BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05310.1 Length=1947 Score E Sequences producing significant alignments: (Bits) Value Ahg477819 jgi|Araly1|477819|fgenesh2_kg.3__520__AT3G05310.1 2916 0.0 > Ahg477819 jgi|Araly1|477819|fgenesh2_kg.3__520__AT3G05310.1 Length=1944 Score = 2916 bits (1579), Expect = 0.0 Identities = 1832/1954 (94%), Gaps = 17/1954 (1%) Strand=Plus/Plus Query 1 ATGTGGATGGGTGTGGGAGATTCTAGTGGCTCGCCAAAACCGATAAGAATCGTTGTGGTT 60 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGTGGATGGGTGTGGGAGATTATAGTGGCTCGCCAAAACCGATAAGAATTGTTGTGGTT 60 Query 61 GGTGAAAAGGGCAGTGGAAAATCAAGCTTGATTATGGCTGCAGCAAGAAATACTTTCCAT 120 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GGTGAGAAGGGCAGTGGAAAATCAAGCTTGATTATGGCTGCAGCAAGAAACACTTTCCAT 120 Query 121 CCAAACATCCCTTCTCTGTTACCTTACACCAATTTACCTTCTGAATTCTTCCCTGACCGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCAAACATCCCTTCTCTGTTACCTTACACCAATTTACCTTCTGAATTCTTCCCTGACCGT 180 Query 181 ATTCCCGCTACTGTTATCGACACTTCTTCAAGACCGGAAGACAAGGGAAAGGTAGTTAAG 240 || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 181 ATACCCGCTACTGTTATCGACACTTCTTCAAGACCGGAAGATAAGGGAAAGGTACTTAAG 240 Query 241 GAAGTTAGGCAAGCAGATGCAATTGTTTTGACATTTGCATTTGATAGACCGGAGACTCTT 300 ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 241 GAAGTTAAGCAAGCAGATGCAATTGTTTTAACATTTGCATTCGATAGACCGGAGACTCTT 300 Query 301 GACCGTTTGAGTAAATACTGGCTTCCTCTGTTTCGACAATTAGAGGTGAGAGTTCCTATC 360 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GACCGTTTGAGTAAACACTGGCTTCCTCTGTTTCGACAATTAGAGGTGAGAGTTCCTATC 360 Query 361 ATAGTGGCAGGTTATGAAGTTGATAACAAAGAGGCTTATAATCACTTCAGCATTGAACAA 420 ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct 361 ATAGTGGCAGGTTATGAAGTTGACAGCAAAGAGGCTTATAATCAAACCAGCATTGAACAA 420 Query 421 ATAACATCAGCTCTGATGAAACAATATCGAGAGGTCGAGACATCTATCCAGTGGTCTGCT 480 ||||| ||| || ||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 ATAACGTCACCTATGATGCAACGATATCGAGAGGTCGAGACATCTATCCAGTGGTCTGCT 480 Query 481 CAGAGGCTAGATCAGGCTA-AAGATGTTCTCTACTATGCACAAAAAGCGGTTATTGACCC 539 ||||||||| ||||||||| || | || |||||||||||||||||||| |||||| |||| Sbjct 481 CAGAGGCTAAATCAGGCTACAA-AGGTACTCTACTATGCACAAAAAGCAGTTATTCACCC 539 Query 540 AGTAGGACCTGTGTTTGATCAAGAAAACAATGT-ACTGAAGCCTCGCTGTATCGCTGCCT 598 |||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||| Sbjct 540 AGTAGGACCTGTGTTTAATCAAGAAACCAAT-TCACTGAAGCCTCGCTGTATCGCTGCCT 598 Query 599 TGAAACGTATCTTCTTACTCTCTGACCATAACATGGATGGTATTCTTAGTGACGAGGAGT 658 ||||||| ||||| ||||||||||| |||||| ||||||||||||| ||||||| |||| Sbjct 599 TGAAACGAATCTTTTTACTCTCTGATCATAACGTGGATGGTATTCTCAGTGACGCCGAGT 658 Query 659 TAAACGAGCTTCAGAAAAAATGCTTCGATACACCATTGGTGCCTTGTGAAATTAAACAAA 718 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 659 TAAACGAGCTTCAGAAGAAATGCTTCGATACACCATTGGTGCCTTGTGAAATTAACCAAA 718 Query 719 TGAAAAACGTTATGCAAGTCACGTTTCCACAAGGAGTTAATGAAAGAGGACTCACATTGG 778 ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 719 TGAAAAAAGCTATGCAAGTCAAGTTTCCACAAGGAGTTAATGAAAGAGGACTCACATTGG 778 Query 779 ATGGTTTCTTGTTTCTAAACACACGTT-TAATCGAAGAAGCAAGAATCCAAACACTATGG 837 ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| Sbjct 779 ATGGTTTCTTGTTTCTAAACACACGTTATA-TCGAAGATGCAAGAATCCAAACACTATGG 837 Query 838 ACTATGCTCAGGAAATTCGGGTATAGTAACGATCTAAGACTTGGAGATGATCT-AGTTCC 896 |||||||| |||||||||||||| | ||||||||||||||||||||||||||| | |||| Sbjct 838 ACTATGCTTAGGAAATTCGGGTACAATAACGATCTAAGACTTGGAGATGATCTGA-TTCC 896 Query 897 TTATTCATCATTCAAACGCCAAGCTGATCAGAGTGTTGAGCTAACAAATGTAGCTATTGA 956 |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 897 TTATTCATCATTCAAACGTGAGGCTGATCAGAGTGTTGAGCTAACAAATGTAGCTATTGA 956 Query 957 ATTCTTAAGGGAAGTCTATGAGTTTTTCGACAGTAACGGTGACAATAACTTGGAACCTCA 1016 ||||||||||||||||||||||||||| || | | || |||||||||||||||||||||| Sbjct 957 ATTCTTAAGGGAAGTCTATGAGTTTTTTGATAATGACTGTGACAATAACTTGGAACCTCA 1016 Query 1017 TGAAATGGGATATC-TCTTTGAAACTGCACCTGAAAGTCCTTGGACTAAACCTC-TGTAT 1074 ||||| |||||| | |||||||||||||||||||||||||||||||| || ||| | ||| Sbjct 1017 TGAAACGGGATA-CATCTTTGAAACTGCACCTGAAAGTCCTTGGACTGAAGCTCCT-TAT 1074 Query 1075 AAGGATGTTACAGAGGAAAATATGGATGGAGGATTATCTCTTGAAGCTTTCCTCTCACTG 1134 |||||||| |||||||||| || |||||||||||||||||| |||||||||||||||||| Sbjct 1075 AAGGATGTCACAGAGGAAACTAAGGATGGAGGATTATCTCTGGAAGCTTTCCTCTCACTG 1134 Query 1135 TGGTCATTGATGACACTAATTGATCCACCTAGGAGTCTGGAATATCTGATGTACATTAGA 1194 |||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||||| Sbjct 1135 TGGTCATTGATGACACTAATAGATCCAGCTAGGAGTCTTGAATATTTGATGTACATTAGA 1194 Query 1195 TTCCCATCTGATGATCCATCTTCAGCGGTTCGCGTAACTAGGAAGCGAGTTCTTGATCGC 1254 ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1195 TTCCCAT---ATGATCCATCTTCAGCGATTCGCGTAACTAGGAAGCGAGTTCTAGATCGC 1251 Query 1255 AAGGAGAAGAAATCCGAAAGAAAAGTTGTTCAGTGTTTTGTGTTTGGTCCCAAGAATGCT 1314 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1252 AAGGAGAAGAAATCTGAAAGAAAAGTTGTTCAGTGTTTTGTGTTTGGCCCCAAGAATGCT 1311 Query 1315 GGAAAGTCTGCATTGCTCAATCAGTTTATCGGAAGGTCATACGATGATGACAGCAACAAC 1374 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1312 GGAAAGTCTGCATTCCTCAATCATTTTATCGGAAGGTCATACGATGATGACAGCAACAAC 1371 Query 1375 AACAATGGATCAACTGATGAACATTATGCTGTAAATATGGTTAAAGAACCTGGAGTGATT 1434 |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| || Sbjct 1372 AACAATGGATCAACAGATGAACGTTATGCTGTAAATATGGTTAAAGAATCTGGAGTGGTT 1431 Query 1435 TCAGATACAGATAAAACTCTGGTGCTAAAGGAAGTTCGAATTAAAGATGATGGATTCATG 1494 || |||||||||||||||||||||| |||||| |||||||| |||| |||||||||||| Sbjct 1432 GCAAATACAGATAAAACTCTGGTGCTGAAGGAAATTCGAATTCAAGAAGATGGATTCATG 1491 Query 1495 TTATCAAA-AGAAGCATTGGCTGCTTGTGATGTAGCAATCTTCATCTATGATTCTTCTGA 1553 |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1492 TTATCAAATA-AAGCATTGGCTGCTTGTGATGTAGCTATCTTCATCTATGATTCTTCTGA 1550 Query 1554 TGAGTACTCGTGGAACAGAGCCGTTGACATGCTTGCTGAGGTTGCAACCATTGCCAAAGA 1613 ||||| |||||||||||||||| ||||| ||||||||||||| |||||||||| |||||| Sbjct 1551 TGAGTCCTCGTGGAACAGAGCCATTGACTTGCTTGCTGAGGTCGCAACCATTGGCAAAGA 1610 Query 1614 TTCCGGTTACGTGTTTCCCTGCTTAATGGTCGCAGCAAAAACTGATCTCGATCCATTCCC 1673 | | ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1611 TGCTGGTTATGTGTTTCCCTGCTTAATGGTTGCAGCAAAAACTGATCTTGATCCATTCCC 1670 Query 1674 AGTGGCAATTCAAGAATCAACTAGAGTTACACAAGATATAGGGATTGATGCTCCAATACC 1733 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1671 AATGGCGATTCAAGAATCAACTAGAGTTACACAAGATATAGGGATTGATGCTCCAATACC 1730 Query 1734 AATCAGCTCTAAATTGGGAGATGTCAGTAACTTGTTTCGGAAGATCTTAACCGCGGCAGA 1793 ||||||||||||| |||||||| || ||||||| ||||| |||||||||||||||||||| Sbjct 1731 AATCAGCTCTAAACTGGGAGATTTCGGTAACTTATTTCGAAAGATCTTAACCGCGGCAGA 1790 Query 1794 GAATCCCCATTTGAATATTCCAGAGATTGAGTCAAAGAAGAAAAGGAGTTGCAAGCTAAA 1853 | |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1791 GCATCCTCATTTGAATATTCCAGCGATAGAGTCAAAGAAGAAAAGGAGTTGCAAGCTAAT 1850 Query 1854 CAACAGATCTCTAATGGCGGTTTCAATCGGGACAGCGGTTTTGATCGCCGGGCTGGCTTC 1913 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1851 CAACAGATCTCTAATGGCGGTTTCAATCGGGACAGCGGCTTTGATCGCCGGGCTGGCTTC 1910 Query 1914 TTTCCGTCTCTACACCGCAAGAAAGCAGAGTTAA 1947 ||||||||||||||||||||||||| ||||||| Sbjct 1911 ATTCCGTCTCTACACCGCAAGAAAGCTGAGTTAA 1944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73171360645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5