BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05150.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1 2394 0.0
> Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1
Length=1554
Score = 2394 bits (1296), Expect = 0.0
Identities = 1436/1505 (95%), Gaps = 4/1505 (0%)
Strand=Plus/Plus
Query 1 GTTTTTAGATCTAAAAACACGGTGCCTTCTCATTTCCTCCGGGCATTTTACGAAGAAAAT 60
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 GTTTTTAGATCTAAAGACACGGTGCCTTCTCATTTCCTCCGGGCATTCTACGAAGAAAAT 60
Query 61 GGAGACAAGAAAAGACGACATGGAGAAAAGGAACGACAAATCCGAGCCGTTGCTGCTGCC 120
|| || || |||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 61 GGCGAGAACAAAAGACGACATGGAGAAAATGAACGACAAAGCCGGGCCGTTGCTGCTGCC 120
Query 121 GGAGAATGGATCCGACGTCTCAGAAGAAGCATCATGGATGGTTTATCTAAGCACGATCAT 180
||||||||||||||| |||||||||||| | || |||||||||||||||||||| |||||
Sbjct 121 GGAGAATGGATCCGATGTCTCAGAAGAAACGTCGTGGATGGTTTATCTAAGCACAATCAT 180
Query 181 TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATACTCCGCTCCAACACAGTT 240
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 181 TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATATTCTGCTCCGACCCAGTT 240
Query 241 TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCGGTTTTCGGATCGATATT 300
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 241 TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCAGTTTTTGGATCGATACT 300
Query 301 GAATATGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATTTCTGATTTCATCGGTCG 360
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GAATGTGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATCTCTGATTTCATCGGTCG 360
Query 361 GAAAGGGGCCATGCGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAGGGGCCATGAGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT 420
Query 421 GGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTAACGGGTTATGGTTGCGGTAC 480
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 421 CGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTGACGGGTTTTGGTTGCGGCAC 480
Query 481 CCTTTCCTTTGTGGTACCGGTCTTCATCGCCGAAATTAGTCCGAGAAAATTGAGAGGAGC 540
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 481 CCTTTCCTTTGTGGTACCGGTATTCATCGCTGAAATTAGTCCAAGAAAATTGAGAGGCGC 540
Query 541 CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG 600
Query 601 CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT 660
Query 661 CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCAC-A 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCACCA 720
Query 720 GTGATTTTGAAATTGCGTTGCAAAAACTGAGGGGTCCTCAGGCCAATATCACAAGAGAAG 779
||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 721 C-GATTTTGAAATTGCGTTGCAAAAGCTGAGGGGTCCTCACACCAATATCAGAAGAGAAG 779
Query 780 CCGGGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCGAAAGCCACATTGATGG 839
||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 780 CCGAGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCAAAAGCCACGCTG-TGG 838
Query 840 -ACCTTATTGACAAAAAGAATATTCGATTTGTGATAGTTGGAGTTGGTTTGATGTTTTTC 898
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 GACCTTATTGACAAAAAGAATATTCGATTTGTGATTGTTGGAGTTGGTTTGATGTTTTTC 898
Query 899 CAACAATTCGTTGGAATTAATGGCGTTATCTTCTACGCACAACAAATATTCGTATCAGCA 958
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 899 CAACAATTCGTTGGAATAAATGGTGTTATCTTCTACGCACAACAAATATTCGTATCGGCA 958
Query 959 GGAGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTCGTTCTCACAGCA 1018
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 959 GGGGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTTGTTCTTACAGCA 1018
Query 1019 CTAGGCGCAACATTGCTAATTGATCGGCTTGGAAGAAGGCCACTTCTTATGGCTTCAGCT 1078
|| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1019 CTCGGTGCAACATTGCTAATTGATCGTCTTGGTAGAAGGCCACTTCTTATGGCTTCAGCT 1078
Query 1079 GTTGGGATGCTGATTGGATGTTTGCTCATCGGAAATTCATTTCTTTTGAAGGCTCATGGT 1138
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1079 GTTGGGATGCTGATTGGATGTTTGCTCATTGGAAATTCATTTCTTTTGAAGGCTCATGGT 1138
Query 1139 TTAGCACTTGACATCATTCCGGCTCTGGCAGTTAGTGGTGTCTTGGTCTACATCGGTTCG 1198
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1139 TTAGCACTTGACATCATTCCGGCCCTGGCAGTTAGTGGTGTCTTGGTCTACATTGGTTCG 1198
Query 1199 TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT 1258
Query 1259 TTGAAAGGAACTGCCGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC 1318
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGAAAGGAACTGCTGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC 1318
Query 1319 TCATTCACTTTCAACTTTCTCATGATTTGGAGCCCTCATGGTACATTTTATGTGTATGGT 1378
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1319 TCCTTCACTTTCAACTTTCTCATGATTTGGAGCACTCATGGTACATTTTATGTATATGGT 1378
Query 1379 GGGGTATGTGTATTGGCTATTATCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA 1438
|| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGCGTATGTGTATTTGCTATTGTCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA 1438
Query 1439 ACCTTGGAAGAGATTCAAGCAATGATGATGTAACTCTGTAAATATATAATACATGTTAAt 1498
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 1439 ACCTTGGAAGAGATTCAAGCAATGATGATGTAATTCTATAATTATATAATACATGTTAAT 1498
Query 1499 ttttt 1503
|||||
Sbjct 1499 TTTTT 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5