BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05130.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903332 jgi|Araly1|903332|Al_scaffold_0003_460 412 4e-114
> Ahg903332 jgi|Araly1|903332|Al_scaffold_0003_460
Length=1278
Score = 412 bits (223), Expect = 4e-114
Identities = 305/343 (89%), Gaps = 11/343 (3%)
Strand=Plus/Plus
Query 1136 TTGAGCTTGAGGAGCGTATTTTTAGTCGGGAGAG-GAAGCTTGTTGAGCTGAATCGAAAG 1194
|||||||| ||||| |||||| |||||||||| | || |||||||||||||||| ||||
Sbjct 563 TTGAGCTTCAGGAGGGTATTTCTAGTCGGGAG-GCAAATCTTGTTGAGCTGAATCAAAAG 621
Query 1195 GCTGATGAGCTAACTCATGCTGTT-GCTGTGCTGCAAAAGAATTGTGATGATCAAACCAA 1253
|||| |||||||||||||||| || ||| ||| |||||| ||| |||||||||||||||
Sbjct 622 GCTGTTGAGCTAACTCATGCT-TTGGCTAAGCTACAAAAGGATTATGATGATCAAACCAA 680
Query 1254 GATTAACGGTAAGCTTAGCTGCAAAGTTGATCAGCTAAGCAATGCTCTTGCGCAAGTT-- 1311
|| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 681 GACTAACGACAAGCTTAGCTGCAAAGTTGGTCAGCTAAGCGATGCTCTTGCGCAAGTTGA 740
Query 1312 ---G-AGCTCAGGAGAGAAGAAGCTGATAAGGCACTTGATGAGGAGAAGAGAAATGGAGA 1367
| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 741 GAAGAAGCTCAAGAGAGAAGAAGCTGATAAGGCACTTGATGAGGAGAAGAGACATGGAGA 800
Query 1368 GGATCTTAAGGCAGAGGTTTTGAAATCAGAGAAGATGGTTGCAAAAACTCTAGAAGAGCT 1427
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 801 GGATCTTAAGGCAGAGGTTTTAAAATCAGAGAAGATGGTTGCAAAAACTTTAGAAGATTT 860
Query 1428 TGAGAAAGTTAAGATTGAGCGTAAGAGTTTATTTTCA-GCGAA 1469
||||||||||||||| | |||| ||||||| |||||| |||||
Sbjct 861 TGAGAAAGTTAAGATCGCGCGTGAGAGTTTGTTTTCAAGCGAA 903
Score = 355 bits (192), Expect = 6e-97
Identities = 243/268 (91%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 1540 CTC-AGAAAGGCTATGGAAGCTCTGAAAACAGAACTAGAATCAGCTGGAATGGATGCAAA 1598
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 913 CTCGAGAAA-GCTATGGATGCTCTGAAAACAGAACTAGAATCAGCTGGAATGGATGCAGA 971
Query 1599 ACGCAGCATGGTGATGCTAAAGAGTGCTGCATCTATGCTATCCCAATTAGAGAACCGAGA 1658
||||| | ||| ||||||||||| ||||||||||||| | || ||| ||||||||||||
Sbjct 972 ACGCAACTTGGGGATGCTAAAGAATGCTGCATCTATGTTGTCTCAACCAGAGAACCGAGA 1031
Query 1659 AGATAGATTGATTAGTGAGGAACAGAAGCGAGAAATTGGAACTGAACCCTATGCGATGGA 1718
||||||||||||||| ||| ||||||| ||||||| ||||| ||| |||||||| ||||
Sbjct 1032 AGATAGATTGATTAGCGAGCAACAGAATCGAGAAAAGGGAACAGAATCCTATGCGGTGGA 1091
Query 1719 GCTAGAGTCGATAGAGAAAGCTTTCAAAAACAAAGAGGACATAATCGAGGAAATGAAGAA 1778
||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 1092 GCTAGAGTCGATAGAGAAAGCATTCAGAAACAAAGAGGGCATAATCGAGGAAATGAAGAA 1151
Query 1779 AGAAGCTGAGATCATGAAGCAATCAACG 1806
|||||||||||||||||| |||||||||
Sbjct 1152 AGAAGCTGAGATCATGAAACAATCAACG 1179
Score = 172 bits (93), Expect = 7e-42
Identities = 112/121 (93%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 406 TTGGTGAAGGAGAAGAGTGATAGAGAGAGTGAGATTAGGGTTTTGAAAGGGGAAGCGATT 465
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 109 TTGGTGAAGGAGAAGAGTGATAGAGAGAGCGAGATTCGGGTTTTGAAAGGGGAAGCGATT 168
Query 466 GAGCTTACGGGTAAGGTTGAGATTGAGAAGGAACAGTTGAGGAAGGTTTGTGA-TGAGAG 524
||||||| ||| ||||||||||| || |||||||||||||||||||| ||||| || |||
Sbjct 169 GAGCTTATGGGAAAGGTTGAGATGGACAAGGAACAGTTGAGGAAGGTCTGTGAGTGTGAG 228
Query 525 G 525
|
Sbjct 229 G 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5