BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05220.1
Length=2096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928106 jgi|Araly1|928106|scaffold_300563.1 1081 0.0
> Ahg928106 jgi|Araly1|928106|scaffold_300563.1
Length=1025
Score = 1081 bits (585), Expect = 0.0
Identities = 723/785 (92%), Gaps = 28/785 (4%)
Strand=Plus/Plus
Query 1186 GATGCCAAAAGTGGT-GGTGGTGGCCTTCTAGGGTTTTTCAAAAAGGGTAAAAGTGGGAA 1244
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 262 GATGCCAAAAGTAGTGGGTGG-GGCCTTCTAGGGTTTTTCAAAAAGGGTAAAAGTGGAAA 320
Query 1245 CGGAGATGAGAAGAAGAGCGCTGGGAAGAAAGATGGCCATGGGGGTAATAAGGTCAAATC 1304
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 321 AGGAGATGAGAAGAAGGGCGCTGGGAAGAAAGATGGTCATGGGGGTAATAAGGTCAAATC 380
Query 1305 TCATGGTGGGGGAGGAGGAGTTCAGCATTATGATAGTGGGCCTAAAAAAGGTGGTGGTGG 1364
|| | |||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 381 TCCTAGTGGGGGAGGAGGAGTTCAGCATTATGATAGTGGGCCTAAAAAAGGGGGAGGT-G 439
Query 1365 GA-CCAAAGGAGGAGGCCATGGGGGCCTTGACATTGATGAGCTCATGAAACAC---AGCA 1420
|| |||||||||||| |||||| || ||||||||||||||||||||||||||| || |
Sbjct 440 GATCCAAAGGAGGAGCCCATGGAGGTCTTGACATTGATGAGCTCATGAAACACAGTAGTA 499
Query 1421 AaggaggaggaggaggaggTAACAAGGGCAATCATAATCATAGCGCCAAAGGGATTGGTG 1480
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||
Sbjct 500 AAGGAGGAGGAGGAGGAGGTAACAAGGGCAATCATAATCATAGCGCAAAAGGTA-T--TG 556
Query 1481 GTGGCCCAATGGGTCCAGGCGGTCCGATGGGTCCAGGCGGTCCGATGGGTCAAGGTGGTC 1540
||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 557 GTGGCCCAATGGGTCCAGGTGGTCCAATGGGTCAAGGCGGTCCGATGGGTCCAGGTGGTC 616
Query 1541 CGATGGGTATGATGGGTCCAGGTGGTCCGATGAGTATGATGGGTCCAGGCGGTCCTATGG 1600
| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 617 C---------GATGGGTCCAGGCGGTCCGATGGGTATGATGGGTCCAGGCGGTCCTATGG 667
Query 1601 GTCCAATGGGTGGCCAAGGCGGCTCTTACCCAGCGGTTCAAGGCTTGCCAATGAGTGGAG 1660
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 668 GTCCAATGGGTGGCCAAGGCGGCTCTTACCAAGCGGTTCAAGGCTTGCCGATGAGTGGAG 727
Query 1661 GTGGAGGATATTATCCAGGGCCGCCTCAGGCAAGTCAgcaaatgaaccaacaacaatata 1720
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 728 GTGGAGGATATTATCCGGGGCCGCCTCAGGCAAGTCATCAAATGAACCAACAACAATATA 787
Query 1721 tgcaaatgatgatgaaccaacagcagcaacaacaacaacaacaacaaGCTGTAGCTCATG 1780
|||||||||||||||| | |||||| ||||||||||||||||||| ||||||||
Sbjct 788 TGCAAATGATGATGAA-C--CAGCAG------CAACAACAACAACAAGCTGCAGCTCATG 838
Query 1781 GTGGCTATGGCGGTGGTCACGGTGGCGACATGTACCATCCGATGATGTACGCTCGGCCTT 1840
| |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 839 GAGGCTATGGTGGTGGTCACGGTGGAGACATGTACCATCCGATGATGTACGCTAGGCCTT 898
Query 1841 ATCCTGCAGTTAATTATGCTCACCCTCCACCAATGCCGCCTCCTCACTCGGATTCTTATA 1900
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 899 ATCCTGCAGTTAATTATGCTCACCCGCCACCGATGCCGCCTCCTCACTCGGATTCTTATA 958
Query 1901 CTCATATGTTCAGCGATGAGAATCCAGGTAGTTGTAGTATTATGTGATCATCTTTTGTAA 1960
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 959 CTCATATGTTCAGCGATGAGAATCCAGGTAGTTGTAGTATCATGTGATCATCTTGTGTAA 1018
Query 1961 TGTTA 1965
|||||
Sbjct 1019 TGTTA 1023
Score = 422 bits (228), Expect = 7e-117
Identities = 249/259 (96%), Gaps = 1/259 (0%)
Strand=Plus/Plus
Query 192 ACACACAAATCTAAGAGAAGTTATGAATAAACAAGATGTTATGAAACTTCAGACTTGTGT 251
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACACAAATCCAAGAG-AGTTATGAATAAACAAGATGTTATGAAACTTCAGACTTGTGT 59
Query 252 TCTGAAAGTGAACGTACACTGTGAAGGGTGTAAGCATAAAGTGAAGAAACAATTGCAGAA 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTGAAAGTGAACGTACACTGTGAAGGGTGTAAGCATAAAGTGAAGAAACAATTGCAGAA 119
Query 312 AATCGAAGGTGTTTACTCTGTAAAAGCAGATGTAGAACAGGGGAGAGTTACTGTTACAGG 371
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 120 AATCGAAGGCGTTTACTCTGTCAAAGCAGATGTAGAACAGGGGAGAGTCACTGTTACAGG 179
Query 372 GAACATTGACCCAGCTCTTCTGGTTAAGAAACTTAGCAAATCAGGCAAACATGCCGAGAT 431
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 CAACGTTGACCCAGCTCTTCTGGTTAAGAAACTGAGCAAATCAGGCAAACATGCCGAGAT 239
Query 432 CTTAGGCGGTGGTGGAGGA 450
||| |||||||| ||||||
Sbjct 240 CTTGGGCGGTGGCGGAGGA 258
Score = 73.1 bits (39), Expect = 8e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1489 ATGGGTCCAGGCGGTCCGATGGGTCCAGGCGGTCCGATGGGT 1530
||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 ATGGGTCCAGGTGGTCCGATGGGTCCAGGCGGTCCGATGGGT 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78846807150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5