BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05155.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340683 jgi|Araly1|340683|fgenesh1_pg.C_scaffold_3000446 1517 0.0
Ahg477829 jgi|Araly1|477829|fgenesh2_kg.3__530__AT3G05400.1 778 0.0
Ahg903355 jgi|Araly1|903355|Al_scaffold_0003_483 483 2e-135
> Ahg340683 jgi|Araly1|340683|fgenesh1_pg.C_scaffold_3000446
Length=1386
Score = 1517 bits (821), Expect = 0.0
Identities = 930/982 (95%), Gaps = 9/982 (1%)
Strand=Plus/Plus
Query 78 ATGGAGGGAGAGAATAGTAGC---ATTGAGAAAGGATTATTATTGATAAGGAAGGAAGAG 134
||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||
Sbjct 1 ATGGAGGGAGAGAATAGGAGCATTATTGAGAAAGGATTATTATTGGTAAATAAGGAAGAG 60
Query 135 AGTGCAAATACAACTCCATTTCTTGTCTTCACCACTTTCATCATTGTCTCTGCTTCCTTC 194
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AGTGCAAATACAACTCCACTTCTTGTCTTCACCACTTTCATCATTGTCTCTGCCTCCTTC 120
Query 195 TCCTTT-GGCGTTGCCTTAGGACATACTGCTGGTACAATGGCCTCCATTATGGAAGATCT 253
| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 121 T-CTTTCGGCGTTGCCTTAGGGCATACTGCTGGTACAATGGCCTCCATTATTGAAGATCT 179
Query 254 TGATCTTTCTATCACACAATTTTCTGTATTTGGTTCACTATTGACATTTGGAGGAATGAT 313
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 180 TGATCTTTCTATCACACAATTTTCTGTATTTGGTTCGTTGTTGACATTTGGAGGAATG-T 238
Query 314 T-GGAGCACTATTTAGCGCCACAATTGCAGATTCATTTGGTTGTAAAATGACTTTGTGGA 372
| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TGGGTGCAATATTTAGCGCCACGATTGCAGATTCATTTGGTTGTAAAATGACTTTGTGGA 298
Query 373 TCACTGAGGTATTCTGCATAAGTGGATGGCTTGCAATTGCACTAGCCAAGAACATTATTT 432
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 299 TCTCTGAGGTATTCTGCATAACTGGATGGCTTGCAATTGCACTAGCCAAGAATATTATTT 358
Query 433 GGCTGGACTTGGGACGATTCTTTGTAGGAATTGGAGTTGGTCTCCTTAGTTACGTGGTTC 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGCTGGACTTGGGACGATTCTTTGTAGGAATTGGAGTTGGTCTCCTTAGTTACGTGGTTC 418
Query 493 CTGTATATATCGCAGAAATAACTCCTAAAACTGTGCGAGGCACTTTTACATTTAGTAATC 552
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 419 CTGTATATATTGCAGAAATAACTCCCAAAACTGTGCGAGGCACTTATACATTTAGTAATC 478
Query 553 AGTTATTGCAAAATTGTGGAGTCGCAACGGCGTATTACCTTGGAAATTTCATGTCATGGA 612
|||| |||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||
Sbjct 479 AGTTGTTGCAAAATTGTGGGGTGGCAACCGCGTATTACCTAGGAAATTTCATATCATGGA 538
Query 613 GAATAATAGCCTTAATAGGCATACTTCCATGCTTGATACAACTTGTTGGGTTGTTTTTCG 672
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 GAATCATAGCCTTAATCGGCATACTTCCATGCTTGATACAACTTGTTGGATTGTTTTTCG 598
Query 673 TCCCCGAATCTCCAAGATGGTTGGCAAAAGAAGGTCGTGACGAAGAATGTGAGGTTGTTC 732
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCCCCGAGTCTCCAAGATGGTTGGCAAAAGAAGGTCGTGACGAAGAATGTGAGGTTGTTC 658
Query 733 TTCAGAAACTAAGAGGAGATGAAGCGGATATTGTGAAGGAAACTCA-AGAAATCTTGATT 791
|||||||| |||||||||| |||||||||||||||||||||||| | ||||||| |||||
Sbjct 659 TTCAGAAATTAAGAGGAGACGAAGCGGATATTGTGAAGGAAACT-AGAGAAATCATGATT 717
Query 792 TCTGTTGAGGCTTCTGCGAATATCAGCATGCGTAGTCTTTTCAAAAAGAAATATACTCAT 851
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 718 TCTGTTGATGCTTCCGCGAATATCAGCATGCGTAGTCTTTTCAAAAGGAAATATTCTCAT 777
Query 852 CAACTTACAATTGGTATAGGTTTGATGCTTCTGCAACAGTTAAGTGGGAGTGCAGGATTA 911
||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 CAACTTACAATCGGTGTAGGTTTGATGCTTCTGCAACAGTTAAGTGGAAGTGCAGGATTA 837
Query 912 GGTTATTACACTGGTAGCGTATTTGATCTTGCCGGATTTCCTTCTCGGATTGGGATGACG 971
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGTTATTACGTTGGTAGCGTGTTTGATCTTGCCGGATTTCCTTCTCGGATTGGGATGACG 897
Query 972 GTGTTGTCTATTGTCGTGGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGG 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTGTTGTCTATTGTCGTGGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGG 957
Query 1032 GGAAGAAGACCGCTTCTTATGG 1053
||||||||||||||||||||||
Sbjct 958 GGAAGAAGACCGCTTCTTATGG 979
Score = 202 bits (109), Expect = 6e-51
Identities = 113/115 (98%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1149 GGCATCGGCATTTGGTTTATGTTTAGGTTGTATCTCTCTTGCATTAGCGTTTGGATTGAA 1208
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GGCATCGGCATTTGGGTTATGTTTAGGTTGTATCTCTCTTGCATTAGCGTTTGGATTGAA 1037
Query 1209 AGGTGTCCCTGGGGTTAATGTAAATGTTACTCCCACTTTGGCATTTATAGGAATA 1263
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AGGTGTCCCTGGGATTAATGTAAATGTTACTCCCACTTTGGCATTTATAGGAATA 1092
> Ahg477829 jgi|Araly1|477829|fgenesh2_kg.3__530__AT3G05400.1
Length=1621
Score = 778 bits (421), Expect = 0.0
Identities = 825/1015 (81%), Gaps = 48/1015 (5%)
Strand=Plus/Plus
Query 65 TTGAGTGAAGAAAATGGAGGGAGAGAATAGTAGCATTGAGAAAGGATTATTATTGATAAG 124
|||| ||||||| ||||| |||||||| | | || |||||||||||||||||| ||
Sbjct 87 TTGATTGAAGAATATGGAAGGAGAGAA-A--AATATGGAGAAAGGATTATTATTGGCAAA 143
Query 125 GAAGGAAGAGAGTGCAAATACAACTCCATTTCTTGTCTTCACCACTTTCATCATTGTCTC 184
|||||||||| |||||||||||||||| | ||| ||||| |||| ||||||||||||||
Sbjct 144 AAAGGAAGAGACTGCAAATACAACTCCACTCCTTATCTTCTCCACCTTCATCATTGTCTC 203
Query 185 TGCTTCCTTCTCCTTTGGCGTTGCCTTAGGACATACTGCTGGTACAATGGCCTCCATTAT 244
||| |||||| ||||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct 204 TGCCTCCTTCACCTTTGGCGCTGCCATAGGTTATACTGCAGATACAATGTCCTCCATTAT 263
Query 245 GGAAGATCTT-GATCTTTCTATCACACAATTTTCTG-TATTTGGTTCACT-ATTGACATT 301
| ||| ||| ||||||||| || |||||||||| | | |||||||| | | ||| ||
Sbjct 264 GTCAGA-CTTGGATCTTTCTCTCGCACAATTTTC-GCTGTTTGGTTCGTTGA-CGACGTT 320
Query 302 TGGAGGAATGATTGGAGCACTATTTAGCGCCACAA-TTGCAGATTCATTTGGTTGTAAAA 360
|||||||||||| || ||| |||| ||||||| || ||||| | | || ||| |||||
Sbjct 321 TGGAGGAATGATCGGTGCAATATTCAGCGCCA-AAGCTGCAGCTGCCTTCGGTCATAAAA 379
Query 361 TGACTTTGTGGATCACTGAGGTATTCTGCATAAGTGGATGGCTTGCAATTGCACTAGCCA 420
|||| |||||| | |||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct 380 TGACGTTGTGGGTGGCTGATCTATTCTGCATAACTGGTTGGCTTGCAATTGCACTAGCCA 439
Query 421 AGAACATTATTTGGCTGGACTTGGGACGATTCTTT-GTAGGAATTGGAGTTGGTCTCCTT 479
|||| ||||||||||| ||| |||| ||||| ||| || |||||||||||||||||| ||
Sbjct 440 AGAATATTATTTGGCTTGACATGGGGCGATT-TTTGGTGGGAATTGGAGTTGGTCTCATT 498
Query 480 AGTTACGTGGTTCCTGTATATATCGCAGAAATAACTCCTAA-AACTGTGCGAGGCACTTT 538
|| |||||||||||||||||||| ||||||||||| || || || || |||| ||||
Sbjct 499 AGCTACGTGGTTCCTGTATATATTGCAGAAATAACACCCAAGCAC-GTAAGAGGGGCTTT 557
Query 539 TACATTTAGTAATCAG-TTATTGCAAAATTGTGGAGTCGCAACGGCG--TATTACCTTGG 595
||||||||| |||||| || |||||||| |||||||| || | | || |||||| ||||
Sbjct 558 TACATTTAGCAATCAGCTT-TTGCAAAACTGTGGAGTTGC-A-GTCGTATATTACTTTGG 614
Query 596 AAATTTCATGTCATGGAGAA-TAATAGCCTTAATAGGCA-TACTTCCATGCTT-GATACA 652
||||||| |||||||||||| | ||||| |||| || | || ||||||| || ||||||
Sbjct 615 AAATTTCTTGTCATGGAGAACT-TTAGCCATAATCGGTAGTA-TTCCATG-TTGGATACA 671
Query 653 ACTTGTTGGGTTGTTTTTCGTCCCCGAATCTCCAAGATGGTTGGC-AAAAGAAGGTCGTG 711
| || |||| ||||| ||| | || || |||||||||||| |||| |||| |||||||||
Sbjct 672 AGTTATTGGTTTGTTCTTCATACCTGAGTCTCCAAGATGGCTGGCGAAAA-AAGGTCGTG 730
Query 712 ACGAAGAATGTGAGGTTGTTCTTCAGAAA-CTAAGAGG-AGATGAAGCGGATATTGTGAA 769
| |||||||||| | |||||||| ||| ||||||| ||| | | || ||||||
Sbjct 731 ATAAAGAATGTGAAGAAGTTCTTCA-AAAGTTAAGAGGAAGAAG-ATATGACATTGTGCC 788
Query 770 GGAAACTCAAGAAATCTTGATTTCTGTTGAGGCTT-----C----TGCGAATATCAGCAT 820
||| || |||||| |||||| ||||| |||| | | ||||||||| ||
Sbjct 789 TGAAGCTTGCGAAATCAAGATTTCAGTTGAAGCTTCGAAGCAAAATTCGAATATCAATAT 848
Query 821 GCGTAGTCTTTTCAAAAAGAAATATACTCATCAACTTACAATTGGTATAGGTTTGATGCT 880
||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 849 TCGTAGTCTTTTCAAAAAGAGATATGCTCATCAACTTACAATCGGTATAGGTTTGATGCT 908
Query 881 TCTGCAACAGTTAAGTGGGAGTGCAGGATTAGGTTATTACACTGGTAGCG-T--ATTTGA 937
||||||||||||| |||| | ||||||| |||||| |||| || ||| | |||| |
Sbjct 909 TCTGCAACAGTTATGTGGAACTGCAGGAATAGGTTCTTAC---GGAAGCACTCTATTTAA 965
Query 938 TCTTGCCGGATTTCCTTCTCGGATTGGGATGACGGTGTTGTCTATTGTCGTGGTACCAAA 997
|||||||| |||||| ||||||||||||||| |||||||||| || |||| ||||||||
Sbjct 966 ACTTGCCGGGTTTCCTGCTCGGATTGGGATGATGGTGTTGTCTCTTATCGTCGTACCAAA 1025
Query 998 AGCTATATTGGGTCTGATACTTGTGGAACGATGGGGAAGAAGACCGCTTCTTATG 1052
| || || ||||||| || || ||||| |||||||| ||| | || |||||||||
Sbjct 1026 ATCTTTAATGGGTCTAATCCTCGTGGATCGATGGGGGAGACGCCCACTTCTTATG 1080
> Ahg903355 jgi|Araly1|903355|Al_scaffold_0003_483
Length=666
Score = 483 bits (261), Expect = 2e-135
Identities = 318/346 (92%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 78 ATGGAGGGAGAGAATAGTAGCATTGAGAAAGGATTATTATTGATAAGGAAGGAAGAGAGT 137
||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 1 ATGGAGGGAGAGAGTAGTAGCATTGAGAGAGGATTATTATTGGTAAATAAGGAAGAGAGT 60
Query 138 GCAAATACAACTCCATTTCTTGTCTTCACCACTTTCATCATTGTCTCTGCTTCCTTCTCC 197
||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 61 GCAAATACAACTCCACTTCTTGTCTTCACCGCTTTCATCATTGTCTCTGCCTACTTCTCC 120
Query 198 TTTGGCGTTGCCTTAGGACATACTGCTGGTACAATGGCCTCCATTATGGAAGATCTTGAT 257
|| |||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 TTCGGCGTTGCCTTAGGCCACACTGCTGGTACAATGGCTTCCATTATGGAAGAGCTTGAT 180
Query 258 CTTTCTATCACACAATTTTCTGTATTTGGTTCACTATTGACATTTGGAGGAATGATTGGA 317
||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 181 CTTTCTATCGCACAATTTTCTGTATTTGGTTCGCTATTAACGTTTGGAGGAATGATTGGC 240
Query 318 GCACTATTTAGCGCCACAATTGCAGA-TTCATTTGGTTGTAAAATGACTTTGTGGATCAC 376
||| ||||||||||||| |||||||| || | |||| |||||||||||||||||||| |
Sbjct 241 GCAATATTTAGCGCCACGATTGCAGACTT-AGTTGGCCGTAAAATGACTTTGTGGATCGC 299
Query 377 TGAGGTATTCTGCATAAGTGGATGGCTTGCAATTGCACTAGCCAAG 422
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAGGTTTTCTGCATAAGTGGATGGCTTGCAATTGCACTAGCCAAG 345
Score = 130 bits (70), Expect = 3e-29
Identities = 98/111 (88%), Gaps = 3/111 (3%)
Strand=Plus/Plus
Query 1152 ATCGGCATTTGGTTTATGTTTAGGTTGTATCTCTCTTGCATTAGCGTTTGGATTGAAAGG 1211
|||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 411 ATCGGCATTTGGGATATGTTTAGGTTGTATCTCTATTGCATTAGCATTTGGACTGAAAGG 470
Query 1212 TGTCCCTGGGGTTAATGTAAATGTTACTCCCACTTTGGCATTTATAGGAAT 1262
||| ||| || | |||||| ||||||||||||||||||||||||||||
Sbjct 471 TGTTCCTTGGATC---GTAAATTTTACTCCCACTTTGGCATTTATAGGAAT 518
Score = 122 bits (66), Expect = 5e-27
Identities = 66/66 (100%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 989 GGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGGGGAAGAAGACCGCTTCT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGGGGAAGAAGACCGCTTCT 404
Query 1049 TATGGT 1054
||||||
Sbjct 405 TATGGT 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5