BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05030.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477785 jgi|Araly1|477785|fgenesh2_kg.3__486__AT3G05030.1 2630 0.0
Ahg942396 jgi|Araly1|942396|scaffold_602940.1 1524 0.0
> Ahg477785 jgi|Araly1|477785|fgenesh2_kg.3__486__AT3G05030.1
Length=1632
Score = 2630 bits (1424), Expect = 0.0
Identities = 1570/1640 (96%), Gaps = 11/1640 (1%)
Strand=Plus/Plus
Query 348 ATGACAATGTTCGCCTCTTTAACCTCTAAAATGCTATCGGT-GTCAACTTCTGATCACGC 406
||||||||||||||||||||||| ||||||||| |||| || |||||||||||| |||||
Sbjct 1 ATGACAATGTTCGCCTCTTTAACGTCTAAAATGTTATC-GTCGTCAACTTCTGACCACGC 59
Query 407 ATCTGTCGTTTCACTTAATCTCTTTGTTGCCCTTCTATGTGCTTGTATCGTCATTGGCCA 466
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 60 CTCTGTGGTTTCACTCAATCTCTTTGTTGCCCTTCTATGTGCTTGTATCGTGATTGGGCA 119
Query 467 TCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACTGCTTTATTGATTGGGCTTGG 526
|||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 120 TCTTCTGGAGGAGAATCGATGGATGAACGAATCTATCACAGCTTTATTGATTGGGCTTTG 179
Query 527 CACTGGTGTCGTCATATTGTTGATTAGTAGAGGGAAAAACTCACATCTCTTGGTCTTTAG 586
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 180 CACTGGTGTCGTCATTTTGTTGATTAGTAGAGGGAAAAACTCACATCTGTTGGTCTTCAG 239
Query 587 TGAAGATCTCTTCTTTATATATCTTTTGCCACCCATAATATTCAATGCAGGGTTTCAAGT 646
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CGAAGATCTTTTCTTTATATATCTTTTGCCACCCATAATATTCAATGCAGGATTTCAAGT 299
Query 647 AAAAAAGAAGCAGTTTTTCCGAAATTTTGTAACTATTATGGCTTTTGGCGCCATTGGGAC 706
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 300 AAAAAAGAAGCAATTTTTCCGAAATTTTGTAACTATCATGGCTTTTGGCGCCATCGGGAC 359
Query 707 CGTAGTTTCTTGCACCATAATATCTCTAGGTGCAATTCAGTTCTTTAAGAAATTAGACAT 766
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CGTAGTTTCTTGCACCATAATATCTCTCGGTGCAATTCAGTTCTTTAAGAAATTAGACAT 419
Query 767 TGGGACCTTTGACTTGGGCGATTTTCTTGCAATCGGCGCCATATTTGCTGCAACCGACTC 826
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGGACCTTTGACTTAGGCGATTTTCTTGCAATCGGCGCCATATTTGCTGCAACCGACTC 479
Query 827 TGTATGCACACTACAGGTTCTCAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATT 886
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGTATGCACCCTGCAGGTTCTCAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTCTT 539
Query 887 TGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAATGCTATTCAGAGTTT 946
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 540 TGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTCAGAGCTT 599
Query 947 TGACCTCACCCACCTTAACCATGAAGCAGCTTTTCAATTTCTTGGGAACtttttttATCT 1006
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 600 TGACCTCACCCACCTCAACCATGAAGCAGCTTTTCAATTTCTTGGGAACTTCTTCTATCT 659
Query 1007 GTTTCTCTTGAGCACCGGACTTGGTGTCGCAACTGGTCTGATAAGTGCTTATGTCATCAA 1066
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTTCTCTTGAGCACCGTACTTGGTGTCGCAACTGGTCTGATAAGTGCTTATGTCATCAA 719
Query 1067 GAAACTGTATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCCCTCATGATGCTTATGGC 1126
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGCTATATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCCCTCATGATGCTTATGGC 779
Query 1127 TTATCTTTCATATATGCTTGCTGAGCTATTCGCCTTGAGTGGTATCCTAACTGTATTTTT 1186
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 ATATCTTTCATACATGCTTGCTGAGCTATTCGCCTTGAGTGGTATTCTAACTGTATTTTT 839
Query 1187 CTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTCACCGAGAGCTCAAGAATTAC 1246
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTAACCGAGAGCTCAAGAATTAC 899
Query 1247 TACCAAGCATGCCTTTGCTACTTTGTCGTTTCTCGCTGAGACTTTTATTTTCCTCTACGT 1306
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 900 TACCAAGCATGCCTTTGCTACTTTGTCATTTCTTGCTGAAACTTTTATTTTCCTCTACGT 959
Query 1307 TGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGTGACAGCCCGGGGACATC 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGTGACAGCCCGGGGACATC 1019
Query 1367 AGTTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTGGAAGAGCAGCTTTTGTCTT 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGTTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTGGAAGAGCAGCTTTTGTCTT 1079
Query 1427 TCCTCTTTCCTTCTTATCAAACTTAGCCAAGAAGCATCAGAGCGAGAAAATCAGCATCAA 1486
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1080 TCCTCTTTCCTTCTTATCAAACTTAGCCAAGAAGAATCAGAGCGAGAAAATCAACATCAA 1139
Query 1487 GCAGCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAGGTGCTGTATCTATGGCTCTTGC 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCAGCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAGGTGCTGTATCTATGGCTCTTGC 1199
Query 1547 CTACAATAAGTTTACAAGATCAGGGCACACAGAATTGCGCGGGAATGCAATCATGATTAC 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTACAATAAGTTTACAAGATCAGGGCACACAGAATTGCGCGGGAATGCAATCATGATTAC 1259
Query 1607 CAGTACAATAACCGTCTGTCTTTTTAGCACCATGGTGTTTGGTATGCTAACCAAACCACT 1666
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1260 CAGTACTATAACCGTCTGTCTTTTTAGCACCATGGTGTTTGGTATGCTGACCAAACCGCT 1319
Query 1667 GATTAGATACCTAATGCCACACCAAAAAGCGACCACCAGTACCACGAGTATGTTATCGGA 1726
||| ||||||||||||||||| |||||||||||||| | | | ||||||||| ||
Sbjct 1320 GATAAGATACCTAATGCCACATCAAAAAGCGACCAC--G-A----G--TATGTTATCCGA 1370
Query 1727 CGATAGCACTCCGAAATCAATCCACATTCCGCTCCTCGATGGTGAACAGCTAGATTCATT 1786
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1371 CGATAACACTCCGAAATCAATCCACATTCCGCTCCTCGATGGCGAACAGCTAGATTCATT 1430
Query 1787 TGAGTTACCTGGGAGCCACCAGGACGTGCCACGACCAAACAGCCTTCGAGGTTTCCTCAT 1846
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1431 TGAGTTACCTGGGAGCCACCAGGACGTGCCACGACCAAATAGCCTTAGAGGTTTCCTCAT 1490
Query 1847 GCGCCCCACACGGACTGTCCACTATTACTGGAGACAGTTTGATGATGCCTTCATGCGTCC 1906
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1491 GCGCCCCACACGCACTGTCCACCATTACTGGAGACAGTTTGATGATGCCTTCATGCGTCC 1550
Query 1907 TGTGTTTGGTGGTCGCGGATTCGTTCCCTTTGTCCCTGGTTCTCCGACTGAGAGAAGCAG 1966
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1551 TGTGTTTGGTGGTCGCGGTTTCGTTCCGTTTGTCCCTGGTTCTCCGACTGAGAGAAGCAC 1610
Query 1967 CCATGATCTTAGTAAACCTT 1986
||||||||| ||||||||||
Sbjct 1611 CCATGATCTCAGTAAACCTT 1630
> Ahg942396 jgi|Araly1|942396|scaffold_602940.1
Length=1837
Score = 1524 bits (825), Expect = 0.0
Identities = 1367/1622 (84%), Gaps = 63/1622 (4%)
Strand=Plus/Plus
Query 396 TCTGATCACGCATCTGTCGTTTCACTT-AATCTCTTTGTTGCCCTTCTATGTGCTTGTAT 454
||||||||||| ||||| ||| | || |||||||||||||| ||||| |||||||||||
Sbjct 77 TCTGATCACGCTTCTGTTGTTGC-GTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTAT 135
Query 455 CG-TCATTGGCCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACTGCTTTAT 513
| || |||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 136 TGTTC-TTGGTCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACCGCCTTAT 194
Query 514 TGATTGGGCTTGGCACTGGTGTCGTCATATTGTTGATTAGTAGAGGGAAAAA-CTCACAT 572
|||||||||| ||||||||||| | ||| ||||||||||||| ||| ||||| |||||||
Sbjct 195 TGATTGGGCTAGGCACTGGTGTTGCCATTTTGTTGATTAGTAAAGG-AAAAAGCTCACAT 253
Query 573 CT-CTTGGTCTTTAGTGAAGATCTCTTCTTTATATATCTTTTGCCACCCATAATATTCAA 631
|| || | |||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 254 CTTCTCG-TCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATTATATTCAA 312
Query 632 TGCAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTCCGAAATTTTGTAACTATTATGGCTTT 691
||||||||||||||| |||||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 313 TGCAGGGTTTCAAGTTAAAAAGAAGCAGTTTTTCCGCAATTTCGTGACTATTATG-CTTT 371
Query 692 T-GGCGCCATTGGGACCGTAGTTTCTTGCACCATAATATCTCTAGGTGCAATTCAGTTCT 750
| || || ||||||| | ||||||||||| || ||||||||||||| || |||||||
Sbjct 372 TTGGTGCTGTTGGGACTATTGTTTCTTGCACAATCATATCTCTAGGTGTAACACAGTTCT 431
Query 751 TTAAGAAATTAGACATTGGGACCTTTGACTTGGGCGATTTTCTTGCAATCGGCGCCATAT 810
|||||||||| ||||||||||||||||||||||| |||| |||||| ||||| || ||||
Sbjct 432 TTAAGAAATTGGACATTGGGACCTTTGACTTGGGTGATTATCTTGCTATCGGTGCAATAT 491
Query 811 TTGCTGCAACCGACTCTGTATGCACACTACAGGTTCTCAATCAAGATGAGACACCTTTGC 870
|||| ||||| || ||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 492 TTGCCGCAACAGATTCTGTGTGTACACTGCAGGTTCTGAATCAAGATGAGACACCTTTGC 551
Query 871 TTTACAGTCTTGTATTTGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGT-GCTCTTC 929
|||||||||||||||| |||||||| |||||||||||||||||||| ||||| | |||||
Sbjct 552 TTTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCCACATCAGTTGTTG-TCTTC 610
Query 930 AATGCTATTCAGAGTTTTGACCTCACCCACCTTAACCATGAAGCAGCTTTTCAAT-TTCT 988
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| | ||||
Sbjct 611 AATGCGATTCAGAGCTTTGACCTCACTCACCTAAACCATGAAGCTGCTTTTCA-TCTTCT 669
Query 989 TGGGAACtttttttATCTGTTTCTCTTGAGCACCG-GACTTGGTG-TCGCAACTGGTCTG 1046
||| ||||| || ||| |||||||| | || ||| | ||||||| | ||||| ||| ||
Sbjct 670 TGGAAACTTCTTGTATTTGTTTCTCCTAAGTACCTTG-CTTGGTGCT-GCAACCGGTTTG 727
Query 1047 ATAAGTGCTTATGTCATCAAGAAACTGTATTTTGGAAGGCACTCGACTGATCGAGAAGTT 1106
|||||||| |||||||||||||| | ||||||||||||||||| || || |||||||||
Sbjct 728 ATAAGTGCGTATGTCATCAAGAAGTTATATTTTGGAAGGCACTCAACAGACCGAGAAGTT 787
Query 1107 GCCCTCATGATGCTTATGGCTTATCTTTCATATATGCTTGCTGAGCTATTCGCCTTGAGT 1166
||||| |||||||||||||| |||||||| ||||||||||||||||| |||| |||||||
Sbjct 788 GCCCTTATGATGCTTATGGCATATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGT 847
Query 1167 GGTATCCTAACTGTATTTTTCTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTC 1226
||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 848 GGTATTCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAACGTA 907
Query 1227 ACCGAGAGCTCAAGAATTACTACCAAGCATGCCTTTGCTACTTTGTCGTTTCTCGCTGAG 1286
|| |||||||||||||||||||| |||||| ||||||| || ||||||||||| || |||
Sbjct 908 ACGGAGAGCTCAAGAATTACTACAAAGCATACCTTTGCAACATTGTCGTTTCTTGCGGAG 967
Query 1287 ACTTTTATTTTCCTCTACGTTGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTG 1346
|| ||||||||| | || |||||||||||||| |||||||| || || ||||||| ||||
Sbjct 968 ACATTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTG 1027
Query 1347 AGTGACAGC-CCGGGGACATCAGTT-GCAGTGAGCTCAATTCTAATGGGTCTAGTCATGC 1404
||||||| | ||||| ||||| | | |||||||||||||| ||||||||||| |||||||
Sbjct 1028 AGTGACA-CACCGGGAACATC-GATCGCAGTGAGCTCAATCCTAATGGGTCTGGTCATGC 1085
Query 1405 TTGGAAGAGCAGCTTTTGTCTTTCCTCTT-TCCTT-CTTATCAAACTTAGCCAAGAAGCA 1462
||||||||||||| ||||||||||| || || || || ||| ||| ||||||||||| |
Sbjct 1086 TTGGAAGAGCAGCATTTGTCTTTCCG-TTATCGTTTCT-ATCTAACCTAGCCAAGAAGAA 1143
Query 1463 TCAGAGCGAGAAAATCAGCATCAAGCA-GCAAGTTGTGATCTGGTGGGCTGGTCTAATGA 1521
|| ||||||||||||| | | || || ||| |||||||| |||||| ||||||| ||||
Sbjct 1144 CCAAAGCGAGAAAATCAACTTTAA-CATGCAGGTTGTGATTTGGTGGTCTGGTCTTATGA 1202
Query 1522 GAGGTGCTGTATCTATGGCTCTTGCCTACAATAAGTTTACAAGATCAGGGCACACAGAAT 1581
||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||| |
Sbjct 1203 GAGGTGCTGTATCTATGGCTCTTGCATACAATAAGTTTACAAGGGCCGGGCAAACAGA-T 1261
Query 1582 -TGCGCGGGAATGCAATCATGATTACCAGTACAATAACCGTCTGTCTTTTTAGCACCA-T 1639
| || ||||||||||||||||| |||||||| ||||||||||||||||||||||| | |
Sbjct 1262 GTACGAGGGAATGCAATCATGATCACCAGTACGATAACCGTCTGTCTTTTTAGCAC-AGT 1320
Query 1640 GGTGTTTGGTATGCTAACCAAACCACTGATTAGATACCTAATGCCACACCAAAAAGCGAC 1699
||||||||||||||| |||||||| || || || |||||| |||| ||||| || || |
Sbjct 1321 GGTGTTTGGTATGCTGACCAAACCGCTCATAAGCTACCTATTGCCGCACCAGAA--CG-C 1377
Query 1700 CACCAGTACCACGAGTATGTTATCGGACGATAGCACTCCGAAATCAATCCACATTCCGCT 1759
||||| | ||| |||||||| || || | ||| || ||||| ||||| || || |
Sbjct 1378 CACCA---C---GAGCATGTTATCTGATGACAACACCCCAAAATCCATCCATATCCCTTT 1431
Query 1760 CCTCGATGGTGAACAGCTAGATTCATTTGAG--TTACCTGGGAGCCACCAGGACGTGCCA 1817
|| || || | || ||||||| ||| || | |||| |||| | | |||||
Sbjct 1432 GCTAGACC---AAGA-CTC-ATTCATT-GAGCCTT-CA-GGGAACCAC-A--ATGTGCCT 1480
Query 1818 CGACCAAACAGCCTTCGAGGTTTCCTCATGCGCCCCACACGGACTGTCCACTATTACTGG 1877
|| || | || | || || ||| | | || ||||| || || || || || ||||||
Sbjct 1481 CGGCCTGATAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGG 1540
Query 1878 AGACAGTTTGATGA-TGCCTTCATGCGTCCTGTGTTTGGTGGTCGCGGATTCGTTCCCTT 1936
||||| |||||||| | |||||||||| || || ||||| ||||| || || || |||||
Sbjct 1541 AGACAATTTGATGACT-CCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGT-CCCTT 1598
Query 1937 T-GTCCCTGGTTCTCCGACTGAGAGAAGCAG-CCATGATCTTAGTAAA-CCTTGAGGAGA 1993
| |||||||||||||| |||||||||| | || |||||| ||||| ||| ||||| |
Sbjct 1599 TCGTCCCTGGTTCTCCAACTGAGAGAAACCCTCC-TGATCTCAGTAAGGCCT-GAGGA-A 1655
Query 1994 AA 1995
||
Sbjct 1656 AA 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5