BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05150.1 Length=1640 Score E Sequences producing significant alignments: (Bits) Value Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1 2394 0.0 > Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1 Length=1554 Score = 2394 bits (1296), Expect = 0.0 Identities = 1436/1505 (95%), Gaps = 4/1505 (0%) Strand=Plus/Plus Query 1 GTTTTTAGATCTAAAAACACGGTGCCTTCTCATTTCCTCCGGGCATTTTACGAAGAAAAT 60 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 GTTTTTAGATCTAAAGACACGGTGCCTTCTCATTTCCTCCGGGCATTCTACGAAGAAAAT 60 Query 61 GGAGACAAGAAAAGACGACATGGAGAAAAGGAACGACAAATCCGAGCCGTTGCTGCTGCC 120 || || || |||||||||||||||||||| |||||||||| ||| ||||||||||||||| Sbjct 61 GGCGAGAACAAAAGACGACATGGAGAAAATGAACGACAAAGCCGGGCCGTTGCTGCTGCC 120 Query 121 GGAGAATGGATCCGACGTCTCAGAAGAAGCATCATGGATGGTTTATCTAAGCACGATCAT 180 ||||||||||||||| |||||||||||| | || |||||||||||||||||||| ||||| Sbjct 121 GGAGAATGGATCCGATGTCTCAGAAGAAACGTCGTGGATGGTTTATCTAAGCACAATCAT 180 Query 181 TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATACTCCGCTCCAACACAGTT 240 |||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct 181 TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATATTCTGCTCCGACCCAGTT 240 Query 241 TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCGGTTTTCGGATCGATATT 300 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | Sbjct 241 TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCAGTTTTTGGATCGATACT 300 Query 301 GAATATGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATTTCTGATTTCATCGGTCG 360 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 301 GAATGTGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATCTCTGATTTCATCGGTCG 360 Query 361 GAAAGGGGCCATGCGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT 420 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAAAGGGGCCATGAGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT 420 Query 421 GGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTAACGGGTTATGGTTGCGGTAC 480 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || Sbjct 421 CGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTGACGGGTTTTGGTTGCGGCAC 480 Query 481 CCTTTCCTTTGTGGTACCGGTCTTCATCGCCGAAATTAGTCCGAGAAAATTGAGAGGAGC 540 ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || Sbjct 481 CCTTTCCTTTGTGGTACCGGTATTCATCGCTGAAATTAGTCCAAGAAAATTGAGAGGCGC 540 Query 541 CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG 600 Query 601 CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT 660 Query 661 CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCAC-A 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 661 CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCACCA 720 Query 720 GTGATTTTGAAATTGCGTTGCAAAAACTGAGGGGTCCTCAGGCCAATATCACAAGAGAAG 779 ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 721 C-GATTTTGAAATTGCGTTGCAAAAGCTGAGGGGTCCTCACACCAATATCAGAAGAGAAG 779 Query 780 CCGGGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCGAAAGCCACATTGATGG 839 ||| ||||||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 780 CCGAGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCAAAAGCCACGCTG-TGG 838 Query 840 -ACCTTATTGACAAAAAGAATATTCGATTTGTGATAGTTGGAGTTGGTTTGATGTTTTTC 898 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 839 GACCTTATTGACAAAAAGAATATTCGATTTGTGATTGTTGGAGTTGGTTTGATGTTTTTC 898 Query 899 CAACAATTCGTTGGAATTAATGGCGTTATCTTCTACGCACAACAAATATTCGTATCAGCA 958 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| Sbjct 899 CAACAATTCGTTGGAATAAATGGTGTTATCTTCTACGCACAACAAATATTCGTATCGGCA 958 Query 959 GGAGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTCGTTCTCACAGCA 1018 || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 959 GGGGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTTGTTCTTACAGCA 1018 Query 1019 CTAGGCGCAACATTGCTAATTGATCGGCTTGGAAGAAGGCCACTTCTTATGGCTTCAGCT 1078 || || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1019 CTCGGTGCAACATTGCTAATTGATCGTCTTGGTAGAAGGCCACTTCTTATGGCTTCAGCT 1078 Query 1079 GTTGGGATGCTGATTGGATGTTTGCTCATCGGAAATTCATTTCTTTTGAAGGCTCATGGT 1138 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1079 GTTGGGATGCTGATTGGATGTTTGCTCATTGGAAATTCATTTCTTTTGAAGGCTCATGGT 1138 Query 1139 TTAGCACTTGACATCATTCCGGCTCTGGCAGTTAGTGGTGTCTTGGTCTACATCGGTTCG 1198 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1139 TTAGCACTTGACATCATTCCGGCCCTGGCAGTTAGTGGTGTCTTGGTCTACATTGGTTCG 1198 Query 1199 TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT 1258 Query 1259 TTGAAAGGAACTGCCGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC 1318 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 ATGAAAGGAACTGCTGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC 1318 Query 1319 TCATTCACTTTCAACTTTCTCATGATTTGGAGCCCTCATGGTACATTTTATGTGTATGGT 1378 || |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1319 TCCTTCACTTTCAACTTTCTCATGATTTGGAGCACTCATGGTACATTTTATGTATATGGT 1378 Query 1379 GGGGTATGTGTATTGGCTATTATCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA 1438 || ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1379 GGCGTATGTGTATTTGCTATTGTCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA 1438 Query 1439 ACCTTGGAAGAGATTCAAGCAATGATGATGTAACTCTGTAAATATATAATACATGTTAAt 1498 ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| Sbjct 1439 ACCTTGGAAGAGATTCAAGCAATGATGATGTAATTCTATAATTATATAATACATGTTAAT 1498 Query 1499 ttttt 1503 ||||| Sbjct 1499 TTTTT 1503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61477655430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5