BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05320.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477820 jgi|Araly1|477820|fgenesh2_kg.3__521__AT3G05320.1 2200 0.0
> Ahg477820 jgi|Araly1|477820|fgenesh2_kg.3__521__AT3G05320.1
Length=1409
Score = 2200 bits (1191), Expect = 0.0
Identities = 1356/1432 (95%), Gaps = 25/1432 (2%)
Strand=Plus/Plus
Query 1 ATGAATTCTCCGTTAAGTT-CTAAGAATCTGAGAATCTTTTCAAAGTCTGTTGCTTGCAA 59
|||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTCTCCGTTGAGTTGC-AAGAATCTGAGAATCTTTTCAAAATCTGTTGCTTGCAA 59
Query 60 ATGTCTTGTTCTTGTTGGTATTGCTCTGTTCTACAGAGCTCTGTTACTCTCTTACTCTCC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATGTCTTGTTCTTGTTGGTATTGCTCTGTTCTACAGAGCTCTGTTACTCTCTTACTCTCC 119
Query 120 CAGAAACGCTCTGAGCAATAGCTTATTGTTTCGAGATCGTCACATGTCAGATTCCTCCTC 179
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 CAGAAACGCTCTAAGCAATAGCTTATTGTTTCGAGCCCGTCACATGTCAGATTCCTCCTC 179
Query 180 AACCGGTGGAATCCGAACTGATAAGTTTCTCGAGGTTCCTCAGATCGTCTGGGGACTAAA 239
|||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 180 AACCGGTGGAATTCGGACTGATAAGTTTCTCGAGGTTCCTCAGATCGTGTGGGGTCTAAA 239
Query 240 CAATCAGAAGATAGCTTTTGCTAGAGCTTGCTTGACGGCAAGAATGATGAACAGAACGCT 299
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 240 CAATCAGAAGATAGCTTTTGCTAGAGCTTGCTTGACTGCGAGAATGATGAACAGAACGCT 299
Query 300 TCTCATGCCTAGTCTAAGTGCTTCCTTGTTCTACAAGGAAGTTGATAAGCTTCGTCCCAT 359
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 300 TCTCATGCCTAGTCTAAGTGCTTCCTTGTTTTACAAGGAAGTCGATAAGCTTCGTCCGAT 359
Query 360 TCCGTTTGATAAAGTGTTTCAGTTTGAAAGATTCAACTCTCTCTGTTCAGGGTTTGTGCG 419
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 TCCGTTTGATAAAGTTTTTCAGTTTGAAAGATTCAACTCTCTCTGTTCGGGGTTTGTGCG 419
Query 420 GCTTTCTCGGTTCTCGGATGTTAAAAACAGAGCACAAGTGTTTGATCTAGAGAAAGGTAG 479
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTTGCTCGGTTCTCGGATGTTAGAAACAGAGCACAAGTGTTTGATCTAGAGAAAGGTAG 479
Query 480 TGGAAGAAGATGGACGGTTGAAAGAGACTTGGAACACTTGAAACAATCCGCTCGTAACGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGAAGAAGATGGACGGTTGAAAGAGACTTGGAACACTTGAAACAATCCGCTCGTAACGA 539
Query 540 GTCCATCGATGAGTTTGAAGTGATCCGTCTCATAGGGAAAAACCCGTTCTTGTGGCACGA 599
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 540 GTCCATCGATGAGTTTGAAGTGATCCGTGTCATAGGGAAAAACCCGTTTTTGTGGCACGA 599
Query 600 TCATTGGCCTGTTGAAGACTATGCTAAGGTCTTTGAGTGTATGGTGGTGGTTGATGAAAT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCATTGGCCAGTTGAAGACTATGCTAAGGTCTTTGAGTGTATGGTGGTGGTTGATGAAAT 659
Query 660 CTCAAGAGAAGCAGATAAGGTTGTGATGAAAATCCGAGAAGCAGGTGAGGCAGAAAGGGC 719
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 660 CTCAAGAGAAGCAGATAAAGTTGTGATGAAAATCAGAGAAGCAGGTGAGGCAGAAAGAGC 719
Query 720 AAAACTCGCATCGAAAACCGAAATCCTC-GGTCCGGTACCTTTTGTTGCGGTTCACATGA 778
||||||| ||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 720 GAAACTCGAATCCAAAACCGAAATCC-CAGGTCCGATACCTTTTGTTGCGGTTCACATGA 778
Query 779 GAATAGAGATAGATTGGATGATACATTGTAAGAAACTAGAGCAACGGAAAAAGATCTCAG 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 GGATAGAGATAGATTGGATGATACATTGTAAGAAACTAGAGCAACGGAAAAAGGTCTCAG 838
Query 839 AGATTTGTAGTAGTAAAAGAGAGATTTTGGACAGAGTAGGGAACATTTCAGGTTTAAAGA 898
|||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 839 AGATTTGTAGTAGTAAAAGAGAGATTATGGAGAGAGTAGGGAACATTTCAAGTTTAAAGA 898
Query 899 CTCCAACAGTTCTTTACCTTGCAGTAGCAGATACTCTCTTAGAAGAAAAAGAAGAAGATT 958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTCCAACAGTTCTTTATCTTGCAGTAGCAGATACTCTCTTAGAAGAAAAAGAAGAAGATT 958
Query 959 CATCGGTTTTAAGTGGTTGGAGAGACGGTTTAATACCATTTGAGAAGAAGAAGCTTGGGG 1018
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AATCGGTTTTAACTGGTTGGAGAGACGGTTTAATACCATTTGAGAAGAAGAAGCTTGGGG 1018
Query 1019 TTAAAGAGGAGATATATGGGAAGTATTCATATTTGATACAATCGGCTATAGATTACGAGG 1078
| ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1019 TAAAAGAGGAGATTTACGGGAAGTATTCGTATTTGATTCAATCGGCTATAGATTACGAGG 1078
Query 1079 TGTGTTTAAGAGCGGATGTTTTTGTTGGTAATAGCTTTTCGACTTTCTCTAGTCTCATTG 1138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1079 TGTGTTTAAGAGCGGATGTTTTTGTTGGCAATAGCTTTTCGACTTTCTCTAGTCTCATTG 1138
Query 1139 TTCTTGAGAGGACACAGAAAGCGAGAAGGTTAGGGTTTATGAGTTCTTGTAAAGATGGTG 1198
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTCTTGAAAGGACGCAGAAAGCGAGAAGGTTAGGGTTTATGAGTTCTTGTAAAGATGGTG 1198
Query 1199 GAAACAAGTGGAGATCTTATGCATATAATCTGGCTGGTGAATCAAACGGAGTTCCAAGGA 1258
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1199 AAAACAAGTGGAGATCGTATGCATATAATCTCGCTGGTGAATCAAAGGGAGTTCCAAGAA 1258
Query 1259 GATGGATGACAAATATGACTCATTCGAGCTTGCAAGCTATTAGCTATGGCTCAAATTCTG 1318
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GATGGATGACGAATATGACTCATTCGAGCTTGCAAGCTATTAGCTATGGCTCAAATTCTG 1318
Query 1319 TTTCTTGTTCTAGTGGATGAACTGGCATTTTAGGTCTAGttttttttGGCTTTTCTATAC 1378
||||||||||||||||||||| | | || | | |||||||| || ||||
Sbjct 1319 TTTCTTGTTCTAGTGGATGAAA---C-T----GG-C-A-TTTTTTTT---TT----ATAC 1360
Query 1379 AATTCGTTTATTTGTGGGGTaaaaaaaaGTTGTGTAAATTTTACAGGAAAAA 1430
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1361 AATTCGTTTATTTGTGGGGTAAAAA---GTTGTGTAAATTTTACAGGAAAAA 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5