BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05190.1
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477806 jgi|Araly1|477806|fgenesh2_kg.3__507__AT3G05190.1 2964 0.0
Ahg489585 jgi|Araly1|489585|fgenesh2_kg.6__2719__AT5G27410.1 1827 0.0
Ahg347417 jgi|Araly1|347417|fgenesh1_pg.C_scaffold_5000809 202 9e-51
Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817 200 3e-50
Ahg351848 jgi|Araly1|351848|fgenesh1_pg.C_scaffold_6002441 132 1e-29
Ahg894829 jgi|Araly1|894829|Al_scaffold_0006_2825 128 2e-28
> Ahg477806 jgi|Araly1|477806|fgenesh2_kg.3__507__AT3G05190.1
Length=1924
Score = 2964 bits (1605), Expect = 0.0
Identities = 1825/1930 (95%), Gaps = 20/1930 (1%)
Strand=Plus/Plus
Query 41 AGAG-TTTGA-CACCGTCATCAATGGCAGAACCGGAGGTGATTCACTCATGGTCTGCACC 98
|||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 6 AGAGTTTTGATCACAGTCGTCAATGGCAGAACCGGAGGTGATTCACTCATGGTCTGCGCC 65
Query 99 AAGATCTCTCAGCACCAGCCTCATGTACTCCTTTGCTCAGAGACTTGACACTGAAGTTGT 158
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 66 AAGATCTCTCAGCACCAGCCTCATGTACTCCTTTGCTCAGAGAGATGACACTGAAGTTGT 125
Query 159 CGACGAGCCGTTGTATGCATCATTTCTTAAAGCTACAGGTTTTGATAGGCCATACAGAGA 218
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 126 CGACGAGCCGTTGTATGCAGCATTTCTTAAAGCTACAGGTGTTGATAGGCCATACAGAGA 185
Query 219 CGAAGTTCTCTCCAAGATGGAGTGCAATGGAGAGAAAGTTGTGAAAGATGTCATATATGG 278
||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 186 CGAGGTTCTCTCCAAGATGGAGTGCAGTGGAGATAAAGTTGTGAAAGATGTCATATATGG 245
Query 279 ATCAGGATCTAAGAAGTACCGGTATTGTAAGCATATCTCGAAGCAGCGGCTTTTCGGTTT 338
||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 246 ATCTGGATCGAAGAAATACCGGTATCGTAAGCATATCTCGAAGCAGCGGCTTTTCGGTTT 305
Query 339 GCCAAGTGAACTGATGAGTAGAGGAAAGCATTTCATATTAATACGAAATCCTCTTAACAT 398
| |||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||
Sbjct 306 GTCAAGTGAACTGATGAGAAAAGGAAAGCACTTCATATTGATACGAAATCCTCTTAACAT 365
Query 399 ATTGCCTTCCTTTGAGAAGGTACACCCTCCATCATTTCTCGAATTAGGCTTGGGGGAATT 458
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 366 ACTGCCTTCCTTTGAGAAGGTACACCCTCCATCGTTTCTCGAATTAGGCTTGGGGGAATT 425
Query 459 AGTGTCGATATACAGTGATCTCTGTCAGATGGGAACACCACCAGCAGTCATCGATGCGGA 518
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 426 AGTGTCGATCTACAGTGATCTCTGTCAGATGGGAATACCACCAGCAGTCATCGATGCGGA 485
Query 519 TGAGCTTCAGCGAGATCCCGAGACTACACTTCGCGGTCTTTGTGATGATTTGGAGATTCC 578
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 486 TGAGCTTCAGCAAGATCCCGAGACTACACTACGCGGTCTTTGTGATGATTTGGAGATTCC 545
Query 579 ATTTCAAGCCTCTATGCTTAAATGGAAGGCTGGTCCTATACCAGAAGATGGAGTATGGGC 638
||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct 546 ATTTCAAGCGTCTATGCGTAAATGGAATGCTGGTCCTATAGCAGAAGATGGAGTATGGGC 605
Query 639 ACCATGGTGGTACAAGAGTGTTCACGAATCAACGGGTTTCTCATCTCCAAAGAAGTATCC 698
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 606 ACCATGGTGGTACAAGAGTGTGCACGAATCAACGGGTTTCTCATCTCCAAAGAAGTATCC 665
Query 699 TCGGACATTCCCTTTGTCGCATTACGATTTGCTGGAGCGAAGTCTACCGCTTTACAACAT 758
||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 666 TCGTTCATTCCCTTTGTCGCACTACGATTTGCTGGAGCAAAGTCTACCGCTTTACAACAT 725
Query 759 TCTCAGGAGCCACGTGAAGCACAGTTCCTCCCTCTTGAGTAGTCCCTTGCCTCCTCCTAG 818
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 726 TCTCAGGAGCCACGTGAAGCACAGCTCCTCCCTCTTGAGTAGTCCCTTGCCTGCTCCTAG 785
Query 819 TCTCCCAGTTCCTGAAAATGCAAAACTTCTTGCATGGGTCGGTGACGAGATTTTGCCTCG 878
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TCTCCCAGTTCCTGAAAACGCAAAACTTCTTGCATGGGTCGGTGACGAGATTTTGCCTCG 845
Query 879 TGAAATGGCAAAGGTTTCTGTTTTTGACTCGGTTGTTCAAGGCGGTGACTCTGTATGGGA 938
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 846 TGAGATGGCAAAGGTTTCTGTTTTTGACTCGGTTGTACAAGGCGGTGACTCGGTATGGGA 905
Query 939 AGGACTTCGGATTTACAAGGGAAAGATATTCAAGCTTGAGGAACATCTAGATCGGTTGTT 998
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 906 AGGACTTCGGATTTACAAGGGAAAGATATTCAAGCTTGAAGAACATCTAGATCGGTTGTT 965
Query 999 TGATTCAGCAAAGGCTCTGGCTTTCGATAATGTTCCAGCGCGTGAAGAGGTAAAAGAAGC 1058
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 966 TGATTCAGCAAAGGCTCTGGCTTTCGAAAATGTTCCAGCGCGTGAAGAGATAAAAGAAGC 1025
Query 1059 AATCTTCAGAACTCTTATAACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCT 1118
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1026 AATCTTCAGAACTCTCATAACCAATGGTATGTTTGACAATACACATATCAGGCTGTCTCT 1085
Query 1119 AACTCGAGGCAAAAAGGTTACTTCTGGAATGAGCCCTGCATATAATCGATATGGGTGCAC 1178
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| || ||
Sbjct 1086 AACTCGAGGCAAAAAGGTAACTTCTGGAATGAGCCCTGCATTTAATCGATATGGATGTAC 1145
Query 1179 TCTT-ATTGTGCTTGCCGAATGGAAGCCTCCGGTATATGACAATGAAGGTGGAATTGTGC 1237
| || || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1146 T-TTAATCGTGCTTGCGGAATGGAAGCCTCCGGTGTATGACAATGATGGTGGAATTGTGC 1204
Query 1238 TGGTGACTGCAACCACACGCCGCAATTCGCCTAATAATTTGGATTCCAAGATTCATCACA 1297
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1205 TGGTGACCGCAACCACACGTCGCAACTCGCCTAATAATTTGGATTCCAAGATTCATCACA 1264
Query 1298 ACAACCTTCTCAATAACATACTAGCAAAGATTGAAAGTAACAACACGAATGCTGCTGACG 1357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1265 ACAACCTTCTCAATAACATACTAGCAAAGATTGAAAGTAACAACACGAATGCCGCTGACG 1324
Query 1358 CCATTATGCTTGACAAAGATGGTTATGTGTCTGAAACCAATGCAACCAACATTTTCATGG 1417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CCATTATGCTTGACAAGGATGGTTATGTGTCTGAAACCAATGCAACCAACATTTTCATGG 1384
Query 1418 TGAAGAAAGGCTGTGTACTTACTCCTCACGCAGATTACTGTCTCCCTGGCATAACCAGAG 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TGAAGAAAGGCTGTGTACTTACTCCTCACGCAGATTACTGTCTCCCTGGCATAACCAGAG 1444
Query 1478 CAACTGTAATGGAACTTGTGGTGAAAGAGAACTTCATCTTAGAAGAAAGAAGAATCAGTC 1537
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 CTACCGTCATGGAACTTGTGGTGAAAGAGAACTTCATCTTAGAAGAAAGAAGAATCAGTC 1504
Query 1538 TCTCCGAATTCCATACAGCTAATGAGGTATGGACAACAGGAACTATGGGAGAACTAAGCC 1597
|||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 1505 TCTCCGAATTTCATACAGCCGATGAGGTATGGACAACTGGAACTATGGGGGAACTAAGCC 1564
Query 1598 CGGTTGTGAAAATCGATGGGCGTGTGATTGGTGACGGCAAAGTTGGACCGGTAACGAGAA 1657
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 1565 CGGTTGTGAAAATCGATGGACGCGTGATTGGTGACGGAAAAGTTGGACCGGTAACGAGAA 1624
Query 1658 CACTGCAAAACGCTTACAAGAAACTGACAGAGGATTCAGGTGTGCCGATACCTACTTATC 1717
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1625 CACTGCAAAACGCTTACAAGAAACTGACAGAGGATTCAGGTGTGCCAATACCTACTTACC 1684
Query 1718 AAGAACCCTGAAATACAAAACCAGAGGTGATACCAATGTTGTAGGCTTTGTAGCCTTCTT 1777
||||||||||||||||||||| ||||| ||| |||||||||||| | | |||||
Sbjct 1685 AAGAACCCTGAAATACAAAACAAGAGGGGATGCCAATGTTGTAG-C-------C-TTCTT 1735
Query 1778 GTAGTCGTTTCTTCTTATCTTGGCAC-AAAACGGCGAGGAGTTTTATGCATGGTGATGGA 1836
||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
Sbjct 1736 ATAGTCGTTTCTTCTTATCTTGGCACCAAAACGGCGAGTAGTTT-ATGCATGGCGATGTA 1794
Query 1837 AAACTGTGTGTAGTTAAGCTTGTCGAGTAGACTTAAATCAAAGTCAGCATTTGCTTATTG 1896
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1795 AAACTGTGTGTAGTCAAGCTTGTCGAGTAGACTTAAATCAAAGTCAGCATTTGCTTGTTT 1854
Query 1897 GACC-AGACGTTAGAAGTAAGACCATAA-A--TAAAGCCACCACTCGAGCTTTGATTCTT 1952
|||| | | || ||||||| |||||||| | |||||||||||||||||| |||||||||
Sbjct 1855 GACCCAAA-GTGAGAAGTATGACCATAATAAATAAAGCCACCACTCGAGCGTTGATTCTT 1913
Query 1953 TTCCTTTTCT 1962
||||||||||
Sbjct 1914 TTCCTTTTCT 1923
> Ahg489585 jgi|Araly1|489585|fgenesh2_kg.6__2719__AT5G27410.1
Length=1982
Score = 1827 bits (989), Expect = 0.0
Identities = 1455/1678 (87%), Gaps = 40/1678 (2%)
Strand=Plus/Plus
Query 72 GGAGGTGATTCACTCATGGTCTGCACCAAGATCTCTCAGCACCAGC-CTCATGTACTCCT 130
||||||||||||| |||||||||| |||||||| |||||||||| | || |||||||||
Sbjct 144 GGAGGTGATTCACGCATGGTCTGCTCCAAGATCACTCAGCACCA-CTCTTTTGTACTCCT 202
Query 131 TTGCTCAGAGACTTGACACTGAAGTTGTCGACGAGCCGTTGTATGCAT-CATTTCTTAAA 189
|||| |||||| ||||| |||||| |||||||||| || || || | | ||| | ||
Sbjct 203 TTGCCCAGAGAGATGACATTGAAGTCCTCGACGAGCCATTATACGC-TGC-GTTCCTCAA 260
Query 190 G-CTACAGGTTTTGATAGGCCATACAGAGACGAAG-TTCTCTCCAAGATGGAGTGCAATG 247
| |||| ||| ||||||||||||||||||| | || ||||||| || |||||||| |||
Sbjct 261 GTCTACGGGTGTTGATAGGCCATACAGAGATG-AGCTTCTCTCTAAAATGGAGTGTGATG 319
Query 248 GAGAGAAA-GTTGTGAAAGATGTCATATATGGAT-CAGGATCTAAGAAGTACCGGTATTG 305
|||| ||| || ||||| ||| |||| ||||| | ||||| ||||| || ||| |||
Sbjct 320 GAGA-AAAGGTGGTGAAGGATATCATTTATGG-TCCAGGAAAGAAGAAATATAGGTTTTG 377
Query 306 TAAGCATATCTCGAAGCAGCGGCTT-TTCGGTTTGCCAAGTGAACTGATGAGTAGAGGAA 364
||||||||| ||||| ||||| ||| || |||||||| |||||||| ||||||| |||||
Sbjct 378 TAAGCATATATCGAAACAGCGACTTCTT-GGTTTGCCGAGTGAACTAATGAGTAAAGGAA 436
Query 365 AGCA-TTTCATATTAATACGAAATCCTCTTAACATATTGCCTTCCTTTGAGAAGGTACAC 423
|||| ||| ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 437 AGCACTTT-ATATTGATACGCAATCCCCTTAACATATTGCCTTCTTTTGAGAAGGTACAC 495
Query 424 CCTCCATCATTTCTCGAATTAGGCTTGGGGGAATTAGTGTCGATATACAGTGATCTCTGT 483
||| |||| |||| |||||| || ||||| || ||||| |||||||||||||||||||||
Sbjct 496 CCTTCATCGTTTCACGAATTGGGATTGGGAGAGTTAGTATCGATATACAGTGATCTCTGT 555
Query 484 CAGATGGGAACACCACCAGCAGTCATCGATGCGGATGAGCTTCAGCGAGATCCCGAGACT 543
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |
Sbjct 556 CAGATGGGAACACCACCAGCAATCATCGATGCAGATGAGCTCCAGCGAGATCCCGAGGTT 615
Query 544 ACACTTCGCGGTCTTTGTGATGATTTGGAGATTCCATTTCAAGCCTCTATGCTTAAATGG 603
||||| ||| ||||||| ||||| || ||||| || ||||||||||||||||||||||||
Sbjct 616 ACACTACGCAGTCTTTGCGATGACTTAGAGATCCCGTTTCAAGCCTCTATGCTTAAATGG 675
Query 604 AAGGCTGGTCCTATACCAGAAGATGGAGTATGGGCACCATGGTGGTACAAGAGTGTTCAC 663
|||||||||||||||||||||||||| | ||||| |||||||||||||||| | |||||
Sbjct 676 GAGGCTGGTCCTATACCAGAAGATGGACTTTGGGCTCCATGGTGGTACAAGACTCTTCAC 735
Query 664 GAATCAAC-GGGTTTCTCATCTCCAAAGAAGTATCCTCGGACATTCCCTTT-GTCGCATT 721
||||||| |||||| || ||||| |||||||| |||| ||| |||||||| | |||||
Sbjct 736 AAATCAACGGGGTTT-TCTTCTCCGAAGAAGTACCCTCAGACTTTCCCTTTAAT-GCATT 793
Query 722 ACGATTTGCTGGAGCGAA-GTCTACCGCTTTACAACATTCTCAGGAGCCACGTGAAGCAC 780
||||||||||||||| || || ||||||| ||||||||||||||| ||||||||||||||
Sbjct 794 ACGATTTGCTGGAGC-AATGTTTACCGCTATACAACATTCTCAGGCGCCACGTGAAGCAC 852
Query 781 -AGTTCCTCCCTCTTGAGTAGTCCCTTGCCTCCTCCTAGTCTCCCAGTTCCTGAAAATGC 839
|| || || ||||||| || |||| ||||||| |||||||| ||||||||||||||
Sbjct 853 AAG-TCATCTCTCTTGACCAGAACCTTAACTCCTCCCAGTCTCCCGGTTCCTGAAAATGC 911
Query 840 AAAACTTCTTGCATGGGTCGGTGACGAGATTTTGCCTCGTGAAATGGCAAAGGTTTCTGT 899
||||||||||| ||||| ||||| |||||| | || ||||| |||||||||||||||||
Sbjct 912 TAAACTTCTTGCTTGGGTTGGTGATGAGATTGTACCACGTGAGATGGCAAAGGTTTCTGT 971
Query 900 TTTTGACTCGGTTGTTCAAGGCGGTGACTCTGTATGGGAAGGACTTCGGAT-T-TACAAG 957
|||||||||||| || ||||| |||||||||||||||||||| ||||| || | || |||
Sbjct 972 TTTTGACTCGGTCGTGCAAGGTGGTGACTCTGTATGGGAAGGTCTTCGAATATATA-AAG 1030
Query 958 GGAAAGATATTCAAGCTTGAGGAACATCTAGATCGGTTGTTTGATTCAGCAAAGGCTCTG 1017
| |||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 1031 GAAAAG-TATTCAAGCTTGAAGAACATCTAGACCGGTTGTCTGATTCAGCAAAGGCTCTG 1089
Query 1018 GCTTTCGATAATGTTCCAGCGCGTGAAGAGGTAAAAGAAGCAATCTTCAGAACTCTTATA 1077
|||||| | ||||| ||| | || || ||| |||||||||| |||||||||||||| |||
Sbjct 1090 GCTTTCAACAATGTCCCAACCCGCGAGGAGATAAAAGAAGCCATCTTCAGAACTCTCATA 1149
Query 1078 ACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCTAACTCGAGGCAAAAAGGTT 1137
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1150 ACCAATGGGATGTTTGACAATACACATATAAGACTGTCTCTAACTCGAGGCAAAAAGGTC 1209
Query 1138 ACTTCTGGAATGAGCCCTGCATATAATCGATATGGGTGCACTCTT-ATTGTGCTTGCCGA 1196
|||||||||||||||||||||| ||| || ||||| || ||| || || |||||||||||
Sbjct 1210 ACTTCTGGAATGAGCCCTGCATTTAACCGTTATGGATGTACT-TTGATCGTGCTTGCCGA 1268
Query 1197 ATGGAAGCCTCCGGTATATGACAATGAAGGTGGAATTGTGCTGGTGACTGCAACCACACG 1256
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 1269 ATGGAAGCCTCCGGTATATGACAATGATGGCGGAATTGTGCTAGTGACTGCAACTACACG 1328
Query 1257 CCGCAATTCGCCTAATAATTTGGATTCCAAGATTCATCACAACAACCTTCTCAATAACAT 1316
||||||||| || |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1329 CCGCAATTCACCCAATAATTTAGATTCCAAGATTCATCACAACAACCTCCTCAATAATAT 1388
Query 1317 ACTAGCAAAGATTGAAAGTAACAACACGAATGCT-GCTGACGCCATTATGCTTGACAAAG 1375
||| |||||||||||||| ||||| | || | | | ||| || || ||||||||||| |
Sbjct 1389 ACTTGCAAAGATTGAAAGCAACAATGCCAAAG-TCGATGATGCAATCATGCTTGACAAGG 1447
Query 1376 ATGG-TTATGTGTCTGAAACCAATGCAACCAACATTTTCATGGTGAAGAAAGGCTGTGTA 1434
|||| || |||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1448 ATGGATT-TGTGTCTGAAACCAATGCAACCAACATTTTCATGGTGAAGAAAGACCGAGTA 1506
Query 1435 CTTACTCCTCACGCAGATTACTGTCTCCCTGGCATAA-CCAGAGCAACTGTAATGGAACT 1493
|| || |||||||||||||| |||||||| ||||| | || |||| ||||| ||||||||
Sbjct 1507 CTCACCCCTCACGCAGATTATTGTCTCCCGGGCATTAGCC-GAGCTACTGTTATGGAACT 1565
Query 1494 TGTGGTGAAAGAGAACTTCATCTTAGAAGAAAGAAGAATCAGTCTC-TCCGAATTCCATA 1552
|||||||||||||||||||||||||||||| | ||||| || || || ||||||||||
Sbjct 1566 GGTGGTGAAAGAGAACTTCATCTTAGAAGAACGTAGAATTAG-CTTGTCGGAATTCCATA 1624
Query 1553 CAGCTAATGAGGTATGGACAACAGGAACTATGGGAGAACTAAGCCCGGTTGTGAAAATCG 1612
||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1625 CAGCTGATGAGGTATGGACTACAGGAACTATGGGAGAACTCAGCCCGGTTGTGAAAATTG 1684
Query 1613 ATGGGCGTGTGATTGGTGACGGCAAAGTTGGACCGGTAACGAGAACACTGCAAAACGCTT 1672
||||||||||||| ||||| || ||||| ||||||||||| |||| |||||||| ||||
Sbjct 1685 ATGGGCGTGTGATCGGTGAAGGAAAAGTAGGACCGGTAACAAGAAGACTGCAAAGTGCTT 1744
Query 1673 ACAAGAAACTGACAGA-GGATTCAGGTGTGCCGATACCTACTTATCAAGAACCCTGAA 1729
||||||||||||| || || |||||| || || ||||||||||| |||||||| ||||
Sbjct 1745 ACAAGAAACTGACGGATGG-TTCAGGCGTCCCAATACCTACTTACCAAGAACCTTGAA 1801
> Ahg347417 jgi|Araly1|347417|fgenesh1_pg.C_scaffold_5000809
Length=336
Score = 202 bits (109), Expect = 9e-51
Identities = 122/128 (95%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 444 AGGCTT-GGGGGAATTAGTGTCGATATACAGTGATCTCTGTCAGATGGGAACACCACCAG 502
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 134 AGGCTTGGGGGGAATTAGTGTCGATATACAGTGATCTCTGTCACATGGGAACACCACCAG 193
Query 503 CAGTCATCGATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTTCGCGGTCTTTGTG 562
| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 194 CTGTCATCAATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTACACGGTCTTTGTG 253
Query 563 ATGATTTG 570
||||||||
Sbjct 254 ATGATTTG 261
> Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817
Length=1389
Score = 200 bits (108), Expect = 3e-50
Identities = 121/127 (95%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 445 GGCTTGGG-GGAATTAGTGTCGATATACAGTGATCTCTGTCAGATGGGAACACCACCAGC 503
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1092 GGCTTGGGAGGAATTAGTGTCGATATACAGTGATCTCTGTCACATGGGAACACCACCATC 1151
Query 504 AGTCATCGATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTTCGCGGTCTTTGTGA 563
||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1152 AGTCATCAATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTACACGGTCTTTGTGA 1211
Query 564 TGATTTG 570
|||||||
Sbjct 1212 TGATTTG 1218
> Ahg351848 jgi|Araly1|351848|fgenesh1_pg.C_scaffold_6002441
Length=540
Score = 132 bits (71), Expect = 1e-29
Identities = 91/100 (91%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 602 GGAAGGCTGGTCCTATACCAGAAGATGGAGTATGGGCACCATGGTGGTACAAGAGTGTTC 661
|||| | |||| ||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 246 GGAA-GTTGGTACTATACC---AGATGGAATATGGGCACCATGGTGGTACAAGAGTGTGC 301
Query 662 ACGAATCAACGGGTTTCTCATCTCCAAAGAAGTATCCTCG 701
|||||||||| |||||||||||||||||||||||||||||
Sbjct 302 ACGAATCAACAGGTTTCTCATCTCCAAAGAAGTATCCTCG 341
Score = 63.9 bits (34), Expect = 5e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1226 GTGGAATTGTGCTGGTGACTGCAACCACACGCCGCAATTCGCC 1268
|||||||||||||||||||||||||||| ||||| || |||||
Sbjct 429 GTGGAATTGTGCTGGTGACTGCAACCACGCGCCGAAACTCGCC 471
> Ahg894829 jgi|Araly1|894829|Al_scaffold_0006_2825
Length=309
Score = 128 bits (69), Expect = 2e-28
Identities = 108/125 (86%), Gaps = 10/125 (8%)
Strand=Plus/Plus
Query 1496 TGGTGAAAGAGAACTTCATCTTAGAAGAAAGAAGAATCAGTCTCTCCGAATTCCATACAG 1555
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TGGCGAAACAGAACTTCATCTTAGAAGAAAGAAGAATCAGTCTCTCCGAATTCCATACAG 241
Query 1556 CTAATGAGGT------A--T--GGACAACAGGAACTATGGGAGAACTAAGCCCGGTTGTG 1605
| ||||||| | | |||||||| ||||||| | |||||||||||||||||||
Sbjct 242 TTGATGAGGTTCTTTCAGGTATGGACAACATGAACTATAGCAGAACTAAGCCCGGTTGTG 301
Query 1606 AAAAT 1610
|||||
Sbjct 302 AAAAT 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80789409645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5