BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05150.1

Length=1640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1         2394    0.0  


> Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1
Length=1554

 Score = 2394 bits (1296),  Expect = 0.0
 Identities = 1436/1505 (95%), Gaps = 4/1505 (0%)
 Strand=Plus/Plus

Query  1     GTTTTTAGATCTAAAAACACGGTGCCTTCTCATTTCCTCCGGGCATTTTACGAAGAAAAT  60
             ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1     GTTTTTAGATCTAAAGACACGGTGCCTTCTCATTTCCTCCGGGCATTCTACGAAGAAAAT  60

Query  61    GGAGACAAGAAAAGACGACATGGAGAAAAGGAACGACAAATCCGAGCCGTTGCTGCTGCC  120
             || || || |||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct  61    GGCGAGAACAAAAGACGACATGGAGAAAATGAACGACAAAGCCGGGCCGTTGCTGCTGCC  120

Query  121   GGAGAATGGATCCGACGTCTCAGAAGAAGCATCATGGATGGTTTATCTAAGCACGATCAT  180
             ||||||||||||||| |||||||||||| | || |||||||||||||||||||| |||||
Sbjct  121   GGAGAATGGATCCGATGTCTCAGAAGAAACGTCGTGGATGGTTTATCTAAGCACAATCAT  180

Query  181   TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATACTCCGCTCCAACACAGTT  240
             |||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct  181   TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATATTCTGCTCCGACCCAGTT  240

Query  241   TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCGGTTTTCGGATCGATATT  300
             |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct  241   TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCAGTTTTTGGATCGATACT  300

Query  301   GAATATGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATTTCTGATTTCATCGGTCG  360
             |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  301   GAATGTGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATCTCTGATTTCATCGGTCG  360

Query  361   GAAAGGGGCCATGCGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT  420
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361   GAAAGGGGCCATGAGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT  420

Query  421   GGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTAACGGGTTATGGTTGCGGTAC  480
              |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct  421   CGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTGACGGGTTTTGGTTGCGGCAC  480

Query  481   CCTTTCCTTTGTGGTACCGGTCTTCATCGCCGAAATTAGTCCGAGAAAATTGAGAGGAGC  540
             ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct  481   CCTTTCCTTTGTGGTACCGGTATTCATCGCTGAAATTAGTCCAAGAAAATTGAGAGGCGC  540

Query  541   CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG  600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541   CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG  600

Query  601   CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT  660
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601   CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT  660

Query  661   CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCAC-A  719
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  661   CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCACCA  720

Query  720   GTGATTTTGAAATTGCGTTGCAAAAACTGAGGGGTCCTCAGGCCAATATCACAAGAGAAG  779
               ||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||
Sbjct  721   C-GATTTTGAAATTGCGTTGCAAAAGCTGAGGGGTCCTCACACCAATATCAGAAGAGAAG  779

Query  780   CCGGGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCGAAAGCCACATTGATGG  839
             ||| ||||||||||||||||||||||||||||||||||||||| ||||||||  || |||
Sbjct  780   CCGAGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCAAAAGCCACGCTG-TGG  838

Query  840   -ACCTTATTGACAAAAAGAATATTCGATTTGTGATAGTTGGAGTTGGTTTGATGTTTTTC  898
              |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  839   GACCTTATTGACAAAAAGAATATTCGATTTGTGATTGTTGGAGTTGGTTTGATGTTTTTC  898

Query  899   CAACAATTCGTTGGAATTAATGGCGTTATCTTCTACGCACAACAAATATTCGTATCAGCA  958
             ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct  899   CAACAATTCGTTGGAATAAATGGTGTTATCTTCTACGCACAACAAATATTCGTATCGGCA  958

Query  959   GGAGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTCGTTCTCACAGCA  1018
             || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  959   GGGGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTTGTTCTTACAGCA  1018

Query  1019  CTAGGCGCAACATTGCTAATTGATCGGCTTGGAAGAAGGCCACTTCTTATGGCTTCAGCT  1078
             || || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  1019  CTCGGTGCAACATTGCTAATTGATCGTCTTGGTAGAAGGCCACTTCTTATGGCTTCAGCT  1078

Query  1079  GTTGGGATGCTGATTGGATGTTTGCTCATCGGAAATTCATTTCTTTTGAAGGCTCATGGT  1138
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1079  GTTGGGATGCTGATTGGATGTTTGCTCATTGGAAATTCATTTCTTTTGAAGGCTCATGGT  1138

Query  1139  TTAGCACTTGACATCATTCCGGCTCTGGCAGTTAGTGGTGTCTTGGTCTACATCGGTTCG  1198
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  1139  TTAGCACTTGACATCATTCCGGCCCTGGCAGTTAGTGGTGTCTTGGTCTACATTGGTTCG  1198

Query  1199  TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT  1258
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1199  TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT  1258

Query  1259  TTGAAAGGAACTGCCGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC  1318
              ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1259  ATGAAAGGAACTGCTGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC  1318

Query  1319  TCATTCACTTTCAACTTTCTCATGATTTGGAGCCCTCATGGTACATTTTATGTGTATGGT  1378
             || |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct  1319  TCCTTCACTTTCAACTTTCTCATGATTTGGAGCACTCATGGTACATTTTATGTATATGGT  1378

Query  1379  GGGGTATGTGTATTGGCTATTATCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA  1438
             || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1379  GGCGTATGTGTATTTGCTATTGTCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA  1438

Query  1439  ACCTTGGAAGAGATTCAAGCAATGATGATGTAACTCTGTAAATATATAATACATGTTAAt  1498
             ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct  1439  ACCTTGGAAGAGATTCAAGCAATGATGATGTAATTCTATAATTATATAATACATGTTAAT  1498

Query  1499  ttttt  1503
             |||||
Sbjct  1499  TTTTT  1503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61477655430


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5