BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05170.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477804 jgi|Araly1|477804|fgenesh2_kg.3__505__AT3G05170.1 1840 0.0
Ahg930382 jgi|Araly1|930382|scaffold_302839.1 316 2e-85
Ahg925990 jgi|Araly1|925990|scaffold_201551.1 316 2e-85
> Ahg477804 jgi|Araly1|477804|fgenesh2_kg.3__505__AT3G05170.1
Length=1229
Score = 1840 bits (996), Expect = 0.0
Identities = 1156/1231 (94%), Gaps = 20/1231 (2%)
Strand=Plus/Plus
Query 72 TTCTATTTAATTCGAATTTCAAATTGCCATTTCTCAGATTCCGGGGAAAGaaaaaaaaaC 131
|||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 1 TTCTATTTGATTCGAATTTCAAATTGCAATTTCTCAGATTCCGGGGAAACAAAAAAAACC 60
Query 132 CTAG-AAAAGTGTTTTCTCCG-TTTTCCAATCATCCATGAGTCCGGACAATAAACTGCTT 189
|||| |||| || |||||||| |||| |||||||||||||||| |||||||||||||||
Sbjct 61 CTAGAAAAATTG-TTTCTCCGTTTTTTGAATCATCCATGAGTCCTGACAATAAACTGCTT 119
Query 190 CCGAAGCGGATCATCCTTGTACGGCACGGTGAATCGGAAGGGAATCTCGACACGGCGGCG 249
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 CCGAAGCGGATCATCCTCGTACGGCACGGTGAATCGGAAGGGAATCTCGACACGACGGCG 179
Query 250 TATACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAG 309
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAG 239
Query 310 GAAGCCGGAGCTCGTCTCCACGCTTTGATCTCTTCTAATCCTTCTTCACCGGAGTGGCGT 369
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GAAGCCGGAGCTCGTCTCCACGCTTTGATCTCTTCGAATCCTTCTTCACCGGAGTGGCGT 299
Query 370 GTGTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGG 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTGTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGG 359
Query 430 TCGTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAATGTCGGATTAGGGAACAGGAT 489
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 TCGTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAATGTCGAATTAGGGAACAGGAT 419
Query 490 TTTGGGAATTTTCAGGTTAAAGAGCGAATGAGAGCAACGAAAAAGGTCAGAGAGAGATTT 549
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 420 TTTGGGAATTTCCAGGTTAAAGAGCGAATGAGAGCAACGAAGAAGGTGAGAGAGAGGTTT 479
Query 550 GGCCGCtttttttACCGGTTCCCGGAGGGAGAATCCGCCGCCGATGTCTTCGATCGCGTC 609
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 GGCCGCTTTTTCTACCGGTTCCCGGAGGGAGAATCCGCCGCCGACGTCTTCGATCGCGTC 539
Query 610 TCCAGTTTTCTCGAGTCTCTATGGAGAGACATTGACATGAACAGACTGCACATCAACCCG 669
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 540 TCCAGTTTTCTCGAGTCTCTATGGAGAGACATCGACATGAACAGACTACACATCAACCCG 599
Query 670 TCTCATGAGCTAAACTTTGTGATTGTCTCACATGGCTTAACATCGCGTGTGTTTCTGATG 729
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 600 TCTCATGAGCTAAACTTTGTGATTGTCTCACACGGCTTAACATCGCGTGTCTTTCTGATG 659
Query 730 AAATGGTTTAAGTGGTCAGTGGAACAGTTCGAGGGACTAAACAATCCAGGGAACAGTGAG 789
|||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAATGGTTCAAGTGGACTGTGGAACAGTTCGAGGGACTAAACAATCCAGGGAACAGTGAG 719
Query 790 ATCAGAGTGATGGAATTAGGACAAGGCGGTGATTACAGCTTGGCGATTCATCACACAGAG 849
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 ATCAGAGTAATGGAATTAGGACAAGGCGGTGATTACAGCTTGGCGATTCATCACACGGAG 779
Query 850 GAAGAGTTAGCCACATGGGGACTGTCACCAGAGATGATTGCAGATCAAAAGTGGCGGGCT 909
||||||||| | |||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 780 GAAGAGTTATCGACATGGGGGCTTTCACCAGAGATGATTGCAGATCAAAAGTGGCGGGTT 839
Query 910 AACGCGCATAAAGGCGAATGGAAAGAAGATTGTAAGTGGTATTTTGGTGATTTCTTCGAC 969
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AACGCACATAAAGGCGAATGGAAAGAAGATTGTAAGTGGTATTTTGGTGATTTCTTCGAT 899
Query 970 CATATGGCAGATTCCGATAAAGAGTGCGAGACTGAGGCCACTgaagata--ga-gaagaa 1026
|||||||||||||| |||| ||||| ||||||||||||| |||||| | || ||||||
Sbjct 900 CATATGGCAGATTCGGATAGAGAGTATGAGACTGAGGCCAATGAAGAAAAAGAAGAAGAA 959
Query 1027 gaagaagaagaaga-G--G--G-G--AAAA-GGGTAAATCTGCTAACGAGTTCAGAATAT 1077
|||||||||||||| | | | | |||| |||||||||||||||| ||||||||||||
Sbjct 960 GAAGAAGAAGAAGAAGAAGAAGAGGGAAAAAGGGTAAATCTGCTAACAAGTTCAGAATAT 1019
Query 1078 AGCAATGAGCCAGAGTTATACAATGGACAATGCTGCTGATACTATTTTACAGAACAAAAG 1137
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 1020 AGCAATGAGCCAGAGTTATACAATGGAAAATGCTGCTGATAATTTTTTACAGAACAAAAG 1079
Query 1138 CATACATGAGAAGAAACGTTTAACTAAAGAA-TTCAGAAGATT-TGATTTTGATAAAAAC 1195
|||||||||||||||| |||||||||||||| ||||||| | | |||||||||||| |||
Sbjct 1080 CATACATGAGAAGAAAAGTTTAACTAAAGAAATTCAGAAAAATGTGATTTTGATAATAAC 1139
Query 1196 TTGTACCAATTTACTGATTAAGCTTTCTGGTGTCTTAGTTTGT--AGCTTTTGGTTTGTG 1253
||||||| |||||| || |||||||||||| ||||||||||| |||||||||||||||
Sbjct 1140 TTGTACCG-TTTACTTATGAAGCTTTCTGGTTTCTTAGTTTGTGTAGCTTTTGGTTTGTG 1198
Query 1254 GAAAAGTGTTGTACACATCGTTATAACACCA 1284
|| ||||||||||||||| ||||||||||||
Sbjct 1199 GAGAAGTGTTGTACACATTGTTATAACACCA 1229
> Ahg930382 jgi|Araly1|930382|scaffold_302839.1
Length=382
Score = 316 bits (171), Expect = 2e-85
Identities = 202/217 (93%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 253 ACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAGGAA 312
||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 15 ACAACGATGCCGGATCATAAGATCGAGTTAACTGATTCCGGTTTGCTTCAGGCGCAGGAA 74
Query 313 GCCGGAGCTCGTCTCCACGCTTTGATCT-CTTCTAATCCTTCTTCACCGGAGTGGCGTGT 371
||| |||||||||||||| ||||||| | || ||||||||||||||||||||||||||
Sbjct 75 GCCAGAGCTCGTCTCCACACTTTGAT-TGGATCAAATCCTTCTTCACCGGAGTGGCGTGT 133
Query 372 GTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGGTC 431
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 134 GTACTTCTACGTTTCGCCGTATGATCGGACTCGATCTACTCTCCGGGAGATCGGACGGTC 193
Query 432 GTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAA 468
||||||| |||||||||||||||| |||||||||||
Sbjct 194 GTTCTCGAATCGCCGTGTGATTGGTATTCGCGAAGAA 230
> Ahg925990 jgi|Araly1|925990|scaffold_201551.1
Length=382
Score = 316 bits (171), Expect = 2e-85
Identities = 202/217 (93%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 253 ACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAGGAA 312
||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 15 ACAACGATGCCGGATCATAAGATCGAGTTAACTGATTCCGGTTTGCTTCAGGCGCAGGAA 74
Query 313 GCCGGAGCTCGTCTCCACGCTTTGATCT-CTTCTAATCCTTCTTCACCGGAGTGGCGTGT 371
||| |||||||||||||| ||||||| | || ||||||||||||||||||||||||||
Sbjct 75 GCCAGAGCTCGTCTCCACACTTTGAT-TGGATCAAATCCTTCTTCACCGGAGTGGCGTGT 133
Query 372 GTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGGTC 431
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 134 GTACTTCTACGTTTCGCCGTATGATCGGACTCGATCTACTCTCCGGGAGATCGGACGGTC 193
Query 432 GTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAA 468
||||||| |||||||||||||||| |||||||||||
Sbjct 194 GTTCTCGAATCGCCGTGTGATTGGTATTCGCGAAGAA 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5