BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05400.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477829 jgi|Araly1|477829|fgenesh2_kg.3__530__AT3G05400.1 2628 0.0
Ahg340683 jgi|Araly1|340683|fgenesh1_pg.C_scaffold_3000446 1098 0.0
> Ahg477829 jgi|Araly1|477829|fgenesh2_kg.3__530__AT3G05400.1
Length=1621
Score = 2628 bits (1423), Expect = 0.0
Identities = 1583/1654 (96%), Gaps = 35/1654 (2%)
Strand=Plus/Plus
Query 16 TAGTCTATATATCATAGGGAAGAGAAAGAAAAAACATTCTACTTCACGCAAATATTTTAT 75
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 TAGTCTATATATCATAGGGAAGAGAAAGAAAAAACATTCTACTTCACGCAAATA-TTGCT 59
Query 76 CTCTTTGTTTCTTGTTCTTAATTAGGGTTTGATTGAAGAAAATGGAAGGAGAGAATAATA 135
||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 60 CTCTTTG-TTCTTGTTCTTAATTAGGGGTTGATTGAAGAATATGGAAGGAGAGAAAAATA 118
Query 136 TGGAGAAAGGATTGTTATTGGCAAAAAAGGAAGACAGTGCAAATACAACTCCACTTCTTA 195
||||||||||||| |||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 119 TGGAGAAAGGATTATTATTGGCAAAAAAGGAAGAGACTGCAAATACAACTCCACTCCTTA 178
Query 196 TCTTCTCCACCTTCATCATTGTCTCTGCCTCCTTCACCTTTGGCGCTGCCATAGGTTATA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTTCTCCACCTTCATCATTGTCTCTGCCTCCTTCACCTTTGGCGCTGCCATAGGTTATA 238
Query 256 CTGCAGATACAATGTCCTCCATTATGTCAGACTTGGATCTTTCTCTCGCACAATTTTCGC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTGCAGATACAATGTCCTCCATTATGTCAGACTTGGATCTTTCTCTCGCACAATTTTCGC 298
Query 316 TGTTTGGTTCGTTGTCGACGTTTGGAGGAATGATCGGTGCAATATTCAGCGCCAAAGCTG 375
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTTTGGTTCGTTGACGACGTTTGGAGGAATGATCGGTGCAATATTCAGCGCCAAAGCTG 358
Query 376 CAAG-TGCCTTCGGTCATAAAATGACGTTGTGGGTGGCTGATTTATTCTGCATAACTGGT 434
| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 C-AGCTGCCTTCGGTCATAAAATGACGTTGTGGGTGGCTGATCTATTCTGCATAACTGGT 417
Query 435 TGGCTTGCAATTTCACTAGCCAAGGATATTATTTGGCTTGACATGGGGCGATTTTTGGTG 494
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 TGGCTTGCAATTGCACTAGCCAAGAATATTATTTGGCTTGACATGGGGCGATTTTTGGTG 477
Query 495 GGAATTGGAGTTGGTCTCATTAGCTACGTGGTTCCTGTATATATTGCAGAAATAACACCC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAATTGGAGTTGGTCTCATTAGCTACGTGGTTCCTGTATATATTGCAGAAATAACACCC 537
Query 555 AAGCACGTAAGAGGGGCTTTTACATTTAGCAATCAGCTTTTGCAAAACTGTGGAGTTGCA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGCACGTAAGAGGGGCTTTTACATTTAGCAATCAGCTTTTGCAAAACTGTGGAGTTGCA 597
Query 615 GTCGTATATTACTTTGGAAATTTCTTGTCATGGAGAACTTTAGCCATAATAGGTAGTATT 674
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 GTCGTATATTACTTTGGAAATTTCTTGTCATGGAGAACTTTAGCCATAATCGGTAGTATT 657
Query 675 CCATGTTGGATACAAGTTATTGGTTTGTTCTTCATACCTGAGTCTCCAAGATGGCTGGCG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCATGTTGGATACAAGTTATTGGTTTGTTCTTCATACCTGAGTCTCCAAGATGGCTGGCG 717
Query 735 AAAAAAGGTCGTGATAAAGAATGTGAAGAAGTTCTTCAAAAGTTAAGAGGAAGAAAATAC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 AAAAAAGGTCGTGATAAAGAATGTGAAGAAGTTCTTCAAAAGTTAAGAGGAAGAAGATAT 777
Query 795 GATATTGTGCCTGAAGCTTGCGAAATCAAGATTTCAGTTGAAGCTTCGAAGAAAAATTCG 854
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 GACATTGTGCCTGAAGCTTGCGAAATCAAGATTTCAGTTGAAGCTTCGAAGCAAAATTCG 837
Query 855 AATATCAACATTCGTAGTCTTTTCGAAAAGAGATATGCTCATCAACTTACAATCGGCATT 914
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 838 AATATCAATATTCGTAGTCTTTTCAAAAAGAGATATGCTCATCAACTTACAATCGGTATA 897
Query 915 GGTTTGATGCTTCTGCAACAGTTATGTGGAACTGCAGGAATAAGTTCTTACGGAAGCACT 974
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 GGTTTGATGCTTCTGCAACAGTTATGTGGAACTGCAGGAATAGGTTCTTACGGAAGCACT 957
Query 975 CTATTTAAACTTGCCGGGTTTCCTGCTCGGATTGGGATGATGGTGTTATCTCTTATCGTC 1034
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 CTATTTAAACTTGCCGGGTTTCCTGCTCGGATTGGGATGATGGTGTTGTCTCTTATCGTC 1017
Query 1035 GTACCAAAATCTTTAATGGGTCTAATCCTCGTGGATCGATGGGGAAGACGCCCACTTCTT 1094
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 GTACCAAAATCTTTAATGGGTCTAATCCTCGTGGATCGATGGGGGAGACGCCCACTTCTT 1077
Query 1095 ATGACTTCAGCGTTGGGGTTGTGTTTAAGCTGTATCACATTGGCAGTAGCGTTTGGAGTT 1154
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATGACTTCAGCGTTTGGGTTATGTTTAAGCTGTATCACATTGGCAGTAGCGTTTGGAGTT 1137
Query 1155 AAAGATGTCCCGGGAATTGGAAAAATTACTCCAATTTTCTGTTTCATTGGAATATTGTCG 1214
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAAGATGTCCCGGGGATTGGAAAAATTACTCCAATTTTCTGTTTCATTGGAATATTGTCG 1197
Query 1215 TTTACGATGATGTTCGCAATTGGAATGGGAGCGTTACCATGGATTATAATGTCTGAGATA 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTTACGATGATGTTCGCAATTGGAATGGGAGCGTTACCATGGATTATAATGTCTGAGATA 1257
Query 1275 TTTCCAATGGATATAAAGGTATTAGCTGGGAGTTTAGTGACCATAGCAAATTGGTTCACT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTTCCAATGGATATAAAGGTATTAGCTGGGAGTTTAGTGACCATAGCAAATTGGTTCACT 1317
Query 1335 GGTTGGATCGCCAACTATGCTTTCAATTTTATGTTGGTTTGGAGCCCAAGCGGGACTTTT 1394
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGTTGGATCGCCAACTACGGTTTCAATTTTATGTTGGTTTGGAGCCCAAGCGGGACTTTT 1377
Query 1395 ATAATATCCGCTATAATCTGTGGAGCAACAATTGTATTCACATGGTGCTTGGTGCCGGAG 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATAATATCCGCTATAATCTGTGGAGCAACAATTGTATTCACATGGTGCTTGGTGCCGGAG 1437
Query 1455 ACTCGAAGATTAACGTTAGAAGAAATCCAACTGTCGTTTGTCAATGTTTAGGGTTCATCG 1514
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1438 ACTCGAAGATTAACGTTAGAAGAAATCCAGCTGTCCTTTGTCAATGTTTAGGGTTCATCG 1497
Query 1515 GAAGCATTCATATATACATCATAAAGGTTGATATACTACATCATTTGCTACAT-ATAATT 1573
|||||||||||| ||||| | || | | |||||||||||| ||||||
Sbjct 1498 GAAGCATTCATA-ATACA-C-TA------------C-A--TCATTTGCTACAACATAATT 1539
Query 1574 CGGCTTCGATCGTATCCATAAATTATTTGATTAATTCAATATAATTAACTAAAGTTTCCA 1633
|| | ||| | ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1540 CG--T---ATC----C-ATAAATTATTTGATTAATTCAATATAATTAA--AGAGTTTCCA 1587
Query 1634 TTGTTTAGTTGAACTCATTGAAGATTAGTTTATT 1667
|||||| |||||||||||||||||||| ||||||
Sbjct 1588 TTGTTTGGTTGAACTCATTGAAGATTATTTTATT 1621
> Ahg340683 jgi|Araly1|340683|fgenesh1_pg.C_scaffold_3000446
Length=1386
Score = 1098 bits (594), Expect = 0.0
Identities = 1132/1385 (82%), Gaps = 63/1385 (5%)
Strand=Plus/Plus
Query 134 TATGGAGAAAGGATTGTTATTGGCAAAAAAGGAAGACAGTGCAAATACAACTCCACTTCT 193
||| ||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 24 TATTGAGAAAGGATTATTATTGGTAAATAAGGAAGAGAGTGCAAATACAACTCCACTTCT 83
Query 194 TATCTTCTCCACCTTCATCATTGTCTCTGCCTCCTTCACCTTT-GGCGCTGCCATAGGTT 252
| ||||| |||| |||||||||||||||||||||||| |||| |||| |||| ||||
Sbjct 84 TGTCTTCACCACTTTCATCATTGTCTCTGCCTCCTTC-TCTTTCGGCGTTGCCTTAGGGC 142
Query 253 ATACTGCAGATACAATGTCCTCCATTA-TGTCAGA-CTTGGATCTTTCTCTCGCACAATT 310
||||||| | ||||||| ||||||||| || ||| ||| ||||||||| || |||||||
Sbjct 143 ATACTGCTGGTACAATGGCCTCCATTATTG-AAGATCTT-GATCTTTCTATCACACAATT 200
Query 311 TTC-GCTGTTTGGTTCGTTGTCGACGTTTGGAGGAATGATCGGTGCAATATTCAGCGCCA 369
||| | | ||||||||||||| ||| |||||||||||| | ||||||||||| ||||||
Sbjct 201 TTCTG-TATTTGGTTCGTTGTTGACATTTGGAGGAATGTTGGGTGCAATATTTAGCGCC- 258
Query 370 AAG-CTGCAAG-TGCCTTCGGTCATAAAATGACGTTGTGGGTGGCTGATTTATTCTGCAT 427
| | ||| || | | || ||| ||||||||| |||||| | |||| ||||||||||
Sbjct 259 ACGATTGC-AGATTCATTTGGTTGTAAAATGACTTTGTGGATCTCTGAGGTATTCTGCAT 317
Query 428 AACTGGTTGGCTTGCAATTTCACTAGCCAAGGATATTATTTGGCTTGACATGGGGCGATT 487
|||||| |||||||||||| ||||||||||| ||||||||||||| ||| |||| |||||
Sbjct 318 AACTGGATGGCTTGCAATTGCACTAGCCAAGAATATTATTTGGCTGGACTTGGGACGATT 377
Query 488 -TTTGGTGGGAATTGGAGTTGGTCTCATTAGCTACGTGGTTCCTGTATATATTGCAGAAA 546
||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 378 CTTT-GTAGGAATTGGAGTTGGTCTCCTTAGTTACGTGGTTCCTGTATATATTGCAGAAA 436
Query 547 TAACACCCAAGCAC-GTAAGAGGGGCTTTTACATTTAGCAATCAGCTT-TTGCAAAACTG 604
|||| ||||| || || |||| ||| ||||||||| |||||| || |||||||| ||
Sbjct 437 TAACTCCCAAA-ACTGTGCGAGGCACTTATACATTTAGTAATCAG-TTGTTGCAAAATTG 494
Query 605 TGGAGTTGCAGTCGTATATTACTTTGGAAATTTCTTGTCATGGAGAA-CTTTAGCCATAA 663
||| || ||| || |||||| | ||||||||| | |||||||||| | | |||| |||
Sbjct 495 TGGGGTGGCAACCGCGTATTACCTAGGAAATTTCATATCATGGAGAATCAT-AGCCTTAA 553
Query 664 TAGGTAGTA-TTCCATG-TTGGATACAAGTTATTGGTTTGTTCTTCATACCTGAGTCTCC 721
| || | || ||||||| ||| |||||| || |||| ||||| ||| | || ||||||||
Sbjct 554 TCGGCA-TACTTCCATGCTTG-ATACAACTTGTTGGATTGTTTTTCGTCCCCGAGTCTCC 611
Query 722 AAGATGGCTGGCGAAAA-AAGGTCGTGATAAAGAATGTGAAGAAGTTCTTCA-AAAGTTA 779
||||||| |||| |||| |||||||||| |||||||||| | |||||||| ||| |||
Sbjct 612 AAGATGGTTGGC-AAAAGAAGGTCGTGACGAAGAATGTGAGGTTGTTCTTCAGAAA-TTA 669
Query 780 AGAGGAAGAA-AATACG-ATATTGTGCCTGAAGCTTGCGAAATCAAGATTTCAGTTGAAG 837
|||||| || || || |||||||| ||| || | ||||||| |||||| ||||| |
Sbjct 670 AGAGGA-GACGAAG-CGGATATTGTGAAGGAAACTAGAGAAATCATGATTTCTGTTGATG 727
Query 838 CTTCGAAGAAAAATTCGAATATCAACATTCGTAGTCTTTTCGAAAAG-AGATATGCTCAT 896
|||| | ||||||||| ||| |||||||||||| ||||| | |||| |||||
Sbjct 728 CTTCC--G-------CGAATATCAGCATGCGTAGTCTTTTC-AAAAGGAAATATTCTCAT 777
Query 897 CAACTTACAATCGGCATTGGTTTGATGCTTCTGCAACAGTTATGTGGAACTGCAGGAATA 956
|||||||||||||| | |||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 778 CAACTTACAATCGGTGTAGGTTTGATGCTTCTGCAACAGTTAAGTGGAAGTGCAGGATTA 837
Query 957 AGTTCTTACGGAAGCA-CTCTATTTAAACTTGCCGGGTTTCCTGCTCGGATTGGGATGAT 1015
||| ||||| | | | | ||| | |||||||| |||||| |||||||||||||||
Sbjct 838 GGTTATTACGTTGGTAGCG-TGTTTGATCTTGCCGGATTTCCTTCTCGGATTGGGATGAC 896
Query 1016 GGTGTTATCTCTTATCGTCGTACCAAAATCTTTAATGGGTCTAATCCTCGTGGATCGATG 1075
|||||| ||| || |||| ||||||||| || || ||||||| || || ||||| |||||
Sbjct 897 GGTGTTGTCTATTGTCGTGGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATG 956
Query 1076 GGGAAGACGCCCACTTCTTATGACTTCAGCGTTGGGGTTGTGTTTAAGCTGTATCACA-T 1134
||||||| | || ||||||||| | || || || ||||| |||||| | |||||| | |
Sbjct 957 GGGAAGAAGACCGCTTCTTATGGCATCGGCATTTGGGTTATGTTTAGGTTGTATCTCTCT 1016
Query 1135 TGGCAGTAGCGTTTGGAGTT-AAAGATGTCCC-GGGAAT--TGGAAAAATTACTCCAATT 1190
|| || ||||||||||| || |||| |||||| |||| | || ||| ||||||| | |
Sbjct 1017 TG-CATTAGCGTTTGGA-TTGAAAGGTGTCCCTGGGATTAATGTAAATGTTACTCCCACT 1074
Query 1191 TT--CTGTTTCATTGGAATATTGTCGTTTACGATGATGTTCGCAATTGGAATGGGAGCGT 1248
|| | ||| || ||||||||| | ||| ||||||||||| |||| | ||||||
Sbjct 1075 TTGGCA-TTT-ATAGGAATATTGACATTTGTTATGATGTTCGCGGCTGGATTAGGAGCGC 1132
Query 1249 TACCATGGATTATAATGTCTGAGATATTTCCAATGGATAT-AAAGGTATTAGCTGGGAGT 1307
||||||||||||||||||||||||||||||| ||||| || |||| || |||||||||||
Sbjct 1133 TACCATGGATTATAATGTCTGAGATATTTCCGATGGACATGAAAG-TAGTAGCTGGGAGT 1191
Query 1308 TTAGTGACCATAGCAAATTGGTTCACTGGTTGGATCGCCAACTA-TGCTTTCAATTTTAT 1366
||||| | |||| | |||||||| ||||||||||||| || ||| || ||||||||||||
Sbjct 1192 TTAGTAAGCATAACGAATTGGTTTACTGGTTGGATCGTCAGCTACTG-TTTCAATTTTAT 1250
Query 1367 G-TTGGTTTGGAGCCCAAGCGGGACTTTTATAATATCCGCTATAATCTGTGGAGCAACAA 1425
| || ||||||| |||| ||| |||||||| |||| |||| || ||||||||||| |
Sbjct 1251 GCTTC-TTTGGAGTCCAACCGGAACTTTTATCATATTTGCTACGATATGTGGAGCAACGA 1309
Query 1426 TTGTATTCACATGGTGCTTGGTGCCGGAGACTCGAAGATTAACGTTAGAAGAAATCCAAC 1485
|||| ||| ||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1310 TTGTCTTCGCATGGTGTTTGGTGCCTGAGACTCGAGGATTAACTTTAGAAGAAATCCAAC 1369
Query 1486 TGTCG 1490
| |||
Sbjct 1370 T-TCG 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5