BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05310.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477819 jgi|Araly1|477819|fgenesh2_kg.3__520__AT3G05310.1 2916 0.0
> Ahg477819 jgi|Araly1|477819|fgenesh2_kg.3__520__AT3G05310.1
Length=1944
Score = 2916 bits (1579), Expect = 0.0
Identities = 1832/1954 (94%), Gaps = 17/1954 (1%)
Strand=Plus/Plus
Query 1 ATGTGGATGGGTGTGGGAGATTCTAGTGGCTCGCCAAAACCGATAAGAATCGTTGTGGTT 60
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTGGATGGGTGTGGGAGATTATAGTGGCTCGCCAAAACCGATAAGAATTGTTGTGGTT 60
Query 61 GGTGAAAAGGGCAGTGGAAAATCAAGCTTGATTATGGCTGCAGCAAGAAATACTTTCCAT 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGTGAGAAGGGCAGTGGAAAATCAAGCTTGATTATGGCTGCAGCAAGAAACACTTTCCAT 120
Query 121 CCAAACATCCCTTCTCTGTTACCTTACACCAATTTACCTTCTGAATTCTTCCCTGACCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAAACATCCCTTCTCTGTTACCTTACACCAATTTACCTTCTGAATTCTTCCCTGACCGT 180
Query 181 ATTCCCGCTACTGTTATCGACACTTCTTCAAGACCGGAAGACAAGGGAAAGGTAGTTAAG 240
|| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 181 ATACCCGCTACTGTTATCGACACTTCTTCAAGACCGGAAGATAAGGGAAAGGTACTTAAG 240
Query 241 GAAGTTAGGCAAGCAGATGCAATTGTTTTGACATTTGCATTTGATAGACCGGAGACTCTT 300
||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 241 GAAGTTAAGCAAGCAGATGCAATTGTTTTAACATTTGCATTCGATAGACCGGAGACTCTT 300
Query 301 GACCGTTTGAGTAAATACTGGCTTCCTCTGTTTCGACAATTAGAGGTGAGAGTTCCTATC 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACCGTTTGAGTAAACACTGGCTTCCTCTGTTTCGACAATTAGAGGTGAGAGTTCCTATC 360
Query 361 ATAGTGGCAGGTTATGAAGTTGATAACAAAGAGGCTTATAATCACTTCAGCATTGAACAA 420
||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 361 ATAGTGGCAGGTTATGAAGTTGACAGCAAAGAGGCTTATAATCAAACCAGCATTGAACAA 420
Query 421 ATAACATCAGCTCTGATGAAACAATATCGAGAGGTCGAGACATCTATCCAGTGGTCTGCT 480
||||| ||| || ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAACGTCACCTATGATGCAACGATATCGAGAGGTCGAGACATCTATCCAGTGGTCTGCT 480
Query 481 CAGAGGCTAGATCAGGCTA-AAGATGTTCTCTACTATGCACAAAAAGCGGTTATTGACCC 539
||||||||| ||||||||| || | || |||||||||||||||||||| |||||| ||||
Sbjct 481 CAGAGGCTAAATCAGGCTACAA-AGGTACTCTACTATGCACAAAAAGCAGTTATTCACCC 539
Query 540 AGTAGGACCTGTGTTTGATCAAGAAAACAATGT-ACTGAAGCCTCGCTGTATCGCTGCCT 598
|||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 540 AGTAGGACCTGTGTTTAATCAAGAAACCAAT-TCACTGAAGCCTCGCTGTATCGCTGCCT 598
Query 599 TGAAACGTATCTTCTTACTCTCTGACCATAACATGGATGGTATTCTTAGTGACGAGGAGT 658
||||||| ||||| ||||||||||| |||||| ||||||||||||| ||||||| ||||
Sbjct 599 TGAAACGAATCTTTTTACTCTCTGATCATAACGTGGATGGTATTCTCAGTGACGCCGAGT 658
Query 659 TAAACGAGCTTCAGAAAAAATGCTTCGATACACCATTGGTGCCTTGTGAAATTAAACAAA 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 TAAACGAGCTTCAGAAGAAATGCTTCGATACACCATTGGTGCCTTGTGAAATTAACCAAA 718
Query 719 TGAAAAACGTTATGCAAGTCACGTTTCCACAAGGAGTTAATGAAAGAGGACTCACATTGG 778
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGAAAAAAGCTATGCAAGTCAAGTTTCCACAAGGAGTTAATGAAAGAGGACTCACATTGG 778
Query 779 ATGGTTTCTTGTTTCTAAACACACGTT-TAATCGAAGAAGCAAGAATCCAAACACTATGG 837
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 779 ATGGTTTCTTGTTTCTAAACACACGTTATA-TCGAAGATGCAAGAATCCAAACACTATGG 837
Query 838 ACTATGCTCAGGAAATTCGGGTATAGTAACGATCTAAGACTTGGAGATGATCT-AGTTCC 896
|||||||| |||||||||||||| | ||||||||||||||||||||||||||| | ||||
Sbjct 838 ACTATGCTTAGGAAATTCGGGTACAATAACGATCTAAGACTTGGAGATGATCTGA-TTCC 896
Query 897 TTATTCATCATTCAAACGCCAAGCTGATCAGAGTGTTGAGCTAACAAATGTAGCTATTGA 956
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTATTCATCATTCAAACGTGAGGCTGATCAGAGTGTTGAGCTAACAAATGTAGCTATTGA 956
Query 957 ATTCTTAAGGGAAGTCTATGAGTTTTTCGACAGTAACGGTGACAATAACTTGGAACCTCA 1016
||||||||||||||||||||||||||| || | | || ||||||||||||||||||||||
Sbjct 957 ATTCTTAAGGGAAGTCTATGAGTTTTTTGATAATGACTGTGACAATAACTTGGAACCTCA 1016
Query 1017 TGAAATGGGATATC-TCTTTGAAACTGCACCTGAAAGTCCTTGGACTAAACCTC-TGTAT 1074
||||| |||||| | |||||||||||||||||||||||||||||||| || ||| | |||
Sbjct 1017 TGAAACGGGATA-CATCTTTGAAACTGCACCTGAAAGTCCTTGGACTGAAGCTCCT-TAT 1074
Query 1075 AAGGATGTTACAGAGGAAAATATGGATGGAGGATTATCTCTTGAAGCTTTCCTCTCACTG 1134
|||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 1075 AAGGATGTCACAGAGGAAACTAAGGATGGAGGATTATCTCTGGAAGCTTTCCTCTCACTG 1134
Query 1135 TGGTCATTGATGACACTAATTGATCCACCTAGGAGTCTGGAATATCTGATGTACATTAGA 1194
|||||||||||||||||||| |||||| |||||||||| |||||| ||||||||||||||
Sbjct 1135 TGGTCATTGATGACACTAATAGATCCAGCTAGGAGTCTTGAATATTTGATGTACATTAGA 1194
Query 1195 TTCCCATCTGATGATCCATCTTCAGCGGTTCGCGTAACTAGGAAGCGAGTTCTTGATCGC 1254
||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1195 TTCCCAT---ATGATCCATCTTCAGCGATTCGCGTAACTAGGAAGCGAGTTCTAGATCGC 1251
Query 1255 AAGGAGAAGAAATCCGAAAGAAAAGTTGTTCAGTGTTTTGTGTTTGGTCCCAAGAATGCT 1314
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1252 AAGGAGAAGAAATCTGAAAGAAAAGTTGTTCAGTGTTTTGTGTTTGGCCCCAAGAATGCT 1311
Query 1315 GGAAAGTCTGCATTGCTCAATCAGTTTATCGGAAGGTCATACGATGATGACAGCAACAAC 1374
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1312 GGAAAGTCTGCATTCCTCAATCATTTTATCGGAAGGTCATACGATGATGACAGCAACAAC 1371
Query 1375 AACAATGGATCAACTGATGAACATTATGCTGTAAATATGGTTAAAGAACCTGGAGTGATT 1434
|||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1372 AACAATGGATCAACAGATGAACGTTATGCTGTAAATATGGTTAAAGAATCTGGAGTGGTT 1431
Query 1435 TCAGATACAGATAAAACTCTGGTGCTAAAGGAAGTTCGAATTAAAGATGATGGATTCATG 1494
|| |||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||
Sbjct 1432 GCAAATACAGATAAAACTCTGGTGCTGAAGGAAATTCGAATTCAAGAAGATGGATTCATG 1491
Query 1495 TTATCAAA-AGAAGCATTGGCTGCTTGTGATGTAGCAATCTTCATCTATGATTCTTCTGA 1553
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1492 TTATCAAATA-AAGCATTGGCTGCTTGTGATGTAGCTATCTTCATCTATGATTCTTCTGA 1550
Query 1554 TGAGTACTCGTGGAACAGAGCCGTTGACATGCTTGCTGAGGTTGCAACCATTGCCAAAGA 1613
||||| |||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||
Sbjct 1551 TGAGTCCTCGTGGAACAGAGCCATTGACTTGCTTGCTGAGGTCGCAACCATTGGCAAAGA 1610
Query 1614 TTCCGGTTACGTGTTTCCCTGCTTAATGGTCGCAGCAAAAACTGATCTCGATCCATTCCC 1673
| | ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1611 TGCTGGTTATGTGTTTCCCTGCTTAATGGTTGCAGCAAAAACTGATCTTGATCCATTCCC 1670
Query 1674 AGTGGCAATTCAAGAATCAACTAGAGTTACACAAGATATAGGGATTGATGCTCCAATACC 1733
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 AATGGCGATTCAAGAATCAACTAGAGTTACACAAGATATAGGGATTGATGCTCCAATACC 1730
Query 1734 AATCAGCTCTAAATTGGGAGATGTCAGTAACTTGTTTCGGAAGATCTTAACCGCGGCAGA 1793
||||||||||||| |||||||| || ||||||| ||||| ||||||||||||||||||||
Sbjct 1731 AATCAGCTCTAAACTGGGAGATTTCGGTAACTTATTTCGAAAGATCTTAACCGCGGCAGA 1790
Query 1794 GAATCCCCATTTGAATATTCCAGAGATTGAGTCAAAGAAGAAAAGGAGTTGCAAGCTAAA 1853
| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1791 GCATCCTCATTTGAATATTCCAGCGATAGAGTCAAAGAAGAAAAGGAGTTGCAAGCTAAT 1850
Query 1854 CAACAGATCTCTAATGGCGGTTTCAATCGGGACAGCGGTTTTGATCGCCGGGCTGGCTTC 1913
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1851 CAACAGATCTCTAATGGCGGTTTCAATCGGGACAGCGGCTTTGATCGCCGGGCTGGCTTC 1910
Query 1914 TTTCCGTCTCTACACCGCAAGAAAGCAGAGTTAA 1947
||||||||||||||||||||||||| |||||||
Sbjct 1911 ATTCCGTCTCTACACCGCAAGAAAGCTGAGTTAA 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5