BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05010.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903337 jgi|Araly1|903337|Al_scaffold_0003_465 1051 0.0
Ahg489607 jgi|Araly1|489607|fgenesh2_kg.6__2741__AT5G27210.1 802 0.0
> Ahg903337 jgi|Araly1|903337|Al_scaffold_0003_465
Length=936
Score = 1051 bits (569), Expect = 0.0
Identities = 616/639 (96%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 155 ATGCGAGTGCTCAGCGAGATTGCGGAGTCACCGTTCGT-GATTTCTCGGCTAAGCCCTGA 213
|||||||| ||| ||||||||||||||||||| ||| | |||||||||||| |||||| |
Sbjct 1 ATGCGAGTTCTCGGCGAGATTGCGGAGTCACCTTTC-TCGATTTCTCGGCTGAGCCCTAA 59
Query 214 TTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGGAAGTGTCATGGGTTTCTTCA 273
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 60 TTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGAAAGTGTCATGGGTTTCTGCA 119
Query 274 TAACACGGTTTTGGTTTTAGCATCTATTCTATTCGTCGCTTACTTAGCGTACGAGGCGAA 333
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TAACACGGTTTTGGTTTTAGCATCTATTCTATTCGTCGCTTACTTAGCCTACGAGGCGAA 179
Query 334 GAAGAGCTTGTCCAAGTTGTCTAATCGGAGATCTTACATTATGATTGCCTATTATGGTTT 393
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 180 GAAGAGCTTGTCCAAGTTGTCGAATCGGAGATCTTATATTATGATCGCCTATTATGGTTT 239
Query 394 TCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGGCATGGGAATGCAC 453
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGTCTTCAGGCATGGGAATGCAC 299
Query 454 TCCGGGGAAAGAAGTTATTTGGAATTTGTTAACTTTGTTCACAACATCTGGAATGTTGTT 513
||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 300 TCCTGGGAAAGAAGTTATTTGGAATCTATTAACTTTGTTCACAACATCTGGAATGTTGTT 359
Query 514 TCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCTGAAGC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCTGAAGC 419
Query 574 ATTAACACGAACTTTCCTCATCTCGGGGCTTGTCATTGGTCTCGATTTGCTTCTCAAGGC 633
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 420 ATTAACACGAACTTTCCTCATCTCGGGGCTTGTTATAGGTCTCGATTTGCTTCTCAAGGC 479
Query 634 AATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAATGAACATATACATAA 693
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 AATTTATCTCTTTGGATTTGGAGTACCATTGTTTATCGACAACAATGAACATATACAAAA 539
Query 694 GTTCAAATGGGGCTTATGGGTCATCCACAAGCTCTTACTAGCTGGCATTTATGGGATGAT 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GTTCAAATGGGGCTTATGGGTCATCCACAAGCTCTTACTAGCTGGCATTTATGGTATGAT 599
Query 754 ATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACC 792
|||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACC 638
Score = 460 bits (249), Expect = 8e-129
Identities = 259/264 (98%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 794 GCAAGACCTGCATTCTACAAGTATATAACTGTCATGCTCGCCTTAAATGGGCTCTCCCTA 853
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 673 GCAAGACCTGCATTCTACAAGTACATAACTGTCATGCTCGCCTTAAATGGGCTCTCCCTA 732
Query 854 TTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATGGTTGTATGGGATCACA 913
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 733 TTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATGGTTGTATGGGGTCACA 792
Query 914 AGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTT 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTT 852
Query 974 TTCCAGGAGGAAGATCTGAATTTGGAGAATGTCTACTATTCAGAAATGAAAGATGCTGGA 1033
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 853 TTCCAGGAGGAAGATCTGAACTTGGAGAATGTCTACTATTCAGAGATGAAAGATGCTGGA 912
Query 1034 TTCTTCGACGCTGATTGGGAATAA 1057
||||||||||| ||||||||||||
Sbjct 913 TTCTTCGACGCCGATTGGGAATAA 936
> Ahg489607 jgi|Araly1|489607|fgenesh2_kg.6__2741__AT5G27210.1
Length=1112
Score = 802 bits (434), Expect = 0.0
Identities = 767/924 (83%), Gaps = 37/924 (4%)
Strand=Plus/Plus
Query 147 TTGATGAAATGCGAGTGC-TCAGCGAGATTGCGGAGTCACC-GTTCGTGATTTCTCGGCT 204
|||||||||||||||| | | || || ||||| ||||| || ||| ||||||| | |||
Sbjct 7 TTGATGAAATGCGAGTTCTTGAG-GAAATTGCAGAGTCCCCTTTTC-TGATTTCACAGCT 64
Query 205 AAGCCCTGATTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGGAAGTGTCATGG 264
|| |||| |||| || |||| | || ||| |||||||| ||||| ||| |
Sbjct 65 AAACCCTAATTCAACAGCCA----ATGG-ATAT----AAATGGGTCGATAAGTGCCAT-G 114
Query 265 GTTTCTT-CATAACACGGTT-TTGGTTTTAGCATCTATTCTATTCGTCGCTTACTTAGCG 322
| ||||| || ||||||||| || ||| || ||| || | || ||||||||||||||
Sbjct 115 GATTCTTACACAACACGGTTCTT-GTTGCGGCTTCTCTTTTCTTTGTCGCTTACTTAGCT 173
Query 323 TACGAGGCGAAGAAGAGCTTGTCCAAGTTGTCTAATCGGAGATCTTACATTATGATTGCC 382
||||| ||||||||||| ||||| || | || |||||||||||||| || ||||| ||
Sbjct 174 TACGAAGCGAAGAAGAGTTTGTCTAAACTCTCGAATCGGAGATCTTATATCATGATCGCT 233
Query 383 TATTATGGTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGGCA 442
|||||||| | |||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 234 TATTATGGGTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGT 293
Query 443 TGGGAATGCACTCCGGGGAAAGAAGTTATTTGGAATTTGTTAACTTTGTTCACAACATCT 502
|||||||| ||||| |||||| ||||| |||||||| ||||||||||||| |||||||||
Sbjct 294 TGGGAATGTACTCCTGGGAAACAAGTTGTTTGGAATCTGTTAACTTTGTTTACAACATCT 353
Query 503 GGAATGTTGTTTCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGC 562
||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 354 GGAATGTTGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGGAACTATGCAAGT 413
Query 563 GGTGCTGAAGCATTAAC-ACGAACTTTCCTCATCTCGGGGCTTGTCATTG-GTCTC--GA 618
||||| ||||||||||| | |||||||||| |||||||| || | |||| | ||| ||
Sbjct 414 GGTGCAGAAGCATTAACTA-GAACTTTCCTAATCTCGGGT-TT-T-ATTGTGGCTCTTGA 469
Query 619 TTTGCTTCTCAAGGCAATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAA 678
|||||||||||||||||||| ||||||||| ||||| || ||||||||||| ||||||||
Sbjct 470 TTTGCTTCTCAAGGCAATTTTTCTGTTTGGATTTGGCGTGCCATTGTTTATTGACAACAA 529
Query 679 TGAACATATACATAA-GTTCAAATGGGGCTTATGGGTCATCCACAAGCT-CTTACT-AGC 735
|||| || | | || |||||||||||| |||||| |||| || ||||| || ||| | |
Sbjct 530 TGAAAATGGAAA-AACGTTCAAATGGGGATTATGGATCATTCATAAGCTTCT-ACTCA-C 586
Query 736 TGGCATTTATGGGATGATATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACCAGC 795
|||| ||||||||||| ||||||| ||||||||||| | |||||||| | |||||| ||
Sbjct 587 TGGCGTTTATGGGATGGTATTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTACCTGC 646
Query 796 AAGACCTGCATTCTACAAGTATATAA-CTGTCATGCTCGCCTTAAATGGGCTCTCCCTAT 854
||| |||||||||||||| || |||| | ||||| |||||||| | | || | ||||
Sbjct 647 AAGGCCTGCATTCTACAACTACATAATCA-TCATGTTCGCCTTATACAGCCTTTACCTAG 705
Query 855 TTGCATGTGC-TCTTACGGCAAACGGTGCTCATTTTGGATTATGGTTGTATGGGATCACA 913
|||||| ||| | |||| |||||| | | ||||||||||| ||||||||||||||||
Sbjct 706 TTGCATCTGCGT-TTACCGCAAACAGCACGCATTTTGGATTCTGGTTGTATGGGATCATG 764
Query 914 AGTGTTTGTTACCACGCCTTCTATCTTCCTCTT-TTGTATGTTACTTTTCTTGCAGACTT 972
|||||||| |||||||| || || ||||||||| || || |||||||| || ||||||||
Sbjct 765 AGTGTTTGCTACCACGCGTTATACCTTCCTCTTCTT-TACGTTACTTTCCTCGCAGACTT 823
Query 973 TTTCCAGGAGGAAGATCTGAATTTGGAGAATGTCTACTATTCAGAAATGAAAGATGCTGG 1032
||||||||| ||||||||||| ||||||||||| ||||| ||||| |||| |||||||||
Sbjct 824 TTTCCAGGAAGAAGATCTGAACTTGGAGAATGTATACTACTCAGAGATGAGAGATGCTGG 883
Query 1033 ATTCTTCGACGCTGATTGGGAATA 1056
||| |||||| |||||||||||||
Sbjct 884 ATTTTTCGACTCTGATTGGGAATA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5