BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05120.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477795 jgi|Araly1|477795|fgenesh2_kg.3__496__AT3G05120.1 2459 0.0
Ahg351756 jgi|Araly1|351756|fgenesh1_pg.C_scaffold_6002349 979 0.0
Ahg915481 jgi|Araly1|915481|Al_scaffold_0008_232 56.5 6e-07
> Ahg477795 jgi|Araly1|477795|fgenesh2_kg.3__496__AT3G05120.1
Length=1666
Score = 2459 bits (1331), Expect = 0.0
Identities = 1550/1651 (94%), Gaps = 34/1651 (2%)
Strand=Plus/Plus
Query 19 ATTAAACCCCATTTTGATCTCT--AGTTTTTTAAAAGCAGGAGATTTTCCTTTTCCCAGA 76
|||||||||||||||||||||| || |||| |||||||||||||||||||||| |||||
Sbjct 1 ATTAAACCCCATTTTGATCTCTCAAG-TTTTCAAAAGCAGGAGATTTTCCTTTT-CCAGA 58
Query 77 AA-AGAAATTTCCCAAATCAAAGTTTCGAGCTTTCACTTCTCGACTTGCAAATTCTCGTC 135
|| ||||||||| | |||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 59 AAGAGAAATTTCACTAATCAAAGTTTCTAGCTTTCACTTATCGACTTGAAAATTCTCGTC 118
Query 136 CTTTTTACTGAATTCGATCTGGGTTTTTGTTTTTGATTAGTAAAATAACaaaaaaaaaaa 195
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 CTTTTTACTGAATTCGATCTGGGTTTTTGTTTTTGATTAGTAAAATAAC-------AAAA 171
Query 196 aaaGGATTTATCAGAAATGGCTGCGAGCGATGAAGTTAATCTTATTGAGAGCAGAACAGT 255
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GGGGGGTTT-TCAGAAATGGCTGCGAGCGATGAAGTTAATCTTATTGAGAGCAGAACAGT 230
Query 256 GGTTCCTCTCAATACATGGGTTTTAATATCCAACTTCAAAGTAGCCTACAATATCCTTCG 315
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 231 GGTTCCTCTCAATACATGGGTTCTAATATCCAACTTCAAAGTAGCCTACAATATCCTGCG 290
Query 316 TCGCCCTGATGGAACCTTTAACCGACACTTAGCTGAGTATCTAGACCGTAAAGTCACTGC 375
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TCGCCCCGATGGAACCTTTAACCGACACTTAGCTGAGTATCTAGACCGTAAAGTCACTGC 350
Query 376 AAACGCCAATCCGGTTGATGGGGTTTTCTCGTTCGATGTCTTGATTGATCGCAGGATCAA 435
|||||||||||| || |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 351 AAACGCCAATCCTGTGGATGGGGTGTTCTCGTTCGATGTCTTGATTGATCGTAGAATCAA 410
Query 436 TCTTCTAAGCAGAGTCTATAGACCAGCTTATGCAGATCAAGAGCAACCTCCTAGTATTTT 495
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 TCTTCTAAGTAGAGTCTATAGACCAGCTTATGCAGATCAAGAGCAACCTCCTAGTGTTTT 470
Query 496 AGATCTCGAGAAGCCTGTTGATGGCGACATTGTCCCTGTTATATTGTTCTTCCATGGAGG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGATCTCGAGAAGCCTGTTGATGGCGACATTGTCCCTGTTATATTGTTCTTCCATGGAGG 530
Query 556 TAGCTTTGCTCATTCTTCTGCAAACAGTGCCATCTACGATACTCTTTGTCGCAGGCTTGT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TAGCTTTGCTCATTCTTCTGCAAACAGTGCCATCTACGATACTCTTTGTCGCAGGCTTGT 590
Query 616 TGGTTTGTGCAAGTGTGTTGTTGTCTCTGTGAATTATCGGCGTGCACCAGAGAATCCATA 675
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 591 TGGTTTGTGCAAGTGTGTTGTTGTCTCTGTGAACTATCGGCGTGCACCCGAGAATCCATA 650
Query 676 CCCTTGTGCTTATGATGATGGTTGGATTGCTCTTAATTGGGTTAACTCGAGATCTTGGCT 735
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 651 CCCTTGTGCTTATGATGATGGTTGGATTGCTCTTAATTGGGTTAACTCAAGAGCTTGGCT 710
Query 736 TAAATCCAAGAAAGACTCAAAGGTCCATATTTTCTTGGCTGGTGATAGCTCTGGAGGTAA 795
|||||||||||||||||||||||| ||||| ||| |||| || |||||||| ||||||||
Sbjct 711 TAAATCCAAGAAAGACTCAAAGGTTCATATATTCCTGGCGGGGGATAGCTCGGGAGGTAA 770
Query 796 CATCGCGCATAATGTGGCTTTAAGAGCGGGTGAATCGGGAATCGATGTTTTGGGGAACAT 855
||| ||||||||||| || ||| |||||||||||| |||||||||||||||||||||||
Sbjct 771 CATTGCGCATAATGTAGCGCTAAAAGCGGGTGAATCAGGAATCGATGTTTTGGGGAACAT 830
Query 856 TCTGCTGAATCCTATGTTTGGTGGGAATGAGAGAACGGAGTCTGAGAAAAGTTTGGATGG 915
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 831 TCTGCTGAATCCTATGTTTGGTGGGAATGAGAGGACGGAGTCTGAGAAAAGTTTGGATGG 890
Query 916 GAAATACTTTGTGACGGTTAGAGACCGCGATTGGTACTGGAAAGCGTTTT-TACCCGAGG 974
||||||||||||||| |||||||||||||||||||| |||||||| |||| |||| ||||
Sbjct 891 GAAATACTTTGTGACAGTTAGAGACCGCGATTGGTATTGGAAAGC-TTTTCTACCTGAGG 949
Query 975 GAGAAGATAGAGAGCATCCAGCGTGTAATCCGTTTAGCCCGAGAGGGAAAAGCTTAGAAG 1034
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 950 GAGAAGATAGAGAGCATCCAGCGTGTAATCCGTTTAGCCCAAGAGCGAAAAGCTTAGAAG 1009
Query 1035 GAGTGAGTTTCCCCAAGAGTCTTGTGGTTGTCGCGGGTTTGGATTTGATTAGAGATTGGC 1094
|| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1010 GATTGAGTTTCCCCAAGAGTCTTGTGGTTGTCGCAGGTTTGGATTTGATTCGAGATTGGC 1069
Query 1095 AGTTGGCATACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTTAAGCTTATGCATTTAG 1154
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1070 AGTTGGCTTACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTAAAGCTTATGCATTTAG 1129
Query 1155 AGAAAGCAACTGTTGGGTTTTACCTCTTGCCTAATAACAATCATTTCCATAATGTTATGG 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AGAAAGCAACTGTTGGGTTTTACCTCTTGCCTAATAACAATCATTTCCATAATGTTATGG 1189
Query 1215 ATGAGATTTCGGCGTTTGTAAACGCGGAATGTTAACACTGG-GTTAGAGAAAGAAGGTTG 1273
|||||||||| ||||||||||||| || |||||||| || ||||||||||||||||||
Sbjct 1190 ATGAGATTTCTGCGTTTGTAAACG---AACGTTAACAC-GGTGTTAGAGAAAGAAGGTTG 1245
Query 1274 TTTTAACAAAGCCAAGACATCTTTCAAACTAACACACAGGTGAATGTATTGCCTGTGGAT 1333
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1246 TTTTAACAGAGCCAAGACATCTTTCAAACTAACAAACAGGTGAATGTATTGCCTGTGGAT 1305
Query 1334 TCTCTCGTTTAGTTTTGTTTTTGTGTTTAGTATCTAAGTGTGTGGCGGTCTGCGGCAGCC 1393
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1306 TCTCTCGGTTAGTTTTGTTTTTGTGTTTAGTATCTAAGTGTGTGGCGGTTTGCGGCAGCC 1365
Query 1394 TTTGTGATGACTGTTTAAACGCTGGATTCTGAAACGCTAAAGCTTGTGGAAGAACAGTGA 1453
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1366 TTTGTGATGACTGTTTAAACGCTGGATTCTGAAACGCTAAAGCTTGTGGAAGAATAGTGA 1425
Query 1454 GGCGTTTAGAGACTTGGAAAGGAACCAAGCACTAGTAAAAATTTCTCCtttttttGTCTG 1513
||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||
Sbjct 1426 GGCGTTTAGAGACTTGGAAAGGAACAAAGCAGTAGTAAAAATTTCTCCTTTGT--GTCTG 1483
Query 1514 TAATATTTGGCATTTAGCTTTTACCCTTGAGCCTTTTTACTAACTAAAAGCTGA-TTTTT 1572
||||||||||| ||||||||||| ||||||| |||||| |||||||||||||| |||||
Sbjct 1484 TAATATTTGGCCTTTAGCTTTTAGCCTTGAGTTTTTTTATTAACTAAAAGCTGAATTTTT 1543
Query 1573 TCAGCATGAGAGTGGTAATTAGATATCTATAAATATATATATTTCAAGAATGTAATGTTT 1632
||||| || |||||||||||| | || |||||||| | | ||||||||||||||||
Sbjct 1544 TCAGCGTGGGAGTGGTAATTA-A-AT--ATAAATAT-T-T----CAAGAATGTAATGTTT 1593
Query 1633 ATACACAAATTTTAGTGATTTTGGTAAATGT 1663
|| ||||||| || ||||||||||||||||
Sbjct 1594 -TATACAAATTGTAATGATTTTGGTAAATGT 1623
> Ahg351756 jgi|Araly1|351756|fgenesh1_pg.C_scaffold_6002349
Length=1035
Score = 979 bits (530), Expect = 0.0
Identities = 882/1049 (84%), Gaps = 36/1049 (3%)
Strand=Plus/Plus
Query 212 ATGGCTGCG-AGCGATGAAGTTAATCTTATTGAGAGC-AGAACAGTGGTTCCTCTCAATA 269
||||||| | || || ||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1 ATGGCTG-GAAGTGAAGAAGTTAATCTTATTGAGAGCAAG-ACAGTGGTGCCTCTCAATA 58
Query 270 CATGGGTTTTAATATCCAACTTCAAAG-TAGCCTACAATATCCTTCGTCGCCCTGATGGA 328
|||||||||| ||||||||||| ||| ||||||||||| |||| || |||||||| |||
Sbjct 59 CATGGGTTTTGATATCCAACTT-TAAGCTAGCCTACAATCTCCTGCGCCGCCCTGACGGA 117
Query 329 ACCTTTAACCGACA-CTTAGCTGAGTATCTAGACCGTAAAGTCACTGCAAACGCCAATCC 387
|| |||||||| || ||| || |||| ||||||||| |||||| ||||||||||||| ||
Sbjct 118 ACTTTTAACCGCCACCTT-GCGGAGTTTCTAGACCGGAAAGTCCCTGCAAACGCCAACCC 176
Query 388 GGTTGATGGGGTTTTCTCGTTCGATGTCT-TGATTGATCG-CAGGATCAATCTTCTAAGC 445
||| ||||||| |||||||||||||| | | || ||||| || | |||| | || |||
Sbjct 177 TGTTAATGGGGTCTTCTCGTTCGATGT-TATCATCGATCGCCA-AACCAATATGCTTAGC 234
Query 446 AGAGTCTATAGACCAGCTTATGCAGATCAAGAGCAACCTCCTAGTATTTTAGATC-TCGA 504
|||| || ||||| ||| |||| | || | || ||||||||| |||| || |
Sbjct 235 CGAGTATACAGACCGGCTAATGCTGGTC-----C-CCCACCTAGTATTACCGATCTTC-A 287
Query 505 GAAGCCTGTTGATGGCGACATTGTCCCTGTTATAT-TGTTCTTCCATGGAGGTAGCTTTG 563
||| || |||||||| || || || |||||||| | | ||||| ||||| || |||||||
Sbjct 288 GAATCCCGTTGATGGTGAAATAGTGCCTGTTAT-TGTCTTCTTTCATGGTGGAAGCTTTG 346
Query 564 CTCATTCTTCTGCAAACAGTGCCATCTACGATACTCTTTGTCGCAGGCTTGTTGGTTTGT 623
| |||||||||||||||||||| || || ||||||||||| || ||||||||||||||||
Sbjct 347 CACATTCTTCTGCAAACAGTGCTATTTATGATACTCTTTGCCGTAGGCTTGTTGGTTTGT 406
Query 624 GCAAGTG-TGTTGTTGTCTCTGTGAATTATCGGCGTGCACCAGAGAATCCATACCCTTGT 682
| ||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 407 G-TGGTGCTGTTGTTGTCTCTGTGAACTATCGTCGTGCACCAGAGAATCGATACCCTTGT 465
Query 683 GCTTATGATGATGGTTGGATTGCTCTT-AATTGGGTTAACTCGAGATCTTGGCTTAAATC 741
|||||||||||||| ||| || | || |||||||| ||||| || ||||||||||||
Sbjct 466 GCTTATGATGATGGCTGGGCTG-TTTTGAATTGGGTCAACTCTAGTTCTTGGCTTAAAAG 524
Query 742 CAAGAAAGACTCAAAGGTCCATATTTTCTTGGCTGGTGATAGCTCTGGAGGTAACATCGC 801
||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||| |
Sbjct 525 CAAGAAAGATTCAAAGGTTCATATTTTCTTGGCGGGTGATAGCTCTGGGGGTAACATTGT 584
Query 802 GCATAATGTGGCTTTAAGAGCGGGTGAATCGGGAATCGATGTTTTGGGGAACATTCTGCT 861
||||||||| || ||||||||| ||| ||||| ||| ||||||||||||||||| ||||
Sbjct 585 GCATAATGTCGCACTAAGAGCGGTTGAGTCGGGGATCAATGTTTTGGGGAACATTTTGCT 644
Query 862 GAATCCTATGTTTGGTGGGAATGAGAGAACGGAGTCTGAGAAAAGTTTGGATGGGAAATA 921
|| ||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 645 TAACCCTATGTTTGGAGGGACCGAGAGAACGGAATCTGAGAAACGTTTGGATGGGAAATA 704
Query 922 CTTTGTGACGGTTAGAGACCGCGATTGGTACTGGAAAGCGTTT-TTACCCGAGGGAGAAG 980
|||||||||||||||||||||||||||||| |||| ||||||| || || ||||| ||||
Sbjct 705 CTTTGTGACGGTTAGAGACCGCGATTGGTATTGGAGAGCGTTTCTT-CCGGAGGGTGAAG 763
Query 981 ATAGAGAGCATCCAGCGTGTAATCCGTTTAGCCCGAGAGGGAAAAGCTTAGAAGGAGT-G 1039
| ||||||||||||||||||| |||||| |||||||| | || || |||||||| || |
Sbjct 764 ACAGAGAGCATCCAGCGTGTAGCCCGTTTGGCCCGAGAAGCAAGAGTTTAGAAGG-GTTG 822
Query 1040 AGTTTCCCCAAGAGTCTTGTGGTTGTCGCGGGTTTGGATTTGATT-AGAGATTGGCAGTT 1098
||||||||||||||||| || ||||| |||||||| ||||||||| | ||||||||| ||
Sbjct 823 AGTTTCCCCAAGAGTCTGGTCGTTGTAGCGGGTTTAGATTTGATTCA-AGATTGGCAATT 881
Query 1099 GGCA-TACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTTAAGCTTATGC-ATTTAGAG 1156
| | ||||||||||| |||||||||||||||||||| || |||||| | | | || |||
Sbjct 882 GA-AGTACGCGGAAGGACTCAAGAAAGCGGGTCAAGATGTGAAGCTTCT-CTACTTGGAG 939
Query 1157 AAAGCAACTGTTGGGTTTTACCTCTTGCCTAATAACAATCATTTCCATAATGTTATGGAT 1216
|||| || |||| || ||| | |||||||| |||||||| ||||||| ||||||||
Sbjct 940 CAAGCCACCATTGGCTTCTACTTATTGCCTAACAACAATCACTTCCATACCGTTATGGAC 999
Query 1217 GAGATTTCGGCGTTTGTAAACGCGGAATG 1245
||||| | || ||||||||||| |||||
Sbjct 1000 GAGATAGCTGCATTTGTAAACGCAGAATG 1028
> Ahg915481 jgi|Araly1|915481|Al_scaffold_0008_232
Length=1026
Score = 56.5 bits (30), Expect = 6e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Minus
Query 218 GCGAGCGATGAAGTTAATCTTATTGAGAGCAGA 250
||||||||||||||||||||||||||||| |||
Sbjct 51 GCGAGCGATGAAGTTAATCTTATTGAGAGTAGA 19
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5