BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05070.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477790 jgi|Araly1|477790|fgenesh2_kg.3__491__AT3G05070.1 1122 0.0
> Ahg477790 jgi|Araly1|477790|fgenesh2_kg.3__491__AT3G05070.1
Length=763
Score = 1122 bits (607), Expect = 0.0
Identities = 707/754 (94%), Gaps = 12/754 (2%)
Strand=Plus/Plus
Query 54 TTTGTCTCGAATTTATAGAGCTCGAAGCTTCAAGGAAGTTATAATGGCTAGTGAAGATGA 113
||||||| | |||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 19 TTTGTCTGGGATTTATAGAGCTCGAAGCTTCAAGGAAG-T-T-ATGGCTAGTGAAGATGA 75
Query 114 ATCGATTGAACAAAAAGCTGCTGCTCGTAAAGAGGCACTTAAAGCTCTAAGGGCAGCTCA 173
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 ATCGATAGAACAAAAAGCTGCTGCTCGTAAAGAGGCACTTAAAGCTCTAAGGGCAGCTCA 135
Query 174 GGAACTGTCTGAGACCAAGGAAGACGGAGAGGATGAAGCTGTCGAAGAAGATGGTCCAGC 233
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 136 GGAACTGTCTGAGACCAAGGAGGACGGAGAGGATGAAGCTGTCGAAGAAGATGGTCCAGC 195
Query 234 CATGAAGTTTAGAAACTATGTTCCCCAAGCTAAGGAGCTTCAGGATGGTAAACTAGCGCC 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 196 CATGAAGTTTAGAAACTATGTTCCCCAAGCTAAGGAGCTTCAGGATGGTAAACTTGCCCC 255
Query 294 ACCAGAGCTACCCAAATTCGAAGATCCGAT-CGTTGCACTTCCACCTGCTGTAGAGAAGA 352
||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 256 ACCAGAGTTACCCAAATTCGAAGATCCGATTC-TTGCACTTCCACCTGCTGTGGAGAAGA 314
Query 353 AAGAGGACCCATTTGTTAACATCGCTCCAAAGAAGCCAAACTGGGACCTCCGAAGAGATG 412
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 315 AAGAGGACCCATTTGTTAACATCGCTCCAAAGAAGCCGAACTGGGACCTCCGAAGAGATG 374
Query 413 TGCAGAAGAAGCTTGATAAGCTCGAAAGGCGGACTCAAAAGGCAATGCATAAACTCATGG 472
|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 375 TGCAGAAGAAGCTTGATAAGCTTGAAAGGCGGACCCAAAAGGCAATGTATAAACTCATGG 434
Query 473 AGGAGCAAGAGAAAGAACGTGAGATGGCTGAAGCTGATGGTAACACCATAGAAAGTTGAA 532
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AGGAGCATGAGAAAGAACGTGAGATGGCTGAAGCTGATGGTAACACCATAGAAAGTTGAA 494
Query 533 ACCCAACGACGTCATCAAAGAAAGCCACCACTGAACAGTATATTCTACTCGATTTTGTTT 592
||| ||||| ||||||||||| ||||||| ||||| |||||||||||| ||||||| |
Sbjct 495 ACCTGACGACACCATCAAAGAAA-CCACCACCGAACATTATATTCTACTCAATTTTGTAT 553
Query 593 AACTGTTAAAGCATTCGAAGTGAGTAGACCATGTAAAATCCTACAGCCATTGGCATAGAC 652
||||||| |||||||| |||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 554 AACTGTTTAAGCATTCAAAGTGACTAGACCATGTAAAACCCTACTGCCATTGGCATAGAC 613
Query 653 ATAGTAGGTTTATCTTCTTGTGTGAATCAAAGAAA-GTCGCAATTTATTTCCGAGTAGAA 711
||||||||||||| |||||||||||| ||| ||| ||||||||||||| | ||||||||
Sbjct 614 ATAGTAGGTTTATGTTCTTGTGTGAAGAAAAAAAAAGTCGCAATTTATT-CTGAGTAGAA 672
Query 712 TTAAGTGCGGTCCGGTTTTTCTCTAAATTTGGTTCAACATCGGTGGTAATCTAGTTTGAT 771
||||||| ||||| ||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 673 TTAAGTGTGGTCC--TTTCTCT-TAAATTTGGTTCAACATCGGTGTTAATCTAGTTTGAT 729
Query 772 CATTAAT-GGAACTGCGTTTTTTGGTTTGATTCG 804
|| |||| ||||||||||||||||||||||||||
Sbjct 730 CAGTAATTGGAACTGCGTTTTTTGGTTTGATTCG 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5