BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05100.1
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317378 jgi|Araly1|317378|fgenesh1_pm.C_scaffold_3000394 1570 0.0
> Ahg317378 jgi|Araly1|317378|fgenesh1_pm.C_scaffold_3000394
Length=1026
Score = 1570 bits (850), Expect = 0.0
Identities = 952/1003 (95%), Gaps = 0/1003 (0%)
Strand=Plus/Plus
Query 71 TTCCTCCTCTTCTTCTTCTCCGGCGATGCAGAAAGGAATCTTTGTCTCCATGCCTGTACT 130
||| || ||||| || ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 24 TTCTTCTTCTTCATCGTCTCCGGCGATGCAGAAAGGAGTCTTTGTGTCCATGCCTGTACT 83
Query 131 TGTTCTCACCGTTTCCTTTGTAGCTGCTGtcttcttcctcctctcttcttctttctcctc 190
|| ||||||||||| |||| |||||||||| ||||||||||||| |||||||| || ||
Sbjct 84 CGTACTCACCGTTTCGTTTGCAGCTGCTGTCATCTTCCTCCTCTCGTCTTCTTTATCGTC 143
Query 191 ttgctcctgtcctgaagctttatcttcttccCCGACCGACGCCGTTGAAGCTTCTGTCGG 250
|||||||||||||||| ||||||||||||||| || |||||||||||||||||| |||||
Sbjct 144 TTGCTCCTGTCCTGAATCTTTATCTTCTTCCCGGAACGACGCCGTTGAAGCTTCCGTCGG 203
Query 251 TGGAAGCGGTGGTGATGTGAGATTTGAGGACAGGATATCTCCGACGCAGGATGATATTGA 310
||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 204 TGGAAGCGGCGGTGATTTGAGATTTGAGGAGAGGATATCTCCGACGCAGGAGGATATTGA 263
Query 311 GTGGGTTAGAGATCTGATTAGATCCAACGGTTTGCATATGCAGAAGAATGAGCTTCGTAA 370
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 264 GTGGGTTAGAGATCTCATTAGATCCAACGGTTTGCATATGCAGAAGAATGAGCTTCGAAA 323
Query 371 AGGGATTAATCCTCGCACTAGAGATCAACAACTTGCAGATCTGATACAGTACAAGGGTAT 430
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 324 AGGGATTAATCCTCGCACTAGAGATCAACAACTCGCAGATCTGAAACAGTACAAGGGTAT 383
Query 431 ATCCCATTACGAAGGAGATGAAGCAAACAACCACACAGCTCTTCCATGTCCTGGTGAGTT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 ATCCCATTACGAAGGAGATGAAGCAAACAACCACACAGCTCTTCCATGTCCTGGTGAGTT 443
Query 491 ACTAGTTGAGCAGCATCACAGCAACTATGGTGAACCTTGGGCAGGTGGGCGCGATGTATT 550
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 444 ACTAGTTGAGCAGCATCACAGCAACTATGGTGAACCGTGGGCAGGTGGTCGCGATGTATT 503
Query 551 CGAGTTCTTAGCTGAATCATCCAGTCTTAAACCAAACTCTCGTGTTCTAGAAATTGGATG 610
||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 504 CGAGTTCTTGGCTGAATCATCCAATCTTAAACCAAACTCTCGTGTTCTTGAAATTGGATG 563
Query 611 TGGCACGTTACGCGTGGGTTTGCATTTCATTCGCTATCTTAGTCCCCAACATTTTCACTG 670
||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 564 CGGCACGTTACGTGTGGGTTTGCATTTCATCCGCTATCTCAATCCCCAACATTTTCACTG 623
Query 671 CCTTGAAAAGGACGAGCTTTCTCTAATGGCTGCTTTGAGGTACGAGCTTCCATCACAAGG 730
||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 624 CCTTGAAAAGGACGAACTTTCTCTGATGGCTGCTTTAAGGTACGAGCTTCCATCTCAAGG 683
Query 731 ACTTCTACATAAACGACCTCTTATAGTCAGAGGCGATGATATGGAATTCAGCAAGTTTGG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 ACTTCTACATAAACGACCTCTTATAGTCAGAGGCGATGATATGGAATTCAGCAAGTTTGG 743
Query 791 TTCAGATACAGCCTATGATCTGATATACGCAAGTGCAGTCTTTCTCCACATGCCTGATAA 850
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TTCAGATACAACCTATGATCTGATATACGCAAGTGCAGTCTTTCTCCACATGCCTGATAA 803
Query 851 ACTCGTGTGGACTGGACTCGAAAGATTAGTAGACAGGTTAAAACCTTACGACGGGAGAAT 910
||||||||||||||||||||||||| ||||||||| ||| || || ||||||||||||||
Sbjct 804 ACTCGTGTGGACTGGACTCGAAAGACTAGTAGACAAGTTGAAGCCCTACGACGGGAGAAT 863
Query 911 CTTCGTGTCACATAACGTAAAGTTTTGTTCACGGTTAGGACAAGACAAGTGTTCTCAGAA 970
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 864 CTTCGTGTCACATAACGTAAAGTTTTGTTCGCGGTTAGGACAAGACAAGTGTTCGCAGAA 923
Query 971 GCTAGCAAGTTTAGGACTTGAGTATCTTGGAAAACAAACACATGATAGCTTGCTGTTTAA 1030
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GCTAGCAAGCTTAGGACTTGAGTATCTTGGAAAACAAACACATGATAGCTTGCTGTTTAA 983
Query 1031 TCACTATGAGATCTGGTTCGGGTTTAGACGGTTTAAAACATAA 1073
|||||| |||||||||||||||||||||||||| |||||||||
Sbjct 984 TCACTACGAGATCTGGTTCGGGTTTAGACGGTTCAAAACATAA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52564538100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5