BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05260.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477813 jgi|Araly1|477813|fgenesh2_kg.3__514__AT3G05260.1 1408 0.0
> Ahg477813 jgi|Araly1|477813|fgenesh2_kg.3__514__AT3G05260.1
Length=1023
Score = 1408 bits (762), Expect = 0.0
Identities = 872/925 (94%), Gaps = 8/925 (1%)
Strand=Plus/Plus
Query 52 AAATTTTCGAATACTCTGAAAGGA-AAATAGGAAAATGGCAAGTGGGTTTCCGCCGCAGA 110
||||||| || |||| |||||||| ||| || |||||||| ||||||||||| |||||||
Sbjct 1 AAATTTTTGAGTACTGTGAAAGGAGAAA-AGAAAAATGGCGAGTGGGTTTCCACCGCAGA 59
Query 111 AGCAAGAGACACAACCAGGGATACAACATGTCATGGAACCAACTCCCGAGTTCTCTAGTT 170
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 60 AGCAAGAAACACAACCAGGGATACAACATGTCATGGAACCAACACCCGAGTTCTCTAGCT 119
Query 171 CTAACTATAAACCTTCCAACAAACTTCATGGAAAAGTGGCACTCGTGACAGGAGGAGACT 230
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 CTAACTACAAACCTTCCAACAAACTTCATGGAAAAGTGGCGCTCGTGACAGGAGGAGACT 179
Query 231 CAGGGATAGGTAAAGCAGTGTGTCACTGCTATGCACTTGAAGGAGCGAGCGTGGCTTTCA 290
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CAGGAATAGGTAAAGCAGTGTGTCACTGCTACGCACTTGAAGGAGCGAGCGTGGCTTTCA 239
Query 291 CGTACGTTAAAGGTAGAGAGGACAAAGACGCAGAAGAAACGCTGCGTTTGCTTCACGAGG 350
||||||| |||||| | ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 240 CGTACGTGAAAGGTCGGGAGGACAAAGATGCAGACGAAACGCTGCGTTTGCTTCATGAGG 299
Query 351 TTAAGACAAGGGAAGCTAAAGAGCCGATCATGATCGCTACTGATTTAGGGTTTGAAGAGA 410
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTAAAACAAGGGAAGCTAAAGAGCCGATCATGATCGCTACTGATTTAGGGTTTGAAGAGA 359
Query 411 ATTGCAAGAGGGTCGTTGAGGAAGTTGTGAACTCCTTTGGACGCATCGATGTGCTTGTGA 470
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 360 ATTGCAAGAGGGTCGTTGAGGAAGTGGTGAATTCCTTTGGACGCATCGATGTGCTTGTGA 419
Query 471 ATTGTGCAGCTGAGCAGCATGAGGTTTCCATTGAGGATATCGATGAGGCTAGGCTTGAGA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTGTGCAGCTGAGCAGCATGAGGTTTCCATTGAGGATATCGATGAGGCTAGGCTTGAGA 479
Query 531 GAGTGTTCCGTACCAACATCTTCTCGCAGTTTTTCTTGGTTAA--ATA--T--GCGTTAA 584
||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||| |
Sbjct 480 GAGTGTTTCGTACCAACATCTTCTCGCAGTTTTTCTTGGTTAATTATAGGTACGCGTTGA 539
Query 585 AGCACATGAAGGAAGGGAGCAGCATCATCAATACGACGTCGGTTGTTGCATACGCAGGAA 644
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 540 AGCACATGAAGGAAGGGAGTAGTATCATCAATACGACGTCGGTTGTTGCATACGCAGGAC 599
Query 645 ACTCAAGCTTACTAGAGTACACAGCTACGAAAGGAGCCATCGTTTCTTTCACACGTGGGT 704
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |
Sbjct 600 ACTCAAGCTTACTAGAGTACACAGCTACAAAAGGAGCCATTGTTTCCTTCACTCGTGGCT 659
Query 705 TAGCTCTTCAGCTTGCACCAAAGGGCATTCGTGTGAACGGTGTCGCTCCTGGTCCGGTCT 764
||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 660 TAGCTCTGCAGCTTGCACCAAAGGGTATACGCGTGAACGGTGTCGCTCCTGGTCCGGTCT 719
Query 765 GGACTCCACTGATACCCGCATCGTTCTCTGAAGAAGCGATCAAACAGTTTGGGTCAGAGA 824
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 GGACTCCACTGATAACCGCATCGTTCTCTGAAGAAGCGATCAAGCAGTTTGGGTCAGAGA 779
Query 825 CACCGATGAAAAGAGCGGCTCAGCCTGTGGAAGTGGCTCCTTCCTACGTTTTCTTGGCTT 884
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 780 CACCGATGAAAAGAGCGGCTCAGCCTGTGGAAGTGGCTCCTTCTTACGTCTTCTTGGCTT 839
Query 885 GTAACCATTGCTCATCTTACTACACCGGCCAAATCCTCCATCCAAACGGTGGTCTTATCG 944
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 840 GTAACCATTGCTCTTCTTACTATACCGGCCAAATCCTTCATCCAAACGGTGGTCTTATCG 899
Query 945 TGAACGCTTGAGCTTGCAATAAGTG 969
|||||||||||| ||| ||||||||
Sbjct 900 TGAACGCTTGAGATTGGAATAAGTG 924
Score = 86.1 bits (46), Expect = 5e-16
Identities = 60/66 (91%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 992 GGAAGTTCTTACAAAGAGAGTATATCCAG---TAGTATAGTCGTGTGATGTAATAAGGTG 1048
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 925 GGAAGTTCTTACAAAGAGAGTATATCCAGTATTATTATAGTTGTGTGATGTAATAAGGTG 984
Query 1049 ATATGT 1054
| ||||
Sbjct 985 ACATGT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5