BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05360.1
Length=2554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477824 jgi|Araly1|477824|fgenesh2_kg.3__525__AT3G05360.1 3916 0.0
Ahg476270 jgi|Araly1|476270|fgenesh2_kg.2__1400__AT1G71390.1 182 1e-44
Ahg497292 jgi|Araly1|497292|fgenesh2_kg.158__1__AT1G71400.1 65.8 2e-09
Ahg476271 jgi|Araly1|476271|fgenesh2_kg.2__1401__AT1G71400.1 65.8 2e-09
> Ahg477824 jgi|Araly1|477824|fgenesh2_kg.3__525__AT3G05360.1
Length=2525
Score = 3916 bits (2120), Expect = 0.0
Identities = 2396/2531 (95%), Gaps = 11/2531 (0%)
Strand=Plus/Plus
Query 29 ATGATTCCAAGCCAATCTAATTCCTTTTCTGGTAGTGTTATTACCTTGTATTTCTTCCTC 88
|||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||
Sbjct 1 ATGATTCCAAGCCAATCTTGTTCCTTTTTTGGTAGTGTTGTTACCTTTTATTTCTTCCTC 60
Query 89 CTGGGTTCCCTTGTTCTACGCACTCTTGCTTCTTCTAGGCTTCACTATTGCCGCCATGAC 148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGGTTCCCTTGTTCTACGCACTCTTGCTTCTTCTAGGCTTCACTATTGCCGCCATGAC 120
Query 149 CAAAGGGATGCTCTTCTCGAGTTCAAACACGAGTTTCCGGTAAGTGAATCGAAGCCAAGT 208
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||| ||||
Sbjct 121 CAAAGGGATGCTCTTCTCGAGTTCAAACACGAGTTTCCAGTAACTGAATCAAAGCGAAGT 180
Query 209 CCATCGTTGAGTTCATGGAACAAGACTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGC 268
|| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CCGTCGTTAAGTTCATGGAACAAGAGTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGT 240
Query 269 GATGATGAA-TCTGGCGAGGTGGTTTCACTTGACCTTAGTTATGTCCTTCTCAACAACTC 327
|||| | || |||||||| ||| |||||||||| |||||||||||| |||||||||||||
Sbjct 241 GATGCT-AAGTCTGGCGATGTGATTTCACTTGATCTTAGTTATGTCGTTCTCAACAACTC 299
Query 328 TTTGAAACCAACTAGTGGTCTTTTCAAACTCCAACAACTCCAGAACCTGACTCTCAGTGA 387
||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 300 TTTGAAACCAAATAGTGGTCTTTTCAAACTCCAACAACTTCAGAACCTAACTCTTAGTGA 359
Query 388 TTGCCATCTCTATGGAGAGGTTACTTCTTCACTAGGAAACCTTTCTCGTCTCACGCATCT 447
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGCTATCTCTATGGAGAGATTACTTCTTCACTAGGAAACCTTTCTCGTCTCACGCATCT 419
Query 448 TGACCTTTCGAGTAATC-AGCTGACAGGTGAAGTTCTGGCTTCGGTCAGTAAGCTAAACC 506
||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 420 TGACCTTTCGAGTAATCTA-CTGACAGGTGAAGTTCTGGCTTCAGTCAGCAAGCTAAACC 478
Query 507 AACTTAGAGACCTTTTACTTTCCGAAAACAGTTTTAGTGGTAACATTCCTACTTCATTTA 566
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 AACTAAGAGACCTTTTACTTTCCGAAAACAGTTTTAGTGGTAATATTCCTACTTCATTTA 538
Query 567 CCAATTTAACGAAGCTTTCTAGTTTAGACATCTCTAGCAATCAGTTCACATTGGAAAATT 626
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 CCAATTTAACAAAGCTTTCTAGTTTAGACATCTCTAGCAATCAATTCACATTGGAAAATT 598
Query 627 TCTCTTTCATACTACCAAATTTAACCAGCTTGTCCTCCTTAAACGTTGCCTCTAATCACT 686
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTCTTTTATACTACCAAATTTAACCAGCTTGTCCTCCTTAAACGTTGCCTCTAATCACT 658
Query 687 TTAAATCCACGCTTCCATCTGATATGAGTGGACTCCACAACTTGAAATATTTTGATGTGC 746
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 659 TTAAATCCACCCTTCCATCTGATATGAGTGGACTCCGCAACTTGAAATATTTTGATGTGC 718
Query 747 GTGAGAATTCATTTGTCGGGACTTTTCCTACATCCTTATTCACGATTCCTTCGTTACAAA 806
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 719 GTGAGAATTCATTTGTCGGGACTTTTCCTACATCCTTGTTCACGATTCCTTCCTTACAAG 778
Query 807 TTGTTTATTTGGAAGGAAACCAGTTCATGGGACCTATAAAGTTTGGGAATATATCTTCAT 866
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 TTGTTTATTTGGAAGAAAACCAGTTCATGGGACCTATAAATTTTGGGAATATATCTTCAT 838
Query 867 CTTCTAGGCTTTGGGATCTAAACCTTGCTGATAACAAATTCGATGGGCCAATCCCTGAAT 926
| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 839 CGTCTAGGCTTCAGGATCTAAACCTTGCTCATAACAAATTCGATGGGCCAATCCCTGAAT 898
Query 927 ATATATCTGAAATTCACAGTCTCATAGTACTAGATCTTAGCCACAACAACTTAGTTGGGC 986
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 899 CTATATCTGAAATTCACAGTCTCATACTAGTAGATCTTAGCCACAACAACTTAGTTGGGC 958
Query 987 CAATCCCCACTTCTATATCAAAGTTGGTCAACCTTCAGCATCTTA-GTCTTTCAAACAAT 1045
||||||||||||| || |||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 959 CAATCCCCACTTCAATGTCAAAGTTAGTCAACCTTCAGCATCTTACG-CTTTCAAACAAT 1017
Query 1046 ACCTTGGAAGGCGAAGTGCCAGGTTGCTTATGGGGATTGATGACAGTGACACTTTCCCAC 1105
| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct 1018 AAGTTGGAAGGCGAAGTGCCTGGTTTTTTATGGGGATTGATAACAGTGACACTTTCCCAC 1077
Query 1106 AATTCTTTCAACAGTTTTGGAAAGTCATCATCCGGAGCTTTGGATGGAGAATCAATGCAG 1165
|||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||| |
Sbjct 1078 AATTCTTTCAGCAGTTTTGGAAAGTCATTATCCGGGGTTTTGGATGGAGAATCAATGTAC 1137
Query 1166 GAGTTGGATCTTGGTTCGAATTCACTTGGAGGACCTTTTCCCCATTGGATCTGCAAGCAA 1225
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1138 GAGTTGGATCTTGGTTCAAATTCACTTGGAGGACCATTTCCGCATTGGATCTGCAAGCAA 1197
Query 1226 AGGTTCTTAAAGTACTTAGACTTGTCCAACAATCTCTTCAACGGCTCAATTCCTCCTTGT 1285
|| |||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct 1198 AGATTCTTAAAGTTCTTAGATTTGTCCAATAATCGCTTCAACGGCTCAATTCCTCCTTGT 1257
Query 1286 TTGAAAAATTCCACTTATTGGCTTAAAGGGCTAGTTCTGCGTAACAACAGCTTCAGCGGA 1345
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1258 TTGAAAAATTCCAATTATTGGCTTAAAGGGCTAGTTCTGCGTAACAACAGTTTCAGCGGA 1317
Query 1346 TTTCTCCCAGACGTATTTGTCAATGCTAGCATGTTATTATCACTTGACGTTAGCTACAAC 1405
|||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1318 ATTCTTCCAGACGTATTTGTCAATGCTACCATGTTACTATCACTTGACGTTAGCTACAAC 1377
Query 1406 CGGTTGGAGGGAAAACTTCCAAAATCCCTGATCAATTGCACTGGTATGGAACTTCTGAAT 1465
||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1378 CGGTTGGAGGGGAAACTTCCAAAATCCTTGATCAATTGCACTTATATGGAACTTCTGAAT 1437
Query 1466 GTGGGAAGCAACATAATCAAGGACACTTTTCCATCCTGGTTGGTTTCTTTGCCATCATTA 1525
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1438 GTGGGAAGCAACATAATCAAGGACACTTTTCCATCCTGGTTGGGTTCTTTGCCATCATTA 1497
Query 1526 CGTGTCCTCATCCTCAGATCTAATGCATTCTATGGGTCGTTATATTATGACCACATATCT 1585
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1498 CGTGTCCTCATCCTCCGATCTAATGCATTCTATGGGTCGTTATATTATGACCACATAT-T 1556
Query 1586 T-TTGGGTTTCAACATTTGAGACTCATTGATATATCACAGAATGGCTTCAGTGGAACTTT 1644
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1557 TATTGGGTTTCAACATTTGAGACTCATTGATATATCACAAAATGGCTTCAGTGGAACTTT 1616
Query 1645 GTCACCTTTATATTTCTCCAATTGGCGTGAGATGGTGACATCTGTCTTAGAAGAAAACGG 1704
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1617 GTCACCTTTCTATTTCTCCAATTGGCGTGAGATGGTGACATCTGTCTTAGAAGATAACGG 1676
Query 1705 CTCTAATATAGGTACAGAGGATTGGTACATGGGCGAGAAAGGGCCCGAGTTCAGCCATAG 1764
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1677 CTCTAATATAGGTACAGAGGATTGGTACATGGGGGAGAAAGGGCCCGAGTTCAGCCATAG 1736
Query 1765 TAATTCGATGACTATGATATATAAAGGAGTAGAAACGGACTTCTTGCGGATCCCATATTT 1824
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TAATTCGATGACTATGATATATAAAGGAGTAGAAACGGACTTCTTGCGGATCCCATATTC 1796
Query 1825 CTTCAGAGCCATTGACTTTTCTGGAAACAGATTTTTTGGGAATATACCTGAATCCGTTGG 1884
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||
Sbjct 1797 CTTCAGAGCCATTGACTTTTCAGGAAACAAATTTTTTGGGAATATACCTGAATCCATTGG 1856
Query 1885 TTTGTTGAAGGAATTGCGTCTTCTCAATTTGTCAGGTAACTCATTCACAAGCAATATCCC 1944
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1857 TTTGTTGAAGGAATTGCGTCTTCTCAATTTGTCAGGTAACGCATTCACAAGCAATATCCC 1916
Query 1945 TCAGTCATTGGCAAATTTGACAAATCTTGAGACATTGGACCTATCCCGGAATCAGCTATC 2004
||| ||||||||||||||||||| ||| ||||| || ||||||||||||||||| | ||
Sbjct 1917 TCAATCATTGGCAAATTTGACAAGTCTCGAGACGTTAGACCTATCCCGGAATCAATTGTC 1976
Query 2005 AGGTCACATCCCTCGAGATCTTGGTAGCCTCTCTTTTCTGTCGACCATGAATTTCTCCCA 2064
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 AGGTCAGATTCCTCGAGATCTTGGTAGCCTCTCTTTTCTGTCGACCATGAATTTCTCCCA 2036
Query 2065 TAACCTTCTCGAAGGTCCAGTTCCACTAGGCACTCAGTTTCAAAGCCAACATTGTTCTAC 2124
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2037 CAACCTTCTCGAAGGTCCAGTTCCACTAGGCACACAGTTTCAAAGCCAACATTGTTCTAC 2096
Query 2125 ATTCATGGACAACCTCAGACTCTACGGTCTTGAGAAAATCTGTGGAA-AAGCTCATGCCC 2183
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||
Sbjct 2097 ATTCATGGACAACCTCAGACTCTACGGTCTCGAGAAAATCTGTGGAACAA-CTCATGTCC 2155
Query 2184 CGAGTTCTACACCACTAGAATCCGAGGAATTTTCGGAACCAGAAGAACAAGTGATTAACT 2243
||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2156 CGAATTCTACACCACGAGAATCTGAGGAATTTTCAGAACCAGAAGAACAAGTGATTAACT 2215
Query 2244 GGATAGCAGCGGCAATAGCCTACGGACCTGGTGTGTTTTGTGGATTAGTTATTGGACATA 2303
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 2216 GGATAGCAGCGGCAATAGCCTATGGACCTGGTGTCTTCTGTGGATTAGTTATTGGACATA 2275
Query 2304 TCTTCTTTACTGCACACAAACACGAGTGGTTCATGGAAAAATTCCATCGAAACAAGCGCA 2363
| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2276 TATTCTTTACTTCACACAAACACGAGTGGTTCATGGAAAAGTTCCATCGAAACAAGCGCA 2335
Query 2364 GAGTAGTCACCACAAGTGCTCGTTGAACACCATCACCTCTCACAATTTCTCTGAGTGATT 2423
|||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2336 GAGTAGTCACCATAAGTACTCGTTGAACACCATCATCTCTCACAATTTCTCTGAGTGATT 2395
Query 2424 GTGAAACGTATATGTTTGTTATGATATCTGTCAGTTGTGTTATGCATAAACTCTTTGTCT 2483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2396 GTGAAACATATATGTTTGTTATGATATCTGTCAGTTGTGTTATGCATAAACTCTTCGTCT 2455
Query 2484 TTGTAATTTTCTACTTTATGGTATTGTAAGAAACGGCTTTGGTGGTATCTGATCTTCTAT 2543
||||||||| |||||| |||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 2456 TTGTAATTT-CTACTTCATGGTATTGTAATAAACTGCTTTGGTGGTATCTGATCTTATAT 2514
Query 2544 ATGTTGGGTTG 2554
||||||| |||
Sbjct 2515 ATGTTGGCTTG 2525
> Ahg476270 jgi|Araly1|476270|fgenesh2_kg.2__1400__AT1G71390.1
Length=2307
Score = 182 bits (98), Expect = 1e-44
Identities = 272/352 (77%), Gaps = 28/352 (8%)
Strand=Plus/Plus
Query 95 TCCCTTGTTCTACGCACTCTTGCTTCTT-CTAGGCTTCACTATTGCCGCCATGACCAAAG 153
||||| || ||| | |||| |||| || || ||| |||| ||||||||| ||||||||
Sbjct 52 TCCCTCCTTATACACTCTCTAGCTT-TTCCTTTGCTCCACTTTTGCCGCCACGACCAAAG 110
Query 154 GGATGCTCTTCTCG-AGTTCAAACACGAGTTTCCGGTAAGTGAATCGAAGCCAAGTCCAT 212
| | | |||| | | | |||| | ||||||||||| | ||| || || ||||| |
Sbjct 111 GAACGGTCTT-TTGAAATTCAGAGACGAGTTTCCGATCTTTGAGTCTAAATCAAGT-C-- 166
Query 213 CGTTGAGTTCATGGAACAAGACTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGCGATG 272
|| || | || | | || | |||||||| ||||||||||||||||||||||||||||
Sbjct 167 CG-TG-G--AAT-G-A-GAG-C-AGTGATTGTTGTTTTTGGGAGGGTGTCACGTGCGATG 217
Query 273 ATGAATCTGGCGAGGTGGTTTCACTTGACCTTAGTTATGTCCTTCTCAACAACTCTTTGA 332
|| |||||||| ||||| | ||||| ||||| || | ||||||||||||||||||||
Sbjct 218 ATAAATCTGGCCAGGTGATATCACTCAACCTTCGTAACACCCTTCTCAACAACTCTTTGA 277
Query 333 AACC-AACTAGTGGTCTTTTCAAACTCCAACAACTCCAGA-ACCT-GAC-TCTC-AGTGA 387
|| | ||| ||| | ||||| ||||||||| | || | | |||| ||| | || |||
Sbjct 278 AAACTAAC-AGTAGCCTTTTTAAACTCCAATATCTTC-GTCACCTAGACCTTTCTAGT-- 333
Query 388 TTGCCATCTC-TATGGAGAGGTTACTTCTTCACTAGGAAACCTTTCTCGTCT 438
| || ||||| || |||||| || ||||||||||||||||||||||||||||
Sbjct 334 T-GCAATCTCATA-GGAGAGATTCCTTCTTCACTAGGAAACCTTTCTCGTCT 383
> Ahg497292 jgi|Araly1|497292|fgenesh2_kg.158__1__AT1G71400.1
Length=2646
Score = 65.8 bits (35), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 401 GGAGAGGTTACTTCTTCACTAGGAAACCTTTCTCGTCTCAC 441
|||||| || |||||||||||||||||||||||||||||||
Sbjct 584 GGAGAGATTCCTTCTTCACTAGGAAACCTTTCTCGTCTCAC 624
> Ahg476271 jgi|Araly1|476271|fgenesh2_kg.2__1401__AT1G71400.1
Length=2659
Score = 65.8 bits (35), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 401 GGAGAGGTTACTTCTTCACTAGGAAACCTTTCTCGTCTCAC 441
|||||| || |||||||||||||||||||||||||||||||
Sbjct 557 GGAGAGATTCCTTCTTCACTAGGAAACCTTTCTCGTCTCAC 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96292139360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5