BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05110.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340677 jgi|Araly1|340677|fgenesh1_pg.C_scaffold_3000440 952 0.0
Ahg477773 jgi|Araly1|477773|fgenesh2_kg.3__474__AT3G04960.3 121 1e-26
> Ahg340677 jgi|Araly1|340677|fgenesh1_pg.C_scaffold_3000440
Length=1902
Score = 952 bits (515), Expect = 0.0
Identities = 630/683 (92%), Gaps = 17/683 (2%)
Strand=Plus/Plus
Query 451 AATGATGAGGATCATGAGCCAGTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCCGC 510
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1105 AATGATGAGGACCATGAGCCATTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCAGC 1164
Query 511 AAGACAATGAGCTCTTTCATGGCTGGTCAAGTATGGGCTCTGTATGATGGTATAGACTCT 570
||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 1165 AAGACAATGAGCTCTATCATGGCTGGTCAAGTATGGGCTCTATATGATAACATAGATTCA 1224
Query 571 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 1284
Query 631 ACATGGTTAGAACCTAAAGCTGAGGAATCTGTTCTTGCTGCTTGCGGCAGGTTCAAATGG 690
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1285 ACATGGTTAGAACCTAAAGATGAGGAATCTGTTCTTGCTGCTTGCGGTAGGTTCAAATGG 1344
Query 691 GAGAATACAGATACCATACAAAGTCACTTGGCCTTTTCTCATGAGATACATCCCATCATA 750
| ||||||||| ||| || |||| || ||||||||||| |||||||||||||||||||||
Sbjct 1345 GGGAATACAGAAACCGTAAAAAGCCATTTGGCCTTTTCCCATGAGATACATCCCATCATA 1404
Query 751 CGTGGCAAACACTTCATCGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 810
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 CGTGGCAAACACTTCATTGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 1464
Query 811 GACTGGAGCAAAAGCTGGAACAATGACCCGGAA-CAGCACAAGAC-TCCTTATAGGTACG 868
|||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||
Sbjct 1465 GACTGGAGCAAAAGCTGGAACAATAACC-GGAAACAGCACAA-ACCTCCTTATAGGTACG 1522
Query 869 ACTTTGTGGAAGTTCTAGTCAGCTTCGACGATTCTCTAGGCGTTGGAGTGGCCTATTTAG 928
||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1523 ACTTTGTGGAAGTTCTAGTCAACTTCGACGATTGTCTAGGTGTTGGAGTGGCCTATTTAG 1582
Query 929 GAAAGGTTCAGGGATTTGCATCGGTCTATAAACAAGCTGTGCAGCATGGAGTCATCTCTT 988
| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1583 GGAAGGTTCAAGGATTTGCATCGGTCTATAAACAAGCTGGGCAGCATGGAGTCATCTCAT 1642
Query 989 TCATGATCACACCGGAGGAAATGCAAAGATTCTCTCACAGAGTGCCGTCATTTAGGTTGA 1048
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1643 TCATGATCACACCAGAGGAAATGCAAAGATTCTCTCACAAAGTGCCGTCATTTAGGTTGA 1702
Query 1049 ATGGAGATGAGAAAGAGGGAAT-CCC-CAG-TT-----G--CTAT-CCCTGCTGCTATCC 1097
||||||| |||||||||||| | ||| | | || | ||| ||||||||||||||
Sbjct 1703 ATGGAGAGGAGAAAGAGGGAGTTCCCGCTGGTTCTTTCGAGCTAGACCCTGCTGCTATCC 1762
Query 1098 CCAGTTGC-ACACTCGAGCCTGA 1119
|||||| | |||||| ||| |||
Sbjct 1763 CCAGTT-CTACACTCAAGCGTGA 1784
Score = 143 bits (77), Expect = 3e-33
Identities = 105/118 (89%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 229 AGAGAGGTGGAAGCTAAGAGAAAGTTT-TTCGACCTAAAGGAGAAGGAACTTGAAGAGAA 287
||||| ||||||| ||||| |||||| || || |||| |||||||||||||| ||| ||
Sbjct 799 AGAGATGTGGAAGTTAAGATTAAGTTTCTT-GAGCTAAGGGAGAAGGAACTTGGAGA-AA 856
Query 288 -GGAGAAAGAGCTGGAATTGAAACAGAGACAAGTACAAGAACGATCAATACAAGATGG 344
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 857 GGGAGAAAGAGCTGGAATTGAAACAGAGAGAAGTACAAGAACGATCAATACAAGCTGG 914
> Ahg477773 jgi|Araly1|477773|fgenesh2_kg.3__474__AT3G04960.3
Length=2042
Score = 121 bits (65), Expect = 1e-26
Identities = 75/80 (94%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 151 GAGTCTGAGAGAATGAGAAAGGAGACTGAGCTGATTGAAACTTCTCTTAAGCAACTTGAA 210
|||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||
Sbjct 828 GAGTCTGAGAGAATGAGAAAGGAGACTGAGGTGGTGGAAACATCTCTTAAGCAACTTGAA 887
Query 211 GCAAGGGAGAATGAGCTTAG 230
|| |||||||||||||||||
Sbjct 888 GCGAGGGAGAATGAGCTTAG 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5