BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05250.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477812 jgi|Araly1|477812|fgenesh2_kg.3__513__AT3G05250.1 1382 0.0
> Ahg477812 jgi|Araly1|477812|fgenesh2_kg.3__513__AT3G05250.1
Length=909
Score = 1382 bits (748), Expect = 0.0
Identities = 869/925 (94%), Gaps = 17/925 (2%)
Strand=Plus/Plus
Query 30 TGAGTTGGTATGGCGGCGAAGGAGATCGCCGGCGGGAGCGGTTCTATTGACGATGGATCC 89
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TGAGTTGGTATGGCGGCGAAGGAGATCGCCGGCGGGAGCGGTTCTATTGACGACGGATCC 60
Query 90 GATTTTGATCCATGTCCTATTTGCCTTGGACAATTCCTCCGTGAATCCTACCTTGATACC 149
||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 61 GATACTGATCCATGTCCTATTTGCCTTGGACCATTCCTCCGTGATTCCTACCTTGATACC 120
Query 150 TGTTTCCACAAGTTTTGTTTCAATTGTATAAAACAATGGATCAAAGTTGTTTCAAGCAAG 209
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 121 TGTTTCCACAAGTTTTGTTTCAGTTGTATCAAACAATGGATCAAAGTTGTTTCAAGCAAG 180
Query 210 GCCTCTAAGCAACGTTCCTCAGTGACATGTCCTCTCTGTAAGACAGAGAATTTATCCATC 269
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 181 GCCTCTAAGCAACTTTCCTCAGTGAAATGTCCTCTCTGTAAGACAGAGAATTTCTCCATC 240
Query 270 ATCCACAACTACGATGGATGTTCTTTTGAGCGGCATTATATCGACCCGAATATTCCAGAT 329
||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||
Sbjct 241 ATCCACAACTACGATGGGTGTTCTTTTGACCGGCATTATATCAACCGGAATATTCCAGAT 300
Query 330 GGTTTTGTATTAACAAAAGAACAGAGATACAGGTTGCAGTGTTACTACACCGAATCAGGT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTTTGTATTAACAAAAGAACAGAGATACAGGTTGCAGTGTTACTACACCGAATCAGGT 360
Query 390 TTCCTCGCCGATGTATTCGATGTTGCACGGTTTTGGAAGCTGCAAAAGTTTCTCCAGCCG 449
||| | || |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTGGCTGATGTATTTGATGTTTCACGGTTTTGGAAGCTGCAAAAGTTTCTCCAGCCA 420
Query 450 AACCGGTGCCTTGAAGCCTGGTTGAGGAGGGAGCTTCAAGCTCTGATGCAGGAGGAAGAT 509
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AACCGGTGCCTTGAAGCCTGGTTGAGGAGGGAGCTTCAAGCTCTAATGCAGGAGGAAGAT 480
Query 510 GTTGATATTGTTCTGCATCATTTGGTCGGTGTGATGGAATCCTTCTGcaaaagaatcaaa 569
|||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 481 GTTGATATAGTTATGCATCATTTAGTCGGTGTGATGGATTCCTTCTGCAAAAGAATCAAA 540
Query 570 cagagacgcaaacaagaaacaagaagcgcagagacaacaaatcaagaacaaTTCAAAGCA 629
||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CAGAGACGCAAACTAGAAGCAAGAAGTGCAGAGACAACAAATCAAGAACAATTCAAAGCA 600
Query 630 GTTGTCTCAGAAGCAGCACGTCCATTTGTAATGGCGAGAACAGACCGATTTGTGGATGAA 689
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 GCTGTCTCAGAAGCAGCACGTCCATTTGTAATGGCGAGAACAGACCGGTTTGTGGATGAG 660
Query 690 CTTGAACTCTTTCTGGCCGCGGGACTAAACTTGGAGGCTTATGATGCAATCTATAAGCAG 749
||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 CTTGAACTCTTCCTAGCAGCGGGACTGAACTTGGAGGCTTATGATGCAATCTATAAGCAG 720
Query 750 GGTTTAGAGGGGAACAACCGAAGAGAGATCGGTGCAGCTAGTGAAGAAAGAGAAGAAGTG 809
| | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 -----A-A------C--C-GAAGAGAGATCGGTGCAGCTAGTGAAGAAAGAGAAGAAGTG 765
Query 810 GAAGAACATAATGTAAGAACACGAGTGACTCCTTATTTGTTTATCTTCGAGGAAGACTCA 869
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 766 GAAGAACATAATGTAAGAACAAGAGTTACTCCTTATTTGTTTATCTTCGAGGAAGACTCA 825
Query 870 GACTGAGACAAAACACTTATCACTTCTGTACCATATAAAGAAACTCATAA-CTTCGATTA 928
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 826 GACTGAGACAAAACACTTATCACTTCTGTACCATATAAAGAAACTC-TAAACTTCGATTA 884
Query 929 ATGATATACCAGTTTCGATTTGTTT 953
|| |||||| |||||||||||||||
Sbjct 885 ATAATATACAAGTTTCGATTTGTTT 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5