BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05140.1
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477797 jgi|Araly1|477797|fgenesh2_kg.3__498__AT3G05140.1 2553 0.0
> Ahg477797 jgi|Araly1|477797|fgenesh2_kg.3__498__AT3G05140.1
Length=1962
Score = 2553 bits (1382), Expect = 0.0
Identities = 1786/1973 (91%), Gaps = 59/1973 (3%)
Strand=Plus/Plus
Query 44 tgttaacttctttctatttcctttctatGATCCTCTTCTCTATTTTTAGGTTTTCAGGTT 103
|||||||||||||||||||| |||||||||| | | ||||||| ||||||||||||||||
Sbjct 30 TGTTAACTTCTTTCTATTTCTTTTCTATGAT-C-C-TCTCTATCTTTAGGTTTTCAGGTT 86
Query 104 TCTGAGAAAATCTTAAAAGTGTCCTACCAACACTCTTTCATGGCGGTAGACCAAAGCAAA 163
|| ||||| ||||||||||| | | | | |||||||||||||||||||||||||||||
Sbjct 87 TCCGAGAAGATCTTAAAAGT-T--T-CTGA-ACTCTTTCATGGCGGTAGACCAAAGCAAA 141
Query 164 GAAGCTTCTCCCGTGTGTTGTGCTCTTCCAATGTAATCATTCAATC-AAATCACTTTTTT 222
|||||||||||| ||| |||||||||||||||||||| |||||||| ||| ||| |||||
Sbjct 142 GAAGCTTCTCCCTTGTCTTGTGCTCTTCCAATGTAATTATTCAATCAAAAGCAC-TTTTT 200
Query 223 CTCTGTTTGTTCTTATATTTGATTTGAGtttttttttGGTAGACATGATATTAATGTCTA 282
|| ||||||| ||||||||||| || || |||| | | ||||||||||||| ||||| |
Sbjct 201 CTATGTTTGTGCTTATATTTGA-TTAAG-TTTTGTCT-GTAGACATGATATAAATGT-GA 256
Query 283 GAAGTT-TA-TCTTCTGTTCTGTTATGATTTTCATTGATACTTAAC-GAACGTTTAAGCA 339
|| || || ||| || |||| | || ||||||||||| |||| | || |||||||||
Sbjct 257 -AATTTCTATTCTGCTATTCTCTCATAATTTTCATTGAAACTTCCCAGAGTGTTTAAGCA 315
Query 340 GAATTAACGAACTTTCCCTGAATTTTCACCGATTTTCTCTTAATTTCCCGCAAAATTTAC 399
| ||||||||||||| || ||| || |||||||| ||| | |||||||
Sbjct 316 G-ATTAACGAACTTTACC-------TCA---ATCTTCTCTTACTTT----C--AATTTAC 358
Query 400 ATAAGAACGACATGTTTAGTCTGTTCTTTTCTTTTGAATCTCCCGAGGCAGGTACAACTC 459
| |||||| ||||||||||| ||||||||| | ||||||| ||||||||||||||||||
Sbjct 359 AGAAGAACAACATGTTTAGTTTGTTCTTTTAATCTGAATCTTCCGAGGCAGGTACAACTC 418
Query 460 TAAATATTCAAGTTATGTCACTGAAGAAGATCCAAACGACATAAATCATACGTCAAAACA 519
|||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||||||
Sbjct 419 TAAATATTCAAGTTATGTCACTGACGAAGATTCAAACGATATGAATCATACGACAAAACA 478
Query 520 TAAAAGAACCAACGCGTTTCTTATGAATTCTGCTTCAGCTCATGATCTAAGAT-TACTAG 578
||||||||||||||| |||||| ||||||||||||||||||| |||||||||| | ||||
Sbjct 479 TAAAAGAACCAACGCTTTTCTTTTGAATTCTGCTTCAGCTCACGATCTAAGATGT-CTAG 537
Query 579 AGGTAGATAAAGAGAAGCAAGACCCCAAATCACCAAGAGGAGCCCTCGAAGCCTGCTTAA 638
|||| || ||||||||||||||||| |||||||| ||||||||| | |||||||||||||
Sbjct 538 AGGTCGAGAAAGAGAAGCAAGACCCTAAATCACCGAGAGGAGCCTTAGAAGCCTGCTTAA 597
Query 639 CTCGTTGCTCAATCTCTTCCGCTTCATCTTCATCTGACGATCCTCCTCCAAACAGAGAAG 698
| |||| ||||||||||| | || |||| |||||||| |||||||||||||||||||
Sbjct 598 CCCGTTCCTCAATCTCTT---C--CA-CTTCCTCTGACGACCCTCCTCCAAACAGAGAAG 651
Query 699 CTATCGACAATGCAGATGCAGACACAGACGTACAGTGCAAGAATCACAGAGCATCTTCTA 758
||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 652 CTAGCGATAACGCAGATGCAGACACAGACGCACAGTGCAAGAATCACAGAGCATCTTCGA 711
Query 759 ATTGGGGAAAATTCTTCAAGCTATGGAAACGCAGATCCATGAAACGCCTCTCTTCCTTTC 818
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ACTGGGGAAAATTCTTCAAGCTATGGAAACGCAGATCCATGAAACGCCTCTCTTCCTTTC 771
Query 819 CTCCATTAAGTGGCGCCGCCCCACCGATCAT-CAAACA-AAACAAAAGTGCAGATCCAAA 876
||||||||||||||||||||||| ||||| | |||| | ||||||| | | | |
Sbjct 772 CTCCATTAAGTGGCGCCGCCCCATCGATC-TCCAAA-AGCAACAAAA---C--A--C--A 820
Query 877 CAT-GAATGGCATGGTCCTTCACGATATCTACGATTTCCAATCATCTCTCCAAAACTTCT 935
||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 821 CATCG-ATGGTATGGTCCTTCACGATATCTACGATTTCCAATCATCTCTCCACAACTTCT 879
Query 936 CAATATCTGACATCGAAATTGCAACTGACAATTTCAGTCCAGAAAACATTATCGGTAGAG 995
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 880 CAATCTCTGACATCGAAATTGCAACTGACAATTTCAGTCCAGAAAACATTATTGGAAGAG 939
Query 996 GCGGTTACGCCGATGTATACCAGGGAATTCTACCGGAAGGAAAGCTAATCGCTGTGAAAC 1055
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GCGGTTATGCTGAGGTATACCAGGGAATTCTACCGGAAGGAAAGCTAATCGCTGTGAAAC 999
Query 1056 GTTTGACAAAAGGCACACCGGACGAGCAAACAGCTGAGTTTCTATCGGAACTTGGGATTA 1115
| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1000 GCCTGACGAAAGGCACACCGGATGAGCAAACAGCCGAGTTTCTATCGGAACTTGGGATAA 1059
Query 1116 TTGCTCATGTTGATCATCCTAACACTGCCAAATTCATCGGTTGTTGCATCGAGGGTGGAA 1175
| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1060 TAGCTCATGTTGATCATCCGAACACAGCCAAATTCATCGGTTGTTGTATCGAGGGTGGAA 1119
Query 1176 TGCATCTCGTGTTCCGGCTATCTCCTCTTGGAAGCTTAGGCTCTCTCCTCCATGGACCAT 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TGCATCTCGTGTTCCGGCTATCTCCTCTTGGAAGCTTAGGCTCTCTCCTCCATGGACCAT 1179
Query 1236 CAAAATATAAGCTGACTTGGAGCAGACGTTACAATGTAGCGTTAGGAACAGCAGATGGAC 1295
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1180 CGAAATATAAGCTGACTTGGAGCAGACGTTACAATGTAGCGTTAGGAACAGCTGATGGAC 1239
Query 1296 TAGTGTATCTTCATGAGGGTTGTCAAAGACGAATCATTCATCGAGACATCAAAGCTGATA 1355
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1240 TAGTGTATCTTCACGAGGGTTGTCAAAGACGAATTATTCATCGAGACATCAAAGCCGATA 1299
Query 1356 ATATTCTTCTCACCGAAGATTTTCAACCGCAGATTTGCGACTTCGGGTTAGCCAAATGGC 1415
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1300 ATATTCTTCTCACCGAAGATTTTCAACCACAGATTTGCGATTTCGGGTTAGCCAAATGGC 1359
Query 1416 TTCCCAAGCAATTGACACACCATAACGTATCCAAATTTGAGGGAACATTCGGGTACTTTG 1475
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1360 TTCCCAAACAATTGACACACCATAACGTGTCCAAATTCGAGGGAACATTCGGGTACTTTG 1419
Query 1476 CACCTGAATATTTCATGCACGGAATCGTGGACGAGAAGACTGATGTTTTCGCTTTTGGAG 1535
|||| |||||||||||||||||||| || ||||||||||| |||||||| || |||||||
Sbjct 1420 CACCAGAATATTTCATGCACGGAATTGTAGACGAGAAGACAGATGTTTTTGCCTTTGGAG 1479
Query 1536 TTCTCCTCTTGGAGCTCATAACCGGACATCCTGCCCTTGACGAGTCTCAGCAGAGCCTTG 1595
|||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 1480 TTCTCCTCTTGGAGCTCATAACGGGCCACCCTGCTCTTGACGAGTCTCAGCAGAGCCTTG 1539
Query 1596 TCTTATGGGCTAAGCCGTTGCTAGAGAGAAAAGCTATAAAAGAATTGGTGGATCCATCTC 1655
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 1540 TCTTATGGGCTAAGCCGTTGCTAGAGAAAAAAGCTATAAGAGAATTGGTGGATCCGTCTC 1599
Query 1656 TTGGAGATGAGTATAACCGAGAAGAGCTTATCCGGTTAACTTCCACGGCTTCTTTATGCA 1715
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1600 TTGGAGATGAGTATAACAGAGAAGAGCTTATCCGGTTAACTTCCACAGCTTCTTTGTGCA 1659
Query 1716 TCGATCAATCTTCTCTTCTACGACCCCGGATGAGCCAGGTTGTGGAATTATTACTAGGCC 1775
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1660 TCGATCAGTCTTCTCTTCTACGACCCCGGATGAGCCAGGTTGTGGAATTACTACTAGGTC 1719
Query 1776 ACGAAGATGTCGTAATGACTCCAAGAGAAGCGAAGATAAAGATGATGCAACGAACGTATT 1835
|||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1720 ACGAAGGTGTCGTAATGACTCCAAGAGAAGCCAAGATAAAGATGATGCAACGCACGTATT 1779
Query 1836 CCGAAGAATTATTAGATAGTGTAGAATATAACTCCACTAAGTACTTGGGAGATCTTGATC 1895
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1780 CAGAAGAATTATTAGATAGTGTAGAATATAACTCCACAAAGTACTTGGGAGATCTTGATC 1839
Query 1896 GCATTCGAGAGGTTGCTTTAGCCTCTTGAAATCGATCCAAATTATTATTATGTAAAACTA 1955
| ||||||||| |||||||||| ||||||||| |||| |||||| ||||||| ||||||
Sbjct 1840 GTATTCGAGAGATTGCTTTAGCTTCTTGAAATTGATCAAAATTACAATTATGTGAAACTA 1899
Query 1956 TTTTGGTTTCTTTCATTGGTGAATGTAAATCGTTGGAAAAAATTACCaaaaaa 2008
|||||||||||||||||||||||||||| || | | |||||||||| ||||||
Sbjct 1900 TTTTGGTTTCTTTCATTGGTGAATGTAACTCATCGTAAAAAATTAC-AAAAAA 1951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76828024165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5