BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05210.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477808 jgi|Araly1|477808|fgenesh2_kg.3__509__AT3G05210.1 2010 0.0
> Ahg477808 jgi|Araly1|477808|fgenesh2_kg.3__509__AT3G05210.1
Length=1376
Score = 2010 bits (1088), Expect = 0.0
Identities = 1263/1346 (94%), Gaps = 18/1346 (1%)
Strand=Plus/Plus
Query 5 AAACAGAGTCCGGGAAAAGAAAA---AAGAG-CTCTC-G-GAGATTCAATCACTCATGGC 58
||| ||||||||||||||||||| ||||| | || | ||||||| ||||||||||||
Sbjct 1 AAAAAGAGTCCGGGAAAAGAAAAGGGAAGAGTTTTTCAGAGAGATTCGATCACTCATGGC 60
Query 59 GAACGAAGACGACGACGGTGAGAAATCCAGAAGTCTGCACCAACAGATTGCTAGAAAACC 118
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAACGAAGACGACGACGGTGAGAAATCCAGAAGTCTGCACCAACAGATTGCTAAAAAACC 120
Query 119 CAAAACCCAGATCGTGATTGGTGTGCCATCGTACCAGGAAGTTTTGGAAAGCTCACAGAC 178
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 121 CAAAACCCAGATCGTAATTGGTGTGCCATCGTACCAGGAAGTTATAGAAAGCTCACAGAC 180
Query 179 GAAGTCCACGCCTCCATCTCTCTTCAAGCCTTCCCAGAGTTTCTCTCAGGCTTTCGCTTT 238
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 181 GAAGTCCACGCCCCCATCTCTCTTCAAGCCTTCCCAAAGTTTCTCTCAGGCATTCGCTTT 240
Query 239 CGTCAAGTCGTCCGACGTCTActctcctcctcc-tccttcctccGCAGCCGCCTCTTCTT 297
|||||| |||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct 241 CGTCAAATCGTCCGACGTCTACTCTCCTCCTCCGT-CTTCCTCCGCCGCCTCCTCTTCTT 299
Query 298 CTCAGCCGTCGGGCGCTTCTCAGGTGCCCCACAGTTCAAGCCAAACGCATCAAACTGATG 357
| |||||| ||||||||||||||||| || ||||||||||||| ||| |||||| ||||
Sbjct 300 CGCAGCCGCCGGGCGCTTCTCAGGTG--CC-CAGTTCAAGCCAACCGCTTCAAACCGATG 356
Query 358 GAGCCTCATCTTCTTCTACTCCTGTAGCCACTGGCTCTGTACCATCAAACACAACTCAAA 417
| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 357 GTGCCTCATCTTCTTCTACTCCTGTAGCTACTGGCTCTTTACCATCAAGCACAACTCAAA 416
Query 418 ATCGTAACGCTATTCTCGTTAGCCATCGACAGAAAGGAAACCCGCTTCTTAAACATATCA 477
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 417 CTCGTAACGCAATCCTCGTTAGCCATAGACAGAAAGGAAACCCGCTTCTTAAACATATCA 476
Query 478 GGAATGTGAAATGGGTTTTCTCAGATATCATTCCAGATTACGTGCTTGGTCAAAACTCTT 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 GGAATGTGAAATGGGTTTTCTCAGATATCATTCCAGATTACGTGCTTGGTCAAAGCTCTT 536
Query 538 GCGCTTTGTATTTAAGCTTGCGGTATCATCTCCTACATCCGGATTACCTCTATTTCCGCA 597
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 GCGCTTTGTATTTAAGCTTGCGGTATCATCTGCTACATCCGGATTACCTCTATTTCCGCA 596
Query 598 TTAGGGAACTACAAAAGAATTTCAAGCTAAGTGTTGTTCTTTGCCATGTCGACGTGGAAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTAGGGAACTACAAAAGAATTTCAAGCTAAGTGTTGTTCTTTGCCATGTCGACGTGGAAG 656
Query 658 ATACGGTGAAACCGTTGCTTGAAGTCACAAAAACCGCTCTACTTCATGATTGCACTCTAT 717
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 ATACAGTGAAACCGTTGCTTGAAGTCACGAAAACCGCTCTACTTCATGATTGCACTCTAT 716
Query 718 TGTGTGCCTGGAGCATGACAGAATGTGCCCGTTATTTGGAAACGATAAAAGTCTATGAAA 777
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGTGCGCCTGGAGCATGACGGAATGTGCCCGTTATTTGGAAACGATAAAAGTCTATGAAA 776
Query 778 ACAAACCTGCAGATCTCATCCAAGGCCAAATGGATACAGATTACCTTTCACGGCTAAACC 837
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 777 ACAAACCCGCAGATCTCATCCAAGGCCAAATGGATACAGATTATCTTTCACGGCTAAACC 836
Query 838 ATTCTCTTACAAGCATTCGACATGTAAACAAGAGCGATGTAGTTACACTTGGTTCTACAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATTCTCTTACAAGCATTCGACATGTAAACAAGAGCGATGTAGTTACACTTGGTTCTACAT 896
Query 898 TCGGGTCTCTTGCTCATATAATCGATGCATCCATGGAAGATTTAGCACGTTGTCCCGGGA 957
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 TCGGGTCTCTTTCCCATATAATCGATGCATCCATGGAAGATTTAGCACGTTGTCCGGGGA 956
Query 958 TTGGCGAACGTAAGGTGAAGCGGTTGTATGATACATTCCACGAGCCTTTCAAGCGTGCAA 1017
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTGGCGAACGTAAGGTTAAGCGGTTGTATGATACATTCCACGAGCCTTTCAAGCGTGCAA 1016
Query 1018 CTTCGAGCTACCCGTCTGTTGTAGAACCACCAATCCCGGAAGCTCCAGTTGAGAAGGATG 1077
|||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1017 CTTCAAGCTACCCGTCTGTTGTAGAACCAACAATCCCGGAAGCTCCAGTTCAGAAGAATG 1076
Query 1078 TGAACTCAGAGGAACCTGTTGAAGAAGACGAGGATTTTGTGGAGGACTCGAGAAAACGCA 1137
||| |||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1077 TGAGCTCAAAGGAACCTCTTGTAGAAGAGGAGGATTTTGTGGAGGACTCGAGAAAACGCA 1136
Query 1138 AGAAGAAGGAGCCCGAGCCCGAGAAAACTGTGAAGACCGCACTCTCTGCTGTTTTTGCTC 1197
||||||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||
Sbjct 1137 AGAAGAAGGAGCCCGAG----A-AAA-CTGTGAAGACCGCGCTCTCAGCTGTTTTTGCTC 1190
Query 1198 GTTACTCTGATAGACTTAGCAAGAAAAAGGAGAAACAGAAGGAGAAAGATACAACAACGG 1257
|||||||||||| ||||||||||||||| ||||| || |||||||||||| ||||||| |
Sbjct 1191 GTTACTCTGATAAACTTAGCAAGAAAAAAGAGAAGCAAAAGGAGAAAGATGCAACAACCG 1250
Query 1258 CGTCAGATGCTGAAACCCACCAAAATTAACACGGTTTTGTTCCTTGGGTAAGGCCATGGT 1317
||||||| |||||| ||||||| |||||||| ||| ||||| ||||| |||||||||||
Sbjct 1251 AGTCAGATACTGAAATCCACCAAGATTAACACAGTTCTGTTCATTGGGCAAGGCCATGGT 1310
Query 1318 GACCACATTCCTAGGATTGTAACTTA 1343
||||||||||||| |||||||||||
Sbjct 1311 GACCACATTCCTAA-ATTGTAACTTA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5