BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05270.1

Length=1954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926914 jgi|Araly1|926914|scaffold_202475.1                        267    3e-70


> Ahg926914 jgi|Araly1|926914|scaffold_202475.1
Length=530

 Score =  267 bits (144),  Expect = 3e-70
 Identities = 230/266 (86%), Gaps = 27/266 (10%)
 Strand=Plus/Plus

Query  1186  AAAAGTAGAGATGGTAGAGGTAGAGAAACTACAAT-TGGAGAT-GGCTTTGAACGGATCC  1243
             |||||||||||||||||||||||||||| | | || ||||||| ||||||||| ||||||
Sbjct  290   AAAAGTAGAGATGGTAGAGGTAGAGAAATTGC-ATGTGGAGATGGGCTTTGAATGGATCC  348

Query  1244  AAAGAGCAGATCGAGGCATTGCAGAGTCGACTAAAGGAGATAGAGGGGAAGTTATCGGAG  1303
             |||| ||  |  || |   | | | ||    ||||||||||||| ||||||||||| |||
Sbjct  349   AAAG-GC--A--GA-G---T-C-G-GT----TAAAGGAGATAGAAGGGAAGTTATCTGAG  392

Query  1304  ATGAAGAAACTAGAAGCAGAGAACCAGGAACTAGAGTTGTTGTTGGGTGAATCAGGAAAG  1363
             ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  393   ATGAAAAAACTAGAAGCAGAGAACCAGGAACTAGAGTTGTTGGTGGGTGAATCAGGAAAG  452

Query  1364  CAAATGGAGGATCTTCAAAGACAGTTAAACAAAGCACAAGTGAATCTGTCAGAACTAGAG  1423
             |||||  ||||||||||||||||||||||||||||||||||    |    ||||||||||
Sbjct  453   CAAATTCAGGATCTTCAAAGACAGTTAAACAAAGCACAAGT----C----AGAACTAGAG  504

Query  1424  ACTAGAAGAGCAGAGAAGCTGGAACT  1449
             ||||||||||||||||||||||||||
Sbjct  505   ACTAGAAGAGCAGAGAAGCTGGAACT  530


 Score =  122 bits (66),  Expect = 7e-27
 Identities = 76/81 (94%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  407  GCTGCGGCTCTGAAGCAACAGCTTGATGCTTCTACAAGTAAGGTTTCGGCTCTCGAGGAT  466
            ||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct  54   GCTGCGGCTTTGAAGCAACAGCTTGATGCTTCTACAAGCAAGGTTTCGGCCCTTGAGGAT  113

Query  467  CGAAATAGTCATCTTGATAGT  487
            ||||| |||||||||||||||
Sbjct  114  CGAAACAGTCATCTTGATAGT  134


 Score =  121 bits (65),  Expect = 2e-26
 Identities = 69/71 (97%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  617  GAGCTCCAAGCTAGACAAGACGTTACTACTTCTTCGGTCCACGAAGACCTTTACCCGAAA  676
            ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct  144  GAGCTCCAAGCTAGACAAGGCGTTACTACTGCTTCGGTCCACGAAGACCTTTACCCGAAA  203

Query  677  CTTGAGGCTTT  687
            |||||||||||
Sbjct  204  CTTGAGGCTTT  214


 Score = 84.2 bits (45),  Expect = 3e-15
 Identities = 55/60 (92%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  939  CTTTTAGTGATAATGAAATGCAGAGTCCATCAGAGAAGATTATTGGGAAAAGTTCAATGG  998
            |||||||||||||||||||||||||||| || ||||||| | ||||||||| ||||||||
Sbjct  211  CTTTTAGTGATAATGAAATGCAGAGTCCCTCTGAGAAGACTGTTGGGAAAACTTCAATGG  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73437992360


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5