BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04990.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952005 jgi|Araly1|952005|scaffold_29400001.1 920 0.0
Ahg340662 jgi|Araly1|340662|fgenesh1_pg.C_scaffold_3000425 701 0.0
> Ahg952005 jgi|Araly1|952005|scaffold_29400001.1
Length=802
Score = 920 bits (498), Expect = 0.0
Identities = 620/678 (91%), Gaps = 12/678 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAACTCAAAGCTGATGCTGCCGAAATAATGATCTGCG-CCGGTCAACTGAAAGG 59
|||||||||||||||||||||||| |||||||||| |||| || || ||||| |||||||
Sbjct 24 ATGGAGAAACTCAAAGCTGATGCTTCCGAAATAATCATCTACGTCC-GTCAATTGAAAGG 82
Query 60 TTTACTCAACCAT-TTGCGCATGGGTGAAGCCAACATTGAGAAGAGCTCTCGAGAGCTAG 118
||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||| |
Sbjct 83 TTTACTCAACCATATTG-GCATGGCTGAAGCGAACATTGAGAAGAGGTCTCGAGAGCTGG 141
Query 119 ATTTAAAGGAGAAGGAGCTGCAAATTTTGAGCTCAGACCTTGAGCAAAAGAGTCATGCTT 178
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 142 ATTTAAAGGAGGAGGAGCTGCAAATTTTGAGCTCAGACCTTGAGCAAAAGAGTCAAACTT 201
Query 179 TTGAAGCAGAGAAA-TCTGAAGTTGGTGATTTGAAGAAATTGGTGGAAGAGTGTACTGAA 237
|||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 202 TTGAAGCAGA-AAAGTCTGAAGCTGGTGATTTGAAGAAATTGGTGGAAGAGTGTACTGAA 260
Query 238 GAACTGAGGTCAAAGAGGAATCTACTGACTGTGAAGCTGGATTCGTTGATAAGGGTTCAG 297
|||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||
Sbjct 261 GAACTGAGGTCAAAGAGGAATCTACTGACTGTGAGGCTCGATTCTTTGACAAGGGTTCAG 320
Query 298 AGAGAGCTTGAGTTAAAGGATAACCAATTGGTACAGGTTATGGCTGAGCTTAAGAGGCGT 357
||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 321 AGAGAGCTTGAGTCAAAGGATAACCAATTGGGACAGGTTATGGCCGAGATTAAGAGGCGT 380
Query 358 TACAGTGAGGCTCGTCATGTTCAAAAGCGTAAGAGAGAAATGGAAGATGAAACAGCTACA 417
| || |||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 381 TGCACTGAGGCTCGTAATGTTCAAGAGCGTAAGAGAGAAGTGGAAGATGAAACAGCTTCA 440
Query 418 AAAAAGAAAGAGTTGTCTA-TGACTGTTGACCAGATTC-AAGAATCTGGCAAACAGCTTG 475
|| |||||||||||||| | ||| |||||| ||||| | ||||||||| |||||||||||
Sbjct 441 AAGAAGAAAGAGTTGTC-ACTGATTGTTGAGCAGAT-CGAAGAATCTGACAAACAGCTTG 498
Query 476 AGAAGAAGTCTCGGGAGGTAGAGTTGAAGGATAAAGAGATTGAAGAGAA-AGGAAAAGAA 534
|||| |||||||| || ||||| |||||||| || || ||||||||||| || |||||||
Sbjct 499 AGAACAAGTCTCGAGAAGTAGAATTGAAGGAGAAGGACATTGAAGAGAACAG-AAAAGAA 557
Query 535 CTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGGAAACTCATTCAGCTGAGTAAA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 558 CTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGGAAACTCATTCAGCTTAGGAAA 617
Query 595 TTGGTTGATGATGATTGTACTACAGAACTAAGTCCGAGGAAAGATCAAGTGGATTCATCG 654
|||||||||||||||||||| | ||||||| |||| ||||||||||| | ||||||||||
Sbjct 618 TTGGTTGATGATGATTGTACAAGAGAACTACGTCCAAGGAAAGATCATGAGGATTCATCG 677
Query 655 AACAACACTTATGTGAAA 672
||||||||| ||||||||
Sbjct 678 AACAACACTCATGTGAAA 695
> Ahg340662 jgi|Araly1|340662|fgenesh1_pg.C_scaffold_3000425
Length=684
Score = 701 bits (379), Expect = 0.0
Identities = 471/515 (91%), Gaps = 8/515 (2%)
Strand=Plus/Plus
Query 158 TTGAGCAAAAGAGTCATGCTTTTGAAGCAGAGAAA-TCTGAAGTTGGTGATTTGAAGAAA 216
|||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 11 TTGAGCAAAAGAGTCAAACTTTTGAAGCAGA-AAAGTCTGAAGCTGGTGATTTGAAGAAA 69
Query 217 TTGGTGGAAGAGTGTACTGAAGAACTGAGGTCAAAGAGGAATCTACTGACTGTGAAGCTG 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 70 TTGGTGGAAGAGTGTACTGAAGAACTGAGGTCAAAGAGGAATCTACTGACTGTGAGGCTC 129
Query 277 GATTCGTTGATAAGGGTTCAGAGAGAGCTTGAGTTAAAGGATAACCAATTGGTACAGGTT 336
||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 130 GATTCTTTGACAAGGGTTCAGAGAGAGCTTGAGTCAAAGGATAACCAATTGGGACAGGTT 189
Query 337 ATGGCTGAGCTTAAGAGGCGTTACAGTGAGGCTCGTCATGTTCAAAAGCGTAAGAGAGAA 396
||||| ||| |||||||||||| || |||||||||| |||||||| ||||||||||||||
Sbjct 190 ATGGCCGAGATTAAGAGGCGTTGCACTGAGGCTCGTAATGTTCAAGAGCGTAAGAGAGAA 249
Query 397 ATGGAAGATGAAACAGCTACAAAAAAGAAAGAGTTGTCTA-TGACTGTTGACCAGATTC- 454
||||||||||||||||| |||| |||||||||||||| | ||| |||||| ||||| |
Sbjct 250 GTGGAAGATGAAACAGCTTCAAAGAAGAAAGAGTTGTC-ACTGATTGTTGAGCAGAT-CG 307
Query 455 AAGAATCTGGCAAACAGCTTGAGAAGAAGTCTCGGGAGGTAGAGTTGAAGGATAAAGAGA 514
||||||||| ||||||||||||||| |||||||| || ||||| |||||||| || || |
Sbjct 308 AAGAATCTGACAAACAGCTTGAGAACAAGTCTCGAGAAGTAGAATTGAAGGAGAAGGACA 367
Query 515 TTGAAGAGAA-AGGAAAAGAACTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGG 573
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TTGAAGAGAACAG-AAAAGAACTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGG 426
Query 574 AAACTCATTCAGCTGAGTAAATTGGTTGATGATGATTGTACTACAGAACTAAGTCCGAGG 633
|||||||||||||| || ||||||||||||||||||||| | | |||||||||||| |||
Sbjct 427 AAACTCATTCAGCTTAGGAAATTGGTTGATGATGATTGTGCAAGAGAACTAAGTCCAAGG 486
Query 634 AAAGATCAAGTGGATTCATCGAACAACACTTATGT 668
|||||||| ||||||||||||||||||||| ||||
Sbjct 487 AAAGATCATGTGGATTCATCGAACAACACTCATGT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5