BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05290.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477817 jgi|Araly1|477817|fgenesh2_kg.3__518__AT3G05290.1 1655 0.0
Ahg489576 jgi|Araly1|489576|fgenesh2_kg.6__2710__AT5G27520.1 942 0.0
> Ahg477817 jgi|Araly1|477817|fgenesh2_kg.3__518__AT3G05290.1
Length=1125
Score = 1655 bits (896), Expect = 0.0
Identities = 977/1016 (96%), Gaps = 5/1016 (0%)
Strand=Plus/Plus
Query 81 TCGGAGAGATGGGTGTCGATTTGGAATCGGTGTCGGAAGCAACCTCGGGAGCTATTGGGT 140
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1 TCGGAGAGATGGGTGTCGATTTGGAATCGGTGTCGGAAGCGACCTCCGGAGCCATTGGGT 60
Query 141 CGCTTCTGAGTACAACGATCTTGTATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCG 200
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCTTCTTAGTACAACGATCTTATATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCG 120
Query 201 AGGTTCGAGCTCGTGGTCAGCAAAAATACAGATATCTTTCCGATGTTATGTGGGAGGCAA 260
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 121 AGGTTCGAGCTCGAGGTCAGCAAAAATACAGATATCTTTCAGATGTTATGTGGGAAGCAA 180
Query 261 TTTCTAAAGGACAAGTCTTTTCACTGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTT 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTAAAGGACAAGTCTTTTCACTGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTT 240
Query 321 TCATTTCTCAGTTCATCTACTTTTATAGCTATAGCTATTTCAAGAGAGTTCATAGTGAAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCATTTCTCAGTTCATCTACTTTTATAGCTATAGCTATTTCAAGAGAGTTCATAGTGAAA 300
Query 381 GGACTGGTTCTAAATCAATTGGAACTAAGGCTAATTTGCTCATTGCTGCTGCTGCTGGGG 440
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 301 GGACTGGTTCTAAATCAATTGGAACTAAGGCAAACTTGCTCATTGCTGCTGCTGCTGGGG 360
Query 441 CTTGTACTTCTGTCTTAATTCAGCCTCTAGATACAGCTTCATCAAGGATGCAAACTAGTG 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 CTTGTACTTCTGTCTTAATTCAGCCTCTGGATACAGCTTCATCAAGGATGCAAACTAGTG 420
Query 501 AGTTTGGAGAATCAAAAGGGTTGTGGAAGACCTTAACAGAGGGTTCATGGGCAGACGCAT 560
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 421 AGTTTGGAGAATCAAAAGGGTTGTGGAAGACCTTAACAGAGGGTACATGGGGAGATGCAT 480
Query 561 TTGATGGCCTAGGGATCTCTCTTTTATTGACTTCAAATCCTGCAATTCAGTATACAGTGT 620
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGATGGCCTAGGGATCTCTCTCCTATTGACTTCAAATCCTGCAATTCAGTATACAGTGT 540
Query 621 TTGATCAGCTGAAACAGCACCTTCTTAAGCAGAAAAATGCAAAAGCCGAGAATGGTTCTT 680
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 541 TTGATCAGCTGAAACAGCATCTTCTTAAGCAGAAAAACGCAAAAGCAGAGAATGGTTCTT 600
Query 681 CTCCGGTAGTGCTCTCTGCCTTTATGGCGTTTGTCTTAGGTGCGGTCTCCAAAAGTGTTG 740
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CTCCGGTAGTGCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCCAAAAGTGTTG 660
Query 741 CCACCGTGCTCACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGAGT 800
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CCACCGTGCTTACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGACT 720
Query 801 CGAAGGAAAACGAAACAAAGAAGCCGAGAAGAAGAACAAGGAAAACAATTCCAGGGGTTG 860
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 721 CGAAGGAAAACGAAACAAAGAAGCCCAGAAGAAGATCAAGGAAAACAATTCCAGGGGTTG 780
Query 861 TGTATGCCATATGGAGAAAAGAAGGAATGTTAGGGTTCTTTAAGGGCTTGCAGGCTCAAA 920
| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 781 TCTATGCCATATGGAGAAAAGAAGGGATGTTAGGGTTCTTTAAGGGCTTACAGGCTCAGA 840
Query 921 TCTTGAAGACTGT-CTTGAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACAGCA 979
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 TCTTGAAGACTGTTCT-GAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACCGCA 899
Query 980 ACGACATGGATTCTCATTCTAGCTATCCGTAGAACCCTGTTTCTCACAAACACAAAGGGT 1039
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 900 ACGACATGGATTCTCATTCTAGCTATCCGTAGAACTCTGTTTATCACAAACACAAAGGGT 959
Query 1040 AAGTT-AAGAAGTCCTTAGAGACTCCCACCACCAAGCTTATTTCACGTCCTTGTAA 1094
||||| || |||||||| |||||||||||||||||| ||||||||| ||| |||||
Sbjct 960 AAGTTGAA-AAGTCCTT-GAGACTCCCACCACCAAGGTTATTTCACTTCCATGTAA 1013
Score = 137 bits (74), Expect = 2e-31
Identities = 92/100 (92%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 1184 GGTGTAATAAAAGTAAGA-ATCTTTGTGTAGAAGAATCAAAGAAAATG-ATGTAATATG- 1240
|||||||||||||| ||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1027 GGTGTAATAAAAGTGAGATATCTTTGTGTAGAAGAATCAAAGAAAATGAAT-TAATATGA 1085
Query 1241 AACGTTTCTTAAGAAACTCAAATTTATAACATTATTGTAT 1280
||| |||||||||||||||||||||| |||||||| ||||
Sbjct 1086 AACATTTCTTAAGAAACTCAAATTTAAAACATTATGGTAT 1125
> Ahg489576 jgi|Araly1|489576|fgenesh2_kg.6__2710__AT5G27520.1
Length=1328
Score = 942 bits (510), Expect = 0.0
Identities = 806/946 (85%), Gaps = 31/946 (3%)
Strand=Plus/Plus
Query 98 GATTTGGAATCGGTGTCGGAAGCAACCTCGGGAGCTATTGGGTCGCTTCTGAGTACAACG 157
||||||||||| | || ||||| ||||| ||||||||||| || ||||| || || ||
Sbjct 100 GATTTGGAATCTATCTCCGAAGCCACCTCCGGAGCTATTGGATCTCTTCTCAGCACTACC 159
Query 158 ATCTTGTATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGT 217
|| || || ||||||||||| || ||||| ||||||||||||||| |||| | ||| |||
Sbjct 160 ATTTTATACCCTCTTGATACCTGCAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGT 219
Query 218 CAGCAAAAATACAGATATCTTTCCGATGT-TATGTGGGAGGCAATTTCTA-AAGGACAAG 275
||||||||||||||||| || || ||||| | | ||||| |||||||| | |||| ||
Sbjct 220 CAGCAAAAATACAGATACCTGTCAGATGTGT-TTTGGGAAGCAATTTC-ATCAGGA-AA- 275
Query 276 TCTT-T-TCAC-TGTATCAAGGCCTTGGAACTAAGAATTTTCAGT-CTTTCATTTC-TCA 330
| || | || | |||||||||||||||| ||||||||||| |||| |||| ||||| ||
Sbjct 276 TGTTCTCTC-CTTGTATCAAGGCCTTGGGACTAAGAATTTGCAGTCCTTT-ATTTCGTC- 332
Query 331 GTTCATCTACTTT-TATAGCTATAGCTATTTCAAGAGAGTT-CATAGTGAAAGGACTGGT 388
|||||||| ||| ||||| ||||||||||||||||| ||| ||| | |||||| ||||
Sbjct 333 CTTCATCTA-TTTCTATAGTTATAGCTATTTCAAGAG-GTTACATTCTCAAAGGATTGGT 390
Query 389 TCTAAATCAATTGGAACTAAGGCTAATTTGCTCATTGCTGCTGCTGCTGGGGCTTGTACT 448
||||| || |||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 391 TCTAAGTCGATTGGAACAAAGGCAAATCTGCTCATTGCTGCTGCTGCTGGGGCTTGTACC 450
Query 449 TCTGTCTTAATTCAGCCTCTAGATACAGCTTCATCAAGGATGCAAACTAGTGAGTTTGGA 508
||||| || | || |||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 451 TCTGTGTTGACCCAACCTCTAGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGA 510
Query 509 GAATCAAAAGGGTTGTGGAAGACCT-TAACAGAGGGTTCATGGGCAGACGCATTTGATGG 567
|||| |||||||||||||||| || |||| || |||||||||| | | |||||||||||
Sbjct 511 AAATCTAAAGGGTTGTGGAAGA-CTCTAACCGATGGTTCATGGGGAAATGCATTTGATGG 569
Query 568 CCTAGGGATCTCTCTTTTATTGACTTCAAATCCTGCAATTCAGTATACAGTGTTTGATCA 627
||| ||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 570 CCTTGGGATTTCTCTTTTATTGACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCA 629
Query 628 GCTGAAACAGCACCTTCTTAAGCAGAA-AAATGCAAAAGCCGAG-AATGGTTCTTCTCCG 685
|||||||||| |||||||| || | || ||| |||||| || || || | |||||| ||
Sbjct 630 GCTGAAACAGAACCTTCTTGAG-AAAAGAAAGGCAAAATCC-AGCAAAGATTCTTCCCCT 687
Query 686 GTAGTGCTCTCTGCCTTTATGGCGTTTGTCTTAGGTGCGGTCTCCAAAAGTGTTGCCACC 745
||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 688 GTAGTCCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACC 747
Query 746 GTGC-TCACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGAGTCGAA 804
|| | |||||||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 748 GT-CATCACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCAGCAGATGACTCAAA 806
Query 805 GGAAAACGAAACAAAGAAGCCGAGAAGAAGAA-CAAGGAAAACAATTCCAGGGGTTGTGT 863
|||||| ||||| |||||||| |||| ||||| || ||||||| ||||| ||||| || |
Sbjct 807 GGAAAATGAAACGAAGAAGCCCAGAAAAAGAATCA-GGAAAACGATTCCCGGGGTAGTCT 865
Query 864 ATGCCATATGGAGAAAAGAAGGAATGTTAGGGTTCTTTAAGGGCTTGCAGGCTCAAATCT 923
|||| ||||||| ||||||||| || ||||| ||||| || |||||||||||||| ||||
Sbjct 866 ATGCTATATGGAAAAAAGAAGGGATCTTAGGATTCTTCAAAGGCTTGCAGGCTCAGATCT 925
Query 924 TGAAGACTGTCTTGAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACAGCAACGA 983
| ||||| || |||||||| || |||||| | |||||||||||||||||||| ||||| |
Sbjct 926 TAAAGACAGTTTTGAGCTCGGCGTTGCTACTAATGATCAAGGAGAAAATCACTGCAACCA 985
Query 984 CATGGATTCTCATTCTAGCTATCCGTAGAACCCTGTTTCTCACAAA 1029
||||||||||||||||||| || ||||| |||||| |||||||
Sbjct 986 CATGGATTCTCATTCTAGCAATA---AGAACTCTGTTTGTCACAAA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5