BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05327.1
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477821 jgi|Araly1|477821|fgenesh2_kg.3__522__AT3G05327.1 1402 0.0
> Ahg477821 jgi|Araly1|477821|fgenesh2_kg.3__522__AT3G05327.1
Length=955
Score = 1402 bits (759), Expect = 0.0
Identities = 898/963 (93%), Gaps = 17/963 (2%)
Strand=Plus/Plus
Query 2 CTCTCTCTCAAAGAAAAGAATCTAAAGTAGCAAAACTTTAAC-AAAAGAGCTTCAAATTT 60
|||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |||
Sbjct 1 CTCTCTCTCAAAGAAAAGAATCTAAAGTGGCAAAACTTTAACAAAAAAAGCTTCAACTTT 60
Query 61 GCTTCGGACCTTCCATTTACACAAGC-TCCTACCTCAAGC----aaaaaaaaCAATCAGA 115
|||||| ||||||||||||| | | ||||||||||||| ||||||||||| ||||
Sbjct 61 GCTTCGCTTCTTCCATTTACACCA-CTTCCTACCTCAAGCAAAAAAAAAAAACAACCAGA 119
Query 116 GAGAAGATCTAAAGCTCTCTCAAACAATTCCAACACAAAAATGGAAACTTCTAGAAACTC 175
|||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 120 GAGATGATCTAAAGCTCTCTCAATCAATTCTAACACAAAAATGGAAACTTCTAGAAACTC 179
Query 176 CACCAACTCATCACTCTTCCAATGGTTAGGTCTTCTAGAAGATTCTGATCAGCCTCCTGA 235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 CACCAACTCATCACTCTTCCAATGGTTAGGTCTTCTAGAAGATTCAGATCAGCCTCCTGA 239
Query 236 TTCTACCCCTCCTCGAGTCATAACCCTTCTCGCTTCTACCCTCGAGAAGATGATTCAGAA 295
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 240 TTCTACCCATCCTCGAGTCATAACCCTTCTCGCTTCTATCCTTGAGAAGATGATTCAGAA 299
Query 296 GAACaaaaaaaaaTTCCACACAAGACACAACAAGGCTGATGAGATCACTATGTTCCATGG 355
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GAACAAAAAACCATTCCACATAAGACACAACAAGGATGATGAGATCACTATGTTCCATGG 359
Query 356 CTCAAAAGCACCATCGTT-AAGCATTTATCGTTACACAGAAAGAATCCATAGGTATGCTC 414
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCAAAAGCACCATCGATGAA-CATTTATCGTTACACAGAAAGAATCCATAGGTATGCTC 418
Query 415 AGTGTAGCCCTGTGTGTTTCGTTGCAGCTTTTGCCTACATCCTTAGATATCTACAGAGAC 474
|||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 AGTGTAGCCCTGCGTGCTTCGTTGCAGCTTTTGCCTACATCCTTAGGTATCTACAGAGAC 478
Query 475 CAGAGGCTACCAGTACGGCTCGTCGTCTCACATCACTCAACGTTCATCGCCTTCTCATCA 534
|||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |
Sbjct 479 CAGAGGCTACAAGTAAGGATCGTCGTCTCACATCACTCAACGTTCATCGTCTTCTCATTA 538
Query 535 CCAGTCTCTTGGTCGCAGCAAAATTCTTGGAACGCCAGTGTTATAACAACGCATATTATG 594
||||| ||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 539 CCAGTTTCTTGGTAGCAGCCAAGTTCTTGGACCGCAAGTGTTATAACAACGCATATTATG 598
Query 595 CAAAAATCGGAGGAGTGAGCACTGAAGAGATGAATAGGCTGGAGAGAACGTTCTTGGTTG 654
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 CGAAAATCGGAGGAGTGAGCACTGAAGAGATGAATAGGCTGGAGAGAACGTTCTTGTTTA 658
Query 655 ATGTTGATTTCAGGCTATATATTACAACGGAGACTTTCGAGAAACACTGTCTCATGTTGC 714
|| |||||||||| ||| | ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 659 ATATTGATTTCAGACTAAACATTACAACGGAGACTTTTGAGGAACACTGTCTCATGTTGC 718
Query 715 AGAAAGAAACGGTGCCTTGTGATTCAAGAAAACTTAGAACAGTTCTTGGAGAGATAGCTT 774
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 AGAAAGAAACGGTGCCTTGTGATTCAAGAAAACTTAGAACAGCTCTTGGAGAGATAGCTT 778
Query 775 GTAGCTGCCAAGCGATTTGATATAGCAAAACTCAAAAGACGGGGaaaaaaa-C-ATTGGT 832
|||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||
Sbjct 779 GTAGCTGCCAAGCGATTTGATATAACAAAACTCAAAAGA-GGGGAAAAAAAGCCATTGGT 837
Query 833 TAGATCTTATTTTCTTCAGTTTATTGTCAAACTAATTATGTGTTTTGTCATGAGCACAAG 892
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 838 TAGATCTTCTTTTCTTCAGTTTATTGTCAAACTAAT---GTGTTTTGTCATGAGCA-A-G 892
Query 893 AACTAAAATATATTTAAGTTTGGAATCTAAACAATTCTTTTCTTATTGCTCAAGTAATTT 952
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AACTAAAATCTAATTAAGTTTGGAATCTAAACAATTCTTTTCTTATTGCTCAAGTAATTT 952
Query 953 CTG 955
|||
Sbjct 953 CTG 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35492435727
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5