BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05330.1 Length=1950 Score E Sequences producing significant alignments: (Bits) Value Ahg928119 jgi|Araly1|928119|scaffold_300576.1 2154 0.0 Ahg928123 jgi|Araly1|928123|scaffold_300580.1 1280 0.0 > Ahg928119 jgi|Araly1|928119|scaffold_300576.1 Length=1486 Score = 2154 bits (1166), Expect = 0.0 Identities = 1388/1490 (93%), Gaps = 36/1490 (2%) Strand=Plus/Plus Query 317 AAGAAAATATATATAGAAGATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGAT 376 |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3 AAGATAA-ATATATAGAAGATGGTTGCAAGAACCCCACAAAAGCAGAGGAAAGTGGCGAT 61 Query 377 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATG 436 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 62 GGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACAATCAACAAGGTTGACAAATG 121 Query 437 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGG 496 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 122 TATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCCGG 181 Query 497 TGTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCA 556 ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 182 TGTGAACCTTAGCCCTCGAAGTACTAGAACTTACTTGAGGACTAGTCTTAGATGCAAGCA 241 Query 557 AGAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGC 616 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 242 AGAAACTTTAAGGATCAAGAGTGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCAGC 301 Query 617 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGT 361 Query 677 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAA 736 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 362 AAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTAGAAGCCATAGCACCAAA 421 Query 737 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 GAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACC 481 Query 797 CGAGACACAACAAAAATCCCGGGAACAG-A--ATCCTGAAACTGTCAGTAGCAATATCAA 853 |||||| ||| |||||||||||||| | | | |||||||||||||||||||||||||| Sbjct 482 TGAGACAGAACGAAAATCCCGGGAACCGAACCACCCTGAAACTGTCAGTAGCAATATCAA 541 Query 854 AGCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCT 913 ||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||||| Sbjct 542 AGCGAGAAGGAAGAAAGAAAAGCAGAACAGACGTTCAGGATCAGATTCTCCTCCATCTCA 601 Query 914 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCAC-----A-AGTA---AA 964 |||||||||||||||||||||||||||||||||| | ||||||| | || | || Sbjct 602 ACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCGTGTCTCCACAGAAAATAGCAGGGAA 661 Query 965 -G----GG-AAA---TAATGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACC 1015 | || ||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 662 GGTTCAGGAAAAGGGAAATGGTGAGAATAGTTTTCGGCATTTGGCTAACAGGGTTTCACC 721 Query 1016 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGG 1075 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 722 AAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTGTTTATTTCTGG 781 Query 1076 TACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 1135 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 782 TACCACTACACAACAAGCCAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGA 841 Query 1136 GATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAAGTTCTTAATCAAATCTCCTCC 1195 ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| | Sbjct 842 GATATCCAGCATCAAGAACAATAAAGAGACGCCACACAAGTTCTTGATCAAATCTCCTAC 901 Query 1196 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 CACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCC 961 Query 1256 TACAAGAAATGGCAGTAACTCGGTTCGGAAGTCACCTAGAGGCTCCAGGTCTCCGACAAG 1315 |||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||| Sbjct 962 TACAAGAAATGGCAGTAACTTGGTTCGGAGGTCACCTAAAGGCTCCAGTTCTCCGACAAG 1021 Query 1316 AA-CTGTTAACTTAGGAAAGAAGTC----A--GCGTCGATTTCTCCTATTAGAAA-TACG 1367 || | |||||| ||||||||||||| | ||||||||||||||||||||||| | | Sbjct 1022 AAAC-GTTAACATAGGAAAGAAGTCGCCTACCGCGTCGATTTCTCCTATTAGAAACTT-G 1079 Query 1368 GGAAAGAGGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1427 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GGAAAGAAGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACG 1139 Query 1428 AGAAATGGCAGTAACTTGGCTCGTAAGTCGTCTATTTCTCCGAAAAGAGTCACACTTCAA 1487 |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 1140 AGAAATGGCAGTAACTTGGCCCGTAAGTCGTCCATTTCTCCGAAAAGAGTCACGCTTCAA 1199 Query 1488 GCATTTCTTTCTCCAACAAGAAATGGTAACTTTTGTAAGAAGTCACCCAAAGCTTCGATT 1547 |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1200 GCATTTCTTTCTCCCACAAGAAATGGTAACTTTTGTAAGACGTCACCCAAAGCTTTGATT 1259 Query 1548 TCTCCAACTAGGGTGTGCAACAAGTCGCAGAAGCTGTCAACGGCTGCAAAGTTCAGGAGG 1607 ||||| ||||| ||| ||||||||||||||||| ||||| ||||||||| |||||||| Sbjct 1260 TCTCCGACTAGAGTG---AACAAGTCGCAGAAGCTTTCAACAGCTGCAAAGCTCAGGAGG 1316 Query 1608 TCATTTTCGCCATCGAGACTAGCTATGAGGTTTGTATCTCCAATGAAGAGCAGGAAA-GT 1666 |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| || Sbjct 1317 TCATTTTCACCATCAAGACTAGCTATGAGGTTGGTCTCTCCAATGAAGAGCAGGAAAAGT 1376 Query 1667 GTAGCCAAGTGCGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTGGTT 1726 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1377 GTAGTCAAGTGTGATGATCATGAGATGGTGAGTGGATTGAAACAGCGTCCGGTTTTAGTT 1436 Query 1727 CCTAAGAGATTCTCGATAAGGAGAATCTAATATGAGAGAGTTTTTAATGA 1776 || |||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 1437 CCCAAGAGATTCTCGATGGGGAGAATCTAATAAGAGAGAGTTTTCAATGA 1486 > Ahg928123 jgi|Araly1|928123|scaffold_300580.1 Length=2446 Score = 1280 bits (693), Expect = 0.0 Identities = 820/878 (93%), Gaps = 21/878 (2%) Strand=Plus/Plus Query 318 AGAAAATATATATAGAAGATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGATG 377 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 3 AGAAAAAATATATAGAAGATGGTTGCAAGAACCCCACAAAAGCAGAGGAAAGTGGCGATG 62 Query 378 GTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATGT 437 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 63 GTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACAATCAACAAGGTTGACAAATGT 122 Query 438 ATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGGT 497 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 123 ATGGAAAGACTGCAAGAGTTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCCGGT 182 Query 498 GTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCAA 557 |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| Sbjct 183 GTGAACCTTAGCCCTCGAAGTACTAGAACTTACTTGAGGACTAGTCTTAGATGCAAGCAA 242 Query 558 GAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGCT 617 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 243 GAAACTTTAAGGATCAAGAGTGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCAGCT 302 Query 618 TCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGTA 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 TCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGTA 362 Query 678 AATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAAG 737 ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 363 AATGAAATCTTACAAGCCTCACAGGTCACCAGAGACATTGTAGAAGCCATAGCACCAAAG 422 Query 738 AAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACCC 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACCC 482 Query 798 GAGACACAACAAAAATCCCGGGAACAGAATC--C-TGAAACTGTCAGTAGCAATATCAAA 854 |||||| ||| |||||||||||||| ||| | | ||||||||||||||||||| ||||| Sbjct 483 GAGACAGAACGAAAATCCCGGGAACCGAACCAACCTGAAACTGTCAGTAGCAATTTCAAA 542 Query 855 GCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCTA 914 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 543 GCGAGAAGGAAGAAAGAAAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCAA 602 Query 915 CAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCACA-AG--TA--A---A-G 965 |||||||||||||||| ||||||||||| |||| | |||||||| | || | | | Sbjct 603 CAAAGGGCACGCTCAAAAATTGCGTTCACAACCGTGTCTCCACAGAAAATAGCAGGGAAG 662 Query 966 G----G--AAAT--AA-TGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACCA 1016 | | ||| || ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 663 GTTCAGGGAAAGGGAAATGGTGAGAATAGTTTTCGGCATTTGGCTAACAGGGTTTCACCA 722 Query 1017 AAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGGT 1076 |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 723 AAGCACAAACCTTGGGTTCAAAAGGCGGTTCTTTTTCCGAACCCTCTGTTTATTTCCGGC 782 Query 1077 ACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGAG 1136 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 783 ACCGCTACACAACAAGCCAAGTTCAGTAGAACAATGTCTCCGGTCATCGCCAGAAATGAG 842 Query 1137 ATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAA 1174 ||||||||||||||||||| |||||| |||||| |||| Sbjct 843 ATATCCAGCATCAAGAACAGTAAAGAGACGCCTCACAA 880 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73285631380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5