BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05280.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477816 jgi|Araly1|477816|fgenesh2_kg.3__517__AT3G05280.1 1585 0.0
> Ahg477816 jgi|Araly1|477816|fgenesh2_kg.3__517__AT3G05280.1
Length=1058
Score = 1585 bits (858), Expect = 0.0
Identities = 1008/1076 (94%), Gaps = 28/1076 (3%)
Strand=Plus/Plus
Query 90 ATCGGAACAAGATGATGTCCGGCGGGAACTACACGACTATAGACAGCCAGAAAGTCTCTG 149
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATCGGAACAAGATGATGTCCGGCGGGAACTACACGACTATCGACAGCCAGAAAGTCTCTG 60
Query 150 GATCTGTACCTTCTGTTCCAGATCCAGGCCATACCACCGTCAAATTCGCAGAGTCAAATC 209
||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 61 GATCTGTTCCTCCTGTTCCAGATCCAGGCCATACCACCGTCAAATTCACAGAATCAAATC 120
Query 210 TACAAACTTTTCCTCCATCTGCTACTCAGGGCAAGATCTCTGGTGGTAGTAATCCCCCTC 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACAAACTTTTCCTCCATCTGCTACTCAGGGCAAGATCTCTGGTGGTAGTAATCCCCCTC 180
Query 270 GTGATGCTGACGATTCATTTTCTGGGCATGGTAATGGTAGTACAGATGAACCTCAGTCTG 329
| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GAGATGCTGATGATACATTTTCTGGGCATGGTAATGGTAGTTCAGATGAACCTCAGTCTG 240
Query 330 GTGGCTGGCTTCATAAATTCACTGTTGGTGCTTACAAGCCCTTCTTTGATGTCGACACTT 389
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GTGGCTGGCTTCATAAATTCACTGTTGGTGCTTACAAGCCCTTCTTTGATGTTGACACTT 300
Query 390 CCGATGTAGTTGAGAGACTCAAAGAATCCCTTTTCCCATTCCGTGGAACATTTACAGAGA 449
| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 301 CGGATGTTGTAGAGAGACTCAAGGAATCTCTTTTCCCATTCCGTGGAACATTTACAGAGA 360
Query 450 AGACAGCTGATAAACCTGACTTGTATGGTCCATTCTGGATCTGCACCACCTTGATATTCG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACAGCTGATAAACCTGACTTGTATGGTCCATTCTGGATCTGCACCACCTTGATATTCG 420
Query 510 TTGCAGCATCTATCGGCACATTTGTCACATACATAGCACACAAATGGAAGAAACAAGAAT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGCAGCATCTATCGGCACATTTGTCACATACATAGCACACAAATGGAAGAAACAAGAAT 480
Query 570 GGAACTACGATATTAATCTAGTGACTTGGTCTGCAGGAGTATTCTATGGCTATGTCACAA 629
||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 481 GGAACTACGATATCAATCTAGTGACTTGGTCTGCAGGAGTGTTCTACGGATATGTCACAA 540
Query 630 TTGTTCCTCTCGCATTATATGTCGTTCTCAAATACTTCTCTGCACCATCAGGCCTAGTCC 689
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 TTGTTCCTCTAGCATTATATGTCGTTCTCAAATACTTCTCTGCACCATCAGGCCTCGTCC 600
Query 690 AACTCTTCTGTCTTTATGGCTATTCCCTTTTCGTCTTTATCCCAGCATTG-TG-----TC 743
||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 601 AACTCTTCTGTCTCTATGGCTATTCCCTTTTCGTCTTTATCCCAGCATTGGTACCAAATC 660
Query 744 TCTCGGTCGTGCCAGTGGAGATTTTCAGATGGGTCATCGCAGGTGTAGCTGGGTTCATGT 803
||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 661 TCTCGGTTGTCCCAGTGGAGATTTTCAGATGGGTCATCGCGGGTGTAGCCGGGTTCATGT 720
Query 804 CCGCAACATTTGTGGCTTTGAACCTCAAAGCGCATATCAATTCCGCTGGAGAGAGATCGA 863
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGCAACATTTGTGGCTTTGAACCTCAAAGCGCATATCAATTCCGCTGGAGAGAGATCGA 780
Query 864 TCCTGATTATCGCCAGCATCTTTCTTTTGCAGCTCGCTCTTGCAGTTGTGCTAAAGCTCT 923
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 781 TCCTGATTATCGCCAGCATCTTTCTTTTGCAGCTCGCGCTTGCAGTTGTGCTGAAGCTCT 840
Query 924 ATATCTTCAATGTCAAAGTATGATTCA--AAAAGAAATT-TGAAACTTGATCTTTATAGA 980
||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||
Sbjct 841 ATATCTTCAATGTCAAAGTTTGATTCATTAAAAAAAAAACTGAAACTTGATCTTTATAGA 900
Query 981 ACAAAAAAGGTAATGAATTCTGATATCTGTAGATGCTATAATGTTTCTTCTCCTCTGAGT 1040
|||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 901 ACAAAA--GGTAATGATTTCTGATATCTGTAGATGCTATAATG--------------AGT 944
Query 1041 TACCCAATTTTGTACCGTTTGGATACTGTTCCATTTATTTACACTCCATGATTTACTTTG 1100
|| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 945 TATCCAATTTTGTACCGTTTGGATACTGTTACATTTATTTAC--TCCATGATTTACTTTG 1002
Query 1101 TAGAAAATAGTGTTATAACAAAATCGATTTGTAGCTGCTGTGATGTTCAAACTTTC 1156
||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1003 TAGAAGATAGTGTAATAACAAA-TCGATTTGTAGGTGCTGTGATGTTCAAACTTTC 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5