BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05230.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477810 jgi|Araly1|477810|fgenesh2_kg.3__511__AT3G05230.1 1155 0.0
> Ahg477810 jgi|Araly1|477810|fgenesh2_kg.3__511__AT3G05230.1
Length=802
Score = 1155 bits (625), Expect = 0.0
Identities = 761/823 (92%), Gaps = 24/823 (3%)
Strand=Plus/Plus
Query 14 aaaaaaaaaCGCTCGtcttcttcttcttcttcttcttatattacttcttcCTCC-CACAC 72
||||| |||||||||||||| |||||||||||||||| |||| ||||||||||| |||||
Sbjct 1 AAAAAGAAACGCTCGTCTTCGTCTTCTTCTTCTTCTTCTATTGCTTCTTCCTCCGCACAC 60
Query 73 -AGACAAATTTTGTAACGAAGACGGGATCGCGATAAGATCACGGTGATCGAAAAGCCCTA 131
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 61 AAGACAAATTTTGTAACGAAGACGGGATCGCGATAAGATCCCGGTGATCGAAAAGCCATA 120
Query 132 AGAAGT-ATTTTCAAGGGAAAGGGACTTAAAGATGCATACTTTTGGTTACAGAGCAAATG 190
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGTAATCGTAAAGGGAAAGGGACTTAAAGATGCATACTTTTGGTTACAGAGCAAATG 180
Query 191 CTCTGCTCACTTTCGCAGTCACGGCTCTTGCTTTCATTTGCGCAATCGCGTCCTTCTCAG 250
|||||||||| ||||||||||| || ||||| ||||||||||||||||| || ||||| |
Sbjct 181 CTCTGCTCACGTTCGCAGTCACTGCGCTTGCATTCATTTGCGCAATCGCTTCTTTCTCGG 240
Query 251 ACAAATTCAGCAACCAAAATCCTTCTGCTGAGATCCAGATACTTAATATCAATCGGTTTA 310
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 241 ACAAATTCAGCAACCAAAATCCCTCTGCTGAGATCCAGATACTTAATATTAATCGGTTTA 300
Query 311 AGAAGCAATCTCATGGTAACGATGAGGTCAGCTTGACACTGGACATATCAGCAGACTTGC 370
|||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||
Sbjct 301 AGAAGCAATCTCATGGCAATGATGAGGTCAGCTTGACATTGGATATATCAGCAGACTTGC 360
Query 371 AATCACTTTTTACTTGGAACACCAAACAGGTTTTTGTTTTCGTAGCAGCAGAGTATGAAA 430
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 AGTCACTATTTACTTGGAACACCAAACAGGTTTTTGTTTTCGTAGCAGCCGAGTATGAAA 420
Query 431 CCCCAAAGAATTCCCTGAATCAGGTTTCTCTATGGGATGCCATTATTCCTGCCAAGGAAC 490
|||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 421 CCCCGAAGAATTCCCTGAATCAGGTTTCTTTATGGGATGCGATTATCCCTGCCAAGGAAC 480
Query 491 ATGCCAAATTCCGGATTCAAGTCTCAAACAAGTACCGTTTCATCGATCAGGGACAGAATC 550
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 ATGCCAAATTCCGGATTCAAGTCTCAAACAAGTATCGTTTCATCGATCAGGGACAGAATC 540
Query 551 TTCGGGGCAAAGACTTCAACTTGACATTACACTGGCATGTCATGCCCAAGACCGGGAAGA 610
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCGGGGAAAAGAATTCAACTTGACATTACACTGGCATGTCATGCCCAAGACCGGGAAGA 600
Query 611 TGTTTGCTGACAAGATAGTCTTGCCTGGTTACAGTTTACCAGATGCATACAGATGATGAA 670
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTTTGCTGACAAGATAGTCATGCCTGGTTACAGTTTACCAGATGCATACAGATGATGAA 660
Query 671 GATTGAATAAAACATCAAACCTAGTCCAAGACTTTTTGTATTTCAGTTTTCTGAAAAGTT 730
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATTGAATAAAACATCAAACATAGTCCAAGACTTTTTGTATTTCAGTTTTCTGAAAAGTT 720
Query 731 TTAGACTTTCTTTTATTCCAAAGAAAACTAATTCAAAAGTACTATTGTTCTCTTAGAATC 790
||| | | | |||||||||||||| |||||||||||| |||||
Sbjct 721 TTA-A---------A----A-------CTAATTCAAAAGTATTATTGTTCTCTTGGAATC 759
Query 791 AAACAAAACTATTCTTTTTAGTGATCTTAATTAGTTGTTAATG 833
||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 760 AAACAAAACAATTCTTTTAAGTGATCTTAATTAGTTGTTAATG 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5