BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05000.1

Length=850
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903335 jgi|Araly1|903335|Al_scaffold_0003_463                     767    0.0  


> Ahg903335 jgi|Araly1|903335|Al_scaffold_0003_463
Length=468

 Score =  767 bits (415),  Expect = 0.0
 Identities = 443/457 (97%), Gaps = 0/457 (0%)
 Strand=Plus/Plus

Query  125  TGGCCGATTCTATGCTAACAAGCCGGAACTCGCCGCTCGGAGGATCGAGGCCATTGGTTA  184
            ||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  12   TGGTCGATTCTACGCTAATAAGCCGGAACTCGCCGCTCGGAGGATCGAGGCCATTGGTTA  71

Query  185  TCAGGTCGGCCACCAGCTCTCCGAGAGGTACACTATGGAAAGACCAAGGTTCAGTGACCA  244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  72   TCAGGTCGGCCACCAGCTCTCCGAGAGGTACACTATGGAAAGACCAAGGTTCAGTGACCA  131

Query  245  TCTAGAGGCAATCAAGTTTATCTGCAAAGACTTCTGGTCTGAGGTCTTCAAGAAGCAGAT  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  TCTAGAGGCAATCAAGTTTATCTGCAAAGACTTCTGGTCTGAGGTCTTCAAGAAGCAGAT  191

Query  305  TGATAATTTAAAGACAAATCACCGGGGTACTTTTGTATTACAAGACAACAAGTTCCGGTG  364
             ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  192  AGATAACTTAAAGACAAATCACCGGGGTACTTTTGTATTGCAAGACAACAAGTTCCGGTG  251

Query  365  GTTGTCTCGTGTCTCAATTGACCCTTCATCTGAGAATGAAACCCAAGATCCTTCTACTCC  424
            |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct  252  GTTGTCTCGTGTCTCAATTGACCCTTCATCTGAGAACGAAACCGAAGATCCATCTACTCC  311

Query  425  AGGGGAAAGCAAAGCTGCACAAGCGGTGAGCATGTACCTCTATTTCCCGTGTGGAATCAT  484
            ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  312  AGGGGAAAGCAAAGCAGCACAAGCGGTGAGCATGTACCTCTATTTCCCATGTGGAATCAT  371

Query  485  TAGAGGTGTCCTCTCCAACTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCT  544
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  372  AAGAGGTGTCCTCTCCAACTTGGGGATACCGTGTGCTGTCTCTGCAGATATATCAAGCCT  431

Query  545  TCCCACATGCTCTTTCGTGATTCGGGTCAAGGCTTGA  581
            ||||||||||||||||||||||||||| |||||||||
Sbjct  432  TCCCACATGCTCTTTCGTGATTCGGGTAAAGGCTTGA  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31451406525


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5