BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05300.1

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928115 jgi|Araly1|928115|scaffold_300572.1                        638    0.0  


> Ahg928115 jgi|Araly1|928115|scaffold_300572.1
Length=617

 Score =  638 bits (345),  Expect = 0.0
 Identities = 426/466 (91%), Gaps = 1/466 (0%)
 Strand=Plus/Plus

Query  2    TAGGGGCGATAAATTTTTAAGCCAAGCTGTTGAAGAGGCATATATTGGAGTTGAGTGTGG  61
            ||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  135  TAGGGACCATAAATATTTAACCCAAGCTGTTGAAGAGGCATATATTGGAGTTGAGTGTGG  194

Query  62   TGATGGTTATCCGTTTGG-GCTGTTATTGTTCATAAGAACGATATTGTAGTGAGCTGCCA  120
            ||||||   ||||||||| || |||||||||||||||||||| ||| |||||||||||||
Sbjct  195  TGATGGCCGTCCGTTTGGAGCGGTTATTGTTCATAAGAACGAAATTTTAGTGAGCTGCCA  254

Query  121  CAACATGGTTTTCAAATACAAAGATCCAACGGCACATGCAGAAGTCATAGCCATTAGAGA  180
             || |||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  255  TAATATGGTTTTGAAATACAAAGATCCAACGGCACATGCTGAAATCATAGCCATTAGAGA  314

Query  181  GGCATGCAAGAAACTGAATGAAATTAAGCTATCGGAATGCGAGATTTACGCATCATGCGA  240
            ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  315  GGCTTGCAAGAAACTGAATGAAATTAAGCTATCGGAATGTGAGCTTTACGCATCATGCGA  374

Query  241  GCCTTGTCCCATGTGTTTTGGAGCCATCCATCTCTCAAGGCTCAAGAGATTGGTGTACGA  300
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | 
Sbjct  375  GCCTTGTCCGATGTGTTTTGGAGCCATCCATCTCTCAAGACTCAAGAGATTGGTGTATGG  434

Query  301  GGCGAAAGTCGAAGCAGCTTTAGCCATTGGGTTCAATAGGATCTTAGCAGATGGTGTGAG  360
            |||||||| |||||||||  |||||||||| ||||| || ||| |||| || ||||||||
Sbjct  435  GGCGAAAGCCGAAGCAGCAGTAGCCATTGGATTCAACAGCATCATAGCGGACGGTGTGAG  494

Query  361  AGGCGTTGGGTGCTACCATAACTCTAACCTAGAGATTACAAAACTCGATCTGAGTATCGC  420
            |||| |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct  495  AGGCATTGGGTGCTACCATAAGTCTAACCTAGAGATTAAAAAACTCGATGTGAGTATCGC  554

Query  421  CGAGCAAGTGTTTCAGAATACAAAGGGGAAGTTCAGTTTATCGTAA  466
             ||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct  555  GGAGCAAGTGTTCCAGAATACAAAGGGGAAGTTCAGTATATAGTAA  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16864770338


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5