BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05330.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928119 jgi|Araly1|928119|scaffold_300576.1 2154 0.0
Ahg928123 jgi|Araly1|928123|scaffold_300580.1 1280 0.0
> Ahg928119 jgi|Araly1|928119|scaffold_300576.1
Length=1486
Score = 2154 bits (1166), Expect = 0.0
Identities = 1388/1490 (93%), Gaps = 36/1490 (2%)
Strand=Plus/Plus
Query 317 AAGAAAATATATATAGAAGATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGAT 376
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3 AAGATAA-ATATATAGAAGATGGTTGCAAGAACCCCACAAAAGCAGAGGAAAGTGGCGAT 61
Query 377 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATG 436
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 62 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACAATCAACAAGGTTGACAAATG 121
Query 437 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 122 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCCGG 181
Query 497 TGTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCA 556
||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 182 TGTGAACCTTAGCCCTCGAAGTACTAGAACTTACTTGAGGACTAGTCTTAGATGCAAGCA 241
Query 557 AGAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGC 616
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 242 AGAAACTTTAAGGATCAAGAGTGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCAGC 301
Query 617 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 361
Query 677 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAA 736
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 362 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTAGAAGCCATAGCACCAAA 421
Query 737 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 481
Query 797 CGAGACACAACAAAAATCCCGGGAACAG-A--ATCCTGAAACTGTCAGTAGCAATATCAA 853
|||||| ||| |||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 482 TGAGACAGAACGAAAATCCCGGGAACCGAACCACCCTGAAACTGTCAGTAGCAATATCAA 541
Query 854 AGCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCT 913
||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 542 AGCGAGAAGGAAGAAAGAAAAGCAGAACAGACGTTCAGGATCAGATTCTCCTCCATCTCA 601
Query 914 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCAC-----A-AGTA---AA 964
|||||||||||||||||||||||||||||||||| | ||||||| | || | ||
Sbjct 602 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCGTGTCTCCACAGAAAATAGCAGGGAA 661
Query 965 -G----GG-AAA---TAATGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACC 1015
| || ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 GGTTCAGGAAAAGGGAAATGGTGAGAATAGTTTTCGGCATTTGGCTAACAGGGTTTCACC 721
Query 1016 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGG 1075
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 722 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTGTTTATTTCTGG 781
Query 1076 TACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 1135
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TACCACTACACAACAAGCCAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 841
Query 1136 GATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAAGTTCTTAATCAAATCTCCTCC 1195
||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |
Sbjct 842 GATATCCAGCATCAAGAACAATAAAGAGACGCCACACAAGTTCTTGATCAAATCTCCTAC 901
Query 1196 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 961
Query 1256 TACAAGAAATGGCAGTAACTCGGTTCGGAAGTCACCTAGAGGCTCCAGGTCTCCGACAAG 1315
|||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||
Sbjct 962 TACAAGAAATGGCAGTAACTTGGTTCGGAGGTCACCTAAAGGCTCCAGTTCTCCGACAAG 1021
Query 1316 AA-CTGTTAACTTAGGAAAGAAGTC----A--GCGTCGATTTCTCCTATTAGAAA-TACG 1367
|| | |||||| ||||||||||||| | ||||||||||||||||||||||| | |
Sbjct 1022 AAAC-GTTAACATAGGAAAGAAGTCGCCTACCGCGTCGATTTCTCCTATTAGAAACTT-G 1079
Query 1368 GGAAAGAGGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1427
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGAAAGAAGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1139
Query 1428 AGAAATGGCAGTAACTTGGCTCGTAAGTCGTCTATTTCTCCGAAAAGAGTCACACTTCAA 1487
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1140 AGAAATGGCAGTAACTTGGCCCGTAAGTCGTCCATTTCTCCGAAAAGAGTCACGCTTCAA 1199
Query 1488 GCATTTCTTTCTCCAACAAGAAATGGTAACTTTTGTAAGAAGTCACCCAAAGCTTCGATT 1547
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1200 GCATTTCTTTCTCCCACAAGAAATGGTAACTTTTGTAAGACGTCACCCAAAGCTTTGATT 1259
Query 1548 TCTCCAACTAGGGTGTGCAACAAGTCGCAGAAGCTGTCAACGGCTGCAAAGTTCAGGAGG 1607
||||| ||||| ||| ||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 1260 TCTCCGACTAGAGTG---AACAAGTCGCAGAAGCTTTCAACAGCTGCAAAGCTCAGGAGG 1316
Query 1608 TCATTTTCGCCATCGAGACTAGCTATGAGGTTTGTATCTCCAATGAAGAGCAGGAAA-GT 1666
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 1317 TCATTTTCACCATCAAGACTAGCTATGAGGTTGGTCTCTCCAATGAAGAGCAGGAAAAGT 1376
Query 1667 GTAGCCAAGTGCGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTGGTT 1726
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1377 GTAGTCAAGTGTGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTAGTT 1436
Query 1727 CCTAAGAGATTCTCGATAAGGAGAATCTAATATGAGAGAGTTTTTAATGA 1776
|| |||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 1437 CCCAAGAGATTCTCGATGGGGAGAATCTAATAAGAGAGAGTTTTCAATGA 1486
> Ahg928123 jgi|Araly1|928123|scaffold_300580.1
Length=2446
Score = 1280 bits (693), Expect = 0.0
Identities = 820/878 (93%), Gaps = 21/878 (2%)
Strand=Plus/Plus
Query 318 AGAAAATATATATAGAAGATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGATG 377
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3 AGAAAAAATATATAGAAGATGGTTGCAAGAACCCCACAAAAGCAGAGGAAAGTGGCGATG 62
Query 378 GTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATGT 437
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 63 GTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACAATCAACAAGGTTGACAAATGT 122
Query 438 ATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGGT 497
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 123 ATGGAAAGACTGCAAGAGTTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCCGGT 182
Query 498 GTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCAA 557
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct 183 GTGAACCTTAGCCCTCGAAGTACTAGAACTTACTTGAGGACTAGTCTTAGATGCAAGCAA 242
Query 558 GAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGCT 617
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 243 GAAACTTTAAGGATCAAGAGTGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCAGCT 302
Query 618 TCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGTA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGTA 362
Query 678 AATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAAG 737
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 363 AATGAAATCTTACAAGCCTCACAGGTCACCAGAGACATTGTAGAAGCCATAGCACCAAAG 422
Query 738 AAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACCC 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACCC 482
Query 798 GAGACACAACAAAAATCCCGGGAACAGAATC--C-TGAAACTGTCAGTAGCAATATCAAA 854
|||||| ||| |||||||||||||| ||| | | ||||||||||||||||||| |||||
Sbjct 483 GAGACAGAACGAAAATCCCGGGAACCGAACCAACCTGAAACTGTCAGTAGCAATTTCAAA 542
Query 855 GCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCTA 914
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 543 GCGAGAAGGAAGAAAGAAAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCAA 602
Query 915 CAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCACA-AG--TA--A---A-G 965
|||||||||||||||| ||||||||||| |||| | |||||||| | || | | |
Sbjct 603 CAAAGGGCACGCTCAAAAATTGCGTTCACAACCGTGTCTCCACAGAAAATAGCAGGGAAG 662
Query 966 G----G--AAAT--AA-TGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACCA 1016
| | ||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 663 GTTCAGGGAAAGGGAAATGGTGAGAATAGTTTTCGGCATTTGGCTAACAGGGTTTCACCA 722
Query 1017 AAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGGT 1076
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 723 AAGCACAAACCTTGGGTTCAAAAGGCGGTTCTTTTTCCGAACCCTCTGTTTATTTCCGGC 782
Query 1077 ACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGAG 1136
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 783 ACCGCTACACAACAAGCCAAGTTCAGTAGAACAATGTCTCCGGTCATCGCCAGAAATGAG 842
Query 1137 ATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAA 1174
||||||||||||||||||| |||||| |||||| ||||
Sbjct 843 ATATCCAGCATCAAGAACAGTAAAGAGACGCCTCACAA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5