGCAAACGGCTGAGGATAATCAGT---C---A-T- 876
Query 1213 GCTGTTTCTGGTGTTTCTTCTGCTTCTTCACATTCTTATAAAGGAAAGGCCAAGAAAAAT 1272
||| || | | ||| ||| | | |||||||||||||||||||||||||
Sbjct 877 -CTG-AACT-G-G------CTGATTC-T--C---CTTATAAAGGAAAGGCCAAGAAAAAC 920
Query 1273 GCGCATTCTGGAAATGAAGACAA-CTTGTCA-GCCAAAAACAAAGTTAGTGAAGGCTGTG 1330
| |||||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||
Sbjct 921 GTGCATTCTGGAAATGAAGA-AATCTTGTCATG-CAAAAACAAAGTTTGTGAAGGCTGTG 978
Query 1331 ATGGTAATGGAGAAGATGCAGCCTTGTTGAGCAAGATTGGTAGAGTTGAAAAAGGATACA 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATGGTAATGGAGAAGATGCAGCCTTGTTGAGCAAGATTGGTAGAGTTGAAAAAGGATACA 1038
Query 1391 AAGCTAATGAAAATTCTAATCCGCTTGATATACCTGATTTAGAGTTCAGTGTGTTTAAAG 1450
||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1039 AAGTTAATGAAAATCCTAATCCGCTTGATATACCTGATCCAGAGTTCAGTGCGTTTAAAG 1098
Query 1451 TTGAACGGAAA-ACAGAAGATTTTGCTGTCAATCAAGTGTGGTCTACTACAACTGATTGT 1509
||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1099 TTGAACG-AAATACAGGAGATTTTGCTGTCAATCAAGTGTGGTCTACTACAACTGATTCT 1157
Query 1510 AGAGATGGTATGCCTAGGAAATATGCTCGGGTAAAGAAAGTACTGAATGGCGAGTTCAAG 1569
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1158 AGAGATGGTATGCCTCGGAAATATGCTCGGGTAAAGAAAGTGCTGAATGGCGAGTTCAAG 1217
Query 1570 CTGCGGATCACCTACCTTGATCCTGTACTGGATAAGACTGATGAAAGTATTCCAGTTGCT 1629
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1218 CTGTGGATTACCTACCTTGATCCTGTACTGGATAAGAATGATGAAAGTATTCCAGTTGCT 1277
Query 1630 TGTGGAAAGTTCAAAAATGGGAAAACA-ATGGAAGTTAAAGACAGCT-CAATCTTTTCAG 1687
||||||||||||||||||||||||||| | ||||||| | ||| ||| || |||||||||
Sbjct 1278 TGTGGAAAGTTCAAAAATGGGAAAACAGA-GGAAGTTGAGGACCGCTTCA-TCTTTTCAG 1335
Query 1688 GTCAAATGCATCACTTG-CGTTGCAACAATATTGTTTCCATCTACCCAAGGAAAGGGGAA 1746
|||||||||||||||| | ||||||||| | ||||||||| || ||||||||||||||
Sbjct 1336 TTCAAATGCATCACTTGTC-TTGCAACAAAACTGTTTCCATATATCCAAGGAAAGGGGAG 1394
Query 1747 ATATGGGCTATATTCAGAGAGTGGGAGGAGGAATGGAACACTAGTCTAAAAAAGCATAAA 1806
||||||||||| |||||||| ||||| | ||||||||||||||||||| |||||||||||
Sbjct 1395 ATATGGGCTATTTTCAGAGAATGGGATGCGGAATGGAACACTAGTCTAGAAAAGCATAAA 1454
Query 1807 TTTCCATATAAGTATGACTTTGTGGAAATTGTCAGTGATTTTCATGATCTTAACGGGGTT 1866
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1455 TTACCATATAAGTATGACTTTGTGGAAATTGTCAGTGATTTTCATGATCTTAAAGGTGTT 1514
Query 1867 GGAGTGGCCTATCTGGGAAAACTTAAAGGGTCTGTTCAGCTATTTCACTGGGAGCCGCAG 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GGAGTGGCCTATCTGGGAAAACTTAAAGGGTCTGTTCAGCTATTTCACTGGGAGCCGCAG 1574
Query 1927 CATGGAATTTGCCAGATTCAATGTAGTCCGAAAGATATGCTTAGATTTTCTCACAAAGTA 1986
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1575 AATGGAATTTGCCAGATTCAATTTACTCCGAAAGATATGCTTAGATTTTCTCACAAAGTA 1634
Query 1987 CCAGCAGTCAAAATGACTGGAAAAGAGAAAGAATCTGTTCCACCTAACTCATATGAATTG 2046
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1635 CCAGCAGTCAAAATGACTGGAAAAGAGAAAGAATGTGTTCCACCTAACTCATATGAACTG 1694
Query 2047 GATCCTGCTGCCTTACCAAAAGATATATTTCAGGTTGATGCGGTTGATATGGAGATGGAT 2106
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 GATCCTGCTGCATTACCTAAAGATATATTTCAGGTTGATGCGGTTGATATGGAGATGGAT 1754
Query 2107 AGTGAGATCCTGAAAGGTAAAGCTGACGGCCCT-T-----A---T---AAGGTTGGAGCG 2154
||||||||||||||||||||| ||||||||||| | | | ||||||||||||
Sbjct 1755 AGTGAGATCCTGAAAGGTAAACCTGACGGCCCTGTTCCCGAAGCTTCCAAGGTTGGAGCG 1814
Query 2155 AAGGCCAAGGCAGTTCAAGAGACCGCATCATCTCCAAGGAAACGTCAGAAA-TCTGATGA 2213
||||||||| |||||| |||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 1815 AAGGCCAAGCCAGTTCCAGAGACCGCACCATCTCCAAGGAAACGTC-GAAAATCTGATGA 1873
Query 2214 TGATAATGATGATGGTGTATGCAGTAATCTTGGGGAAGTCATAGGCGGAA-GCAACAGAA 2272
||| | || | | |||||||||||| |||||||||||||||| |||| | |||||||
Sbjct 1874 TGACA-TG--G--GC-GTATGCAGTAATGTTGGGGAAGTCATAGGTGGAACG-AACAGAA 1926
Query 2273 GTCATATTTTTTCTTCTTGTGAAGTTGATGATAA---GAACACATCAACCAAATCCAGAA 2329
| ||||||| ||||||||||||||||||||| || ||||||| ||| ||| ||||||
Sbjct 1927 GCCATATTTATTCTTCTTGTGAAGTTGATGAAAAAAAGAACACACCAAACAAGTCCAGAG 1986
Query 2330 AGGATGGTGAGTCCACAGATGTTTTCAGACTTCGAAAATCTCCTCGTCTTCAAACAATTC 2389
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1987 AGGATGGTGAGGCCACAGATGTTTTCAAACTTGGAAAATCTCCTCGTCTTCAAACAATTC 2046
Query 2390 CAAACCACCAAGGAGATGAGAAGAAAAGTGCTAAACAAGGCAACAAGATGAATACCCCAA 2449
||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2047 CAAGCCAACAAGAAGATGAGAAGAAAAGAGCTAAACAAGGTAACAAGATGAATACCCCAA 2106
Query 2450 AGAAAAT 2456
|||||||
Sbjct 2107 AGAAAAT 2113
Score = 185 bits (100), Expect = 2e-45
Identities = 137/154 (89%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 2495 AAAAGAAAACATC--A-AAGTCCAGAAAGAATGGTGAGGCCACAGATGTATTCAAACTTC 2551
||||||| ||| | | ||||||||| || ||||||||||||||||||| |||||||||
Sbjct 1960 AAAAGAACACACCAAACAAGTCCAGAGAGGATGGTGAGGCCACAGATGTTTTCAAACTTG 2019
Query 2552 GAAAATCTCCTCGTCTTCAAACAATTCCAAGCCAACAAGGAGATGAGATGAAAAGTA-CT 2610
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct 2020 GAAAATCTCCTCGTCTTCAAACAATTCCAAGCCAACAAGAAGATGAGAAGAAAAG-AGCT 2078
Query 2611 AAACAAGGCAATAAAATGAATACCCCGAAGAAAA 2644
|||||||| || || ||||||||||| |||||||
Sbjct 2079 AAACAAGGTAACAAGATGAATACCCCAAAGAAAA 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132097835883
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5