BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05345.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340702 jgi|Araly1|340702|fgenesh1_pg.C_scaffold_3000465 848 0.0
Ahg928123 jgi|Araly1|928123|scaffold_300580.1 339 2e-92
> Ahg340702 jgi|Araly1|340702|fgenesh1_pg.C_scaffold_3000465
Length=780
Score = 848 bits (459), Expect = 0.0
Identities = 509/534 (95%), Gaps = 0/534 (0%)
Strand=Plus/Plus
Query 244 GTGAAACAATACCATCCAGATGTAAACAAAGACGGAAGCAACTCTGATATTATGATCCGT 303
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 247 GTGAAACAATACCATCCTGATGTAAACAAAGAGGGAAGCAACTCTGATATTATGATCCGT 306
Query 304 CGCATAATCCAGGCATATGAGATGTTAACAAACTATAGCCGGTCAGAGATAATTGAAGGA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CGCATAATCCAGGCATATGAGATGTTAACAAACTATAGCCGGTCAGAGATAATTGAAGGA 366
Query 364 GAATGCTTGGATCCTTTTGACCATCCAGAGTGCGAGGCACTTGACGTGTTTGTGAATGAA 423
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 367 GAATGCTTGGATCCTTTTGACCATCCAGAGTGTGAGGCACTTGACGTGTTTGTGAATGAA 426
Query 424 GTCCTATGTGTTGGAAAAAGATGTTCATACCCATGCTTTGAAACAGCTTCTCATGTCTTC 483
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 427 GTCCTGTGTGTTGGAAAAAGATGTTCATACCCATGCTTTAAAACAGCTTCTCATGTCTTC 486
Query 484 TCGTGTGATTCATCTGGGACAGCTCGAGCAATGTCCCAAGGACATGGCGAAGATTACCGT 543
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 487 TCGTGTGATTCATCTGGAACAGCTCGAGCAATGTCCCAAGGGCATGGTGAAGATTACAGT 546
Query 544 GTACAGTCTGCAGTTAATCAGTGTCCGAGAAATTGTATACATTATGTCACACCATCACAG 603
||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 547 GTACAATCTGCAGTTAATCAGTGCCCGAAAAATTGCATACATTATGTCACACCATCACAA 606
Query 604 AGAATTATTCTAGAAGAGTTACTTGACAGCGTCGTGGACAAACCTTACGATTGTTCCGCA 663
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 607 AGAATTATTCTAGAAGAGTTACTTGACAGCGTTGTGGACAAACCTTATGATTGTTCCGCC 666
Query 664 GAAGCAGAATTTCTATATGCTCTTATTGTGAAAGCTAAATTTGAGAACAATCGGTATCAG 723
|||||||| ||||| |||| ||||||||| |||||| ||| |||||||||||||||||||
Sbjct 667 GAAGCAGAGTTTCTCTATGGTCTTATTGTCAAAGCTCAATATGAGAACAATCGGTATCAG 726
Query 724 AAGCCAAAGAAGAAACAACCTGAATCTTCAGGAAAACATGTAGACTGGTTCTGA 777
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 727 AAGCCAAAGAAGAAACAATCTGAATCTTCAGGAAAACATGTAGACTGGTTATGA 780
> Ahg928123 jgi|Araly1|928123|scaffold_300580.1
Length=2446
Score = 339 bits (183), Expect = 2e-92
Identities = 216/231 (94%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 19 GGGAAAGAGAAGGTAAGAGA-T-A-CAATGGAATGTCTTCGTGTATTTGCTTCGGTACCT 75
|||| ||||||||||||||| | | ||| |||||||||||||||||||||||| ||||||
Sbjct 1914 GGGAGAGAGAAGGTAAGAGATTCAGCAAAGGAATGTCTTCGTGTATTTGCTTCCGTACCT 1973
Query 76 AAAATCTCTTTCTTCTCCAATTCAAGATACTCAACTTCTCAGCGATTCATTCCCAGTTGC 135
||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||
Sbjct 1974 AAAATCTCTTTCTTCTCCAGTTCAAGATACTCAACTACTCAACGATTCATCCCCAGTTGC 2033
Query 136 AGAGGA-AAAAACAGAGAGGATCCTCTCTCCAGCTCTTCACCGTACTCTATACTTGGCGT 194
||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2034 AGA-GAGAAAAGCAGAGAGGATCCACTCTCCAGCTCTTCACCGTACTCTATACTTGGCGT 2092
Query 195 AGAGCCAAGCTGCTCATCTTCCGAGCTAAAGGCAGCTTTTCGTGCCAAAGT 245
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2093 AGAGCCAAGCTGCTCATCTTCCGAGCTAAAGGCGGCTTTTCGTGCCAAAGT 2143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5