BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05020.1

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477783 jgi|Araly1|477783|fgenesh2_kg.3__484__AT3G05020.1          767    0.0  


> Ahg477783 jgi|Araly1|477783|fgenesh2_kg.3__484__AT3G05020.1
Length=667

 Score =  767 bits (415),  Expect = 0.0
 Identities = 474/501 (95%), Gaps = 9/501 (2%)
 Strand=Plus/Plus

Query  1    ACGCTCTTTGTACACTCCGCCctctctccccatctctttcgacaga----tctct-tctc  55
            ||||||||||||||||||||| ||||||||||||||||||||||||    ||||| ||||
Sbjct  1    ACGCTCTTTGTACACTCCGCCATCTCTCCCCATCTCTTTCGACAGATCTCTCTCTCTCTC  60

Query  56   --tctctcGTGTTTCACGAAACAATGGCGACTCAATTCAGCGCTTCTGTCT-CATTGCAA  112
              ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  61   TTTCTCTCGTGTTTCACGAAACAATGGCGACTCAATTCAGCGCTTCTGTCTCCA-TGCAA  119

Query  113  ACTTCTTGTCTGGCAACAACAAGGATTAGTTTCCAAAAGCCAGCTTTGATTTCCAACCAT  172
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  120  ACTTCTTGTCTGGCAACGACAAGGATTAGTTTCCAAAAGCCAGCATTGATTTCCAACCAT  179

Query  173  GGAAAGACTAATCTATCCTTCAACCTCCGCCGTTCAATCCCATCTCGCCGCCTCTCTGTT  232
            |||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  180  GGAAGGACTAATCTCTCCTTCAACCTGCGCCGTTCTATCCCATCTCGCCGCCTCTCTGTT  239

Query  233  TCTTGCGCGGCAAAACAAGAGACGATAGAGAAAGTGTCTGCTATAGTTAAGAAGCAACTA  292
            ||||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||||||
Sbjct  240  TCTTGCGCGGCAAAACAAGAGACGATAGAAAAAGTGTCTGAGATAGTGAAGAAGCAACTA  299

Query  293  TCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGAT  352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGAT  359

Query  353  TCTCTCGACACGGTTGAGATAGTAATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCC  412
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  360  TCTCTTGACACGGTTGAGATAGTGATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCT  419

Query  413  GAAGAGAAAGCACAGAAGATTGCCACAGTTGAGCAAGCTGCTGAACTCATTGAAGAGCTC  472
            ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  420  GAAGAGAAAGCTCAGAAGATTGCCACAGTGGAGCAAGCTGCTGAACTCATCGAAGAGCTC  479

Query  473  ATCAACGAGAAGAAGTAATTT  493
            ||||| |||||||||||||||
Sbjct  480  ATCAAGGAGAAGAAGTAATTT  500


 Score =  189 bits (102),  Expect = 2e-47
 Identities = 157/180 (87%), Gaps = 17/180 (9%)
 Strand=Plus/Plus

Query  543  aaaaaaaaaCAGGGCGTTGAGTTTGTTTTCATTATGTTTGATTTCTCTGTCATTTTCTTT  602
            |||||||||||||||||||||||||||||||||||||||||    ||  ||    | |||
Sbjct  501  AAAAAAAAACAGGGCGTTGAGTTTGTTTTCATTATGTTTGA----TC--TC----T-TTT  549

Query  603  AATGTGTCTAGCGAGTCTGCCTTTGTCCCAATGGTTTAGTATCTGCAT---GTATCCACG  659
             |||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||
Sbjct  550  -ATGTGTCTAGCGAGTCTGTCTTTGTCCCAATGGTTTAGTATCTGCATTATGTATCCACG  608

Query  660  GATCTCTATTTGTCGAC-GAATGTTATTTACAATAAGTGTTTCTTATTTTCTTTCCAAGA  718
            ||| |||||||||| || |||| | ||||||||||| | |||||||||||||||||||||
Sbjct  609  GATTTCTATTTGTC-ACCGAATATCATTTACAATAAATCTTTCTTATTTTCTTTCCAAGA  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26533550232


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5