BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04990.1 Length=684 Score E Sequences producing significant alignments: (Bits) Value Ahg952005 jgi|Araly1|952005|scaffold_29400001.1 920 0.0 Ahg340662 jgi|Araly1|340662|fgenesh1_pg.C_scaffold_3000425 701 0.0 > Ahg952005 jgi|Araly1|952005|scaffold_29400001.1 Length=802 Score = 920 bits (498), Expect = 0.0 Identities = 620/678 (91%), Gaps = 12/678 (2%) Strand=Plus/Plus Query 1 ATGGAGAAACTCAAAGCTGATGCTGCCGAAATAATGATCTGCG-CCGGTCAACTGAAAGG 59 |||||||||||||||||||||||| |||||||||| |||| || || ||||| ||||||| Sbjct 24 ATGGAGAAACTCAAAGCTGATGCTTCCGAAATAATCATCTACGTCC-GTCAATTGAAAGG 82 Query 60 TTTACTCAACCAT-TTGCGCATGGGTGAAGCCAACATTGAGAAGAGCTCTCGAGAGCTAG 118 ||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||| | Sbjct 83 TTTACTCAACCATATTG-GCATGGCTGAAGCGAACATTGAGAAGAGGTCTCGAGAGCTGG 141 Query 119 ATTTAAAGGAGAAGGAGCTGCAAATTTTGAGCTCAGACCTTGAGCAAAAGAGTCATGCTT 178 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 142 ATTTAAAGGAGGAGGAGCTGCAAATTTTGAGCTCAGACCTTGAGCAAAAGAGTCAAACTT 201 Query 179 TTGAAGCAGAGAAA-TCTGAAGTTGGTGATTTGAAGAAATTGGTGGAAGAGTGTACTGAA 237 |||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 202 TTGAAGCAGA-AAAGTCTGAAGCTGGTGATTTGAAGAAATTGGTGGAAGAGTGTACTGAA 260 Query 238 GAACTGAGGTCAAAGAGGAATCTACTGACTGTGAAGCTGGATTCGTTGATAAGGGTTCAG 297 |||||||||||||||||||||||||||||||||| ||| ||||| |||| |||||||||| Sbjct 261 GAACTGAGGTCAAAGAGGAATCTACTGACTGTGAGGCTCGATTCTTTGACAAGGGTTCAG 320 Query 298 AGAGAGCTTGAGTTAAAGGATAACCAATTGGTACAGGTTATGGCTGAGCTTAAGAGGCGT 357 ||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| Sbjct 321 AGAGAGCTTGAGTCAAAGGATAACCAATTGGGACAGGTTATGGCCGAGATTAAGAGGCGT 380 Query 358 TACAGTGAGGCTCGTCATGTTCAAAAGCGTAAGAGAGAAATGGAAGATGAAACAGCTACA 417 | || |||||||||| |||||||| |||||||||||||| ||||||||||||||||| || Sbjct 381 TGCACTGAGGCTCGTAATGTTCAAGAGCGTAAGAGAGAAGTGGAAGATGAAACAGCTTCA 440 Query 418 AAAAAGAAAGAGTTGTCTA-TGACTGTTGACCAGATTC-AAGAATCTGGCAAACAGCTTG 475 || |||||||||||||| | ||| |||||| ||||| | ||||||||| ||||||||||| Sbjct 441 AAGAAGAAAGAGTTGTC-ACTGATTGTTGAGCAGAT-CGAAGAATCTGACAAACAGCTTG 498 Query 476 AGAAGAAGTCTCGGGAGGTAGAGTTGAAGGATAAAGAGATTGAAGAGAA-AGGAAAAGAA 534 |||| |||||||| || ||||| |||||||| || || ||||||||||| || ||||||| Sbjct 499 AGAACAAGTCTCGAGAAGTAGAATTGAAGGAGAAGGACATTGAAGAGAACAG-AAAAGAA 557 Query 535 CTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGGAAACTCATTCAGCTGAGTAAA 594 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 558 CTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGGAAACTCATTCAGCTTAGGAAA 617 Query 595 TTGGTTGATGATGATTGTACTACAGAACTAAGTCCGAGGAAAGATCAAGTGGATTCATCG 654 |||||||||||||||||||| | ||||||| |||| ||||||||||| | |||||||||| Sbjct 618 TTGGTTGATGATGATTGTACAAGAGAACTACGTCCAAGGAAAGATCATGAGGATTCATCG 677 Query 655 AACAACACTTATGTGAAA 672 ||||||||| |||||||| Sbjct 678 AACAACACTCATGTGAAA 695 > Ahg340662 jgi|Araly1|340662|fgenesh1_pg.C_scaffold_3000425 Length=684 Score = 701 bits (379), Expect = 0.0 Identities = 471/515 (91%), Gaps = 8/515 (2%) Strand=Plus/Plus Query 158 TTGAGCAAAAGAGTCATGCTTTTGAAGCAGAGAAA-TCTGAAGTTGGTGATTTGAAGAAA 216 |||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||| Sbjct 11 TTGAGCAAAAGAGTCAAACTTTTGAAGCAGA-AAAGTCTGAAGCTGGTGATTTGAAGAAA 69 Query 217 TTGGTGGAAGAGTGTACTGAAGAACTGAGGTCAAAGAGGAATCTACTGACTGTGAAGCTG 276 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 70 TTGGTGGAAGAGTGTACTGAAGAACTGAGGTCAAAGAGGAATCTACTGACTGTGAGGCTC 129 Query 277 GATTCGTTGATAAGGGTTCAGAGAGAGCTTGAGTTAAAGGATAACCAATTGGTACAGGTT 336 ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 130 GATTCTTTGACAAGGGTTCAGAGAGAGCTTGAGTCAAAGGATAACCAATTGGGACAGGTT 189 Query 337 ATGGCTGAGCTTAAGAGGCGTTACAGTGAGGCTCGTCATGTTCAAAAGCGTAAGAGAGAA 396 ||||| ||| |||||||||||| || |||||||||| |||||||| |||||||||||||| Sbjct 190 ATGGCCGAGATTAAGAGGCGTTGCACTGAGGCTCGTAATGTTCAAGAGCGTAAGAGAGAA 249 Query 397 ATGGAAGATGAAACAGCTACAAAAAAGAAAGAGTTGTCTA-TGACTGTTGACCAGATTC- 454 ||||||||||||||||| |||| |||||||||||||| | ||| |||||| ||||| | Sbjct 250 GTGGAAGATGAAACAGCTTCAAAGAAGAAAGAGTTGTC-ACTGATTGTTGAGCAGAT-CG 307 Query 455 AAGAATCTGGCAAACAGCTTGAGAAGAAGTCTCGGGAGGTAGAGTTGAAGGATAAAGAGA 514 ||||||||| ||||||||||||||| |||||||| || ||||| |||||||| || || | Sbjct 308 AAGAATCTGACAAACAGCTTGAGAACAAGTCTCGAGAAGTAGAATTGAAGGAGAAGGACA 367 Query 515 TTGAAGAGAA-AGGAAAAGAACTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGG 573 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 TTGAAGAGAACAG-AAAAGAACTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGG 426 Query 574 AAACTCATTCAGCTGAGTAAATTGGTTGATGATGATTGTACTACAGAACTAAGTCCGAGG 633 |||||||||||||| || ||||||||||||||||||||| | | |||||||||||| ||| Sbjct 427 AAACTCATTCAGCTTAGGAAATTGGTTGATGATGATTGTGCAAGAGAACTAAGTCCAAGG 486 Query 634 AAAGATCAAGTGGATTCATCGAACAACACTTATGT 668 |||||||| ||||||||||||||||||||| |||| Sbjct 487 AAAGATCATGTGGATTCATCGAACAACACTCATGT 521 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25123002303 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5