BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05110.1 Length=1119 Score E Sequences producing significant alignments: (Bits) Value Ahg340677 jgi|Araly1|340677|fgenesh1_pg.C_scaffold_3000440 952 0.0 Ahg477773 jgi|Araly1|477773|fgenesh2_kg.3__474__AT3G04960.3 121 1e-26 > Ahg340677 jgi|Araly1|340677|fgenesh1_pg.C_scaffold_3000440 Length=1902 Score = 952 bits (515), Expect = 0.0 Identities = 630/683 (92%), Gaps = 17/683 (2%) Strand=Plus/Plus Query 451 AATGATGAGGATCATGAGCCAGTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCCGC 510 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1105 AATGATGAGGACCATGAGCCATTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCAGC 1164 Query 511 AAGACAATGAGCTCTTTCATGGCTGGTCAAGTATGGGCTCTGTATGATGGTATAGACTCT 570 ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| || Sbjct 1165 AAGACAATGAGCTCTATCATGGCTGGTCAAGTATGGGCTCTATATGATAACATAGATTCA 1224 Query 571 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 1284 Query 631 ACATGGTTAGAACCTAAAGCTGAGGAATCTGTTCTTGCTGCTTGCGGCAGGTTCAAATGG 690 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 1285 ACATGGTTAGAACCTAAAGATGAGGAATCTGTTCTTGCTGCTTGCGGTAGGTTCAAATGG 1344 Query 691 GAGAATACAGATACCATACAAAGTCACTTGGCCTTTTCTCATGAGATACATCCCATCATA 750 | ||||||||| ||| || |||| || ||||||||||| ||||||||||||||||||||| Sbjct 1345 GGGAATACAGAAACCGTAAAAAGCCATTTGGCCTTTTCCCATGAGATACATCCCATCATA 1404 Query 751 CGTGGCAAACACTTCATCGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 810 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1405 CGTGGCAAACACTTCATTGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 1464 Query 811 GACTGGAGCAAAAGCTGGAACAATGACCCGGAA-CAGCACAAGAC-TCCTTATAGGTACG 868 |||||||||||||||||||||||| ||| |||| |||||||| || |||||||||||||| Sbjct 1465 GACTGGAGCAAAAGCTGGAACAATAACC-GGAAACAGCACAA-ACCTCCTTATAGGTACG 1522 Query 869 ACTTTGTGGAAGTTCTAGTCAGCTTCGACGATTCTCTAGGCGTTGGAGTGGCCTATTTAG 928 ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct 1523 ACTTTGTGGAAGTTCTAGTCAACTTCGACGATTGTCTAGGTGTTGGAGTGGCCTATTTAG 1582 Query 929 GAAAGGTTCAGGGATTTGCATCGGTCTATAAACAAGCTGTGCAGCATGGAGTCATCTCTT 988 | |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1583 GGAAGGTTCAAGGATTTGCATCGGTCTATAAACAAGCTGGGCAGCATGGAGTCATCTCAT 1642 Query 989 TCATGATCACACCGGAGGAAATGCAAAGATTCTCTCACAGAGTGCCGTCATTTAGGTTGA 1048 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1643 TCATGATCACACCAGAGGAAATGCAAAGATTCTCTCACAAAGTGCCGTCATTTAGGTTGA 1702 Query 1049 ATGGAGATGAGAAAGAGGGAAT-CCC-CAG-TT-----G--CTAT-CCCTGCTGCTATCC 1097 ||||||| |||||||||||| | ||| | | || | ||| |||||||||||||| Sbjct 1703 ATGGAGAGGAGAAAGAGGGAGTTCCCGCTGGTTCTTTCGAGCTAGACCCTGCTGCTATCC 1762 Query 1098 CCAGTTGC-ACACTCGAGCCTGA 1119 |||||| | |||||| ||| ||| Sbjct 1763 CCAGTT-CTACACTCAAGCGTGA 1784 Score = 143 bits (77), Expect = 3e-33 Identities = 105/118 (89%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 229 AGAGAGGTGGAAGCTAAGAGAAAGTTT-TTCGACCTAAAGGAGAAGGAACTTGAAGAGAA 287 ||||| ||||||| ||||| |||||| || || |||| |||||||||||||| ||| || Sbjct 799 AGAGATGTGGAAGTTAAGATTAAGTTTCTT-GAGCTAAGGGAGAAGGAACTTGGAGA-AA 856 Query 288 -GGAGAAAGAGCTGGAATTGAAACAGAGACAAGTACAAGAACGATCAATACAAGATGG 344 |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 857 GGGAGAAAGAGCTGGAATTGAAACAGAGAGAAGTACAAGAACGATCAATACAAGCTGG 914 > Ahg477773 jgi|Araly1|477773|fgenesh2_kg.3__474__AT3G04960.3 Length=2042 Score = 121 bits (65), Expect = 1e-26 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 151 GAGTCTGAGAGAATGAGAAAGGAGACTGAGCTGATTGAAACTTCTCTTAAGCAACTTGAA 210 |||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||| Sbjct 828 GAGTCTGAGAGAATGAGAAAGGAGACTGAGGTGGTGGAAACATCTCTTAAGCAACTTGAA 887 Query 211 GCAAGGGAGAATGAGCTTAG 230 || ||||||||||||||||| Sbjct 888 GCGAGGGAGAATGAGCTTAG 907 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41706471198 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5