BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05410.2
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903382 jgi|Araly1|903382|Al_scaffold_0003_510 760 0.0
> Ahg903382 jgi|Araly1|903382|Al_scaffold_0003_510
Length=531
Score = 760 bits (411), Expect = 0.0
Identities = 494/533 (93%), Gaps = 9/533 (2%)
Strand=Plus/Plus
Query 84 ATGTCTCTGAAACCTTATTTCTCTCTACTATACTCATCTCCCACTAATGTAAAACTT-TC 142
||||||||||||||||| | ||||| ||||||||||| ||||| |||| |||| || ||
Sbjct 1 ATGTCTCTGAAACCTTA-CT-TCTCT-CTATACTCATCACCCACAAATGCAAAA-TTCTC 56
Query 143 CAACTTCTTAATCGCTCAACAACCCTCCGGTGACCTGAAAACTACCCCGGCCGAGGAGTT 202
|||||| || || |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 57 CAACTTTTTGATTGCTCAACAACCCTCCGGTGACCGGAAAACTACCCCGGCGGAGGAGTT 116
Query 203 TTCTCCACTGGTTGAGAAATTCAACCGACGGCTTCTTCTGGGTGTAGGATCGTCCTCTGT 262
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 TTCTCCGCTGGTTGAGAAATTCAACCGGCGGCTTCTTCTGGGTGTAGGATCGTCCTCTGT 176
Query 263 TCTTGCGATTGGTGCGAATTTCGGAGGAACCACGAGTTTTATACTCGGTTTATCGCCAGG 322
||||||| ||||||||||||||||||||| ||||||||| | || ||||| ||||| ||
Sbjct 177 TCTTGCGGTTGGTGCGAATTTCGGAGGAATCACGAGTTTCGTGCTTGGTTTGTCGCC-GG 235
Query 323 GA-TAGGCCGGAATCTAAAACTCGACGTCATTTATCCGATTGGAGGATATAGCAGATGTA 381
| | ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 236 AAGTTGGCCGTAATCTGAAACTCGACGTCGTTTATCCGATTGGAGGATATAGCAGATGTA 295
Query 382 TCGATACGGTTGAAGGATTCGAATTTATATATCCGGCTACGTGGGTTGGAGACCAGACGC 441
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 296 TCGATACGGTTGAAGGATTCGAATTTATATATCCGGCTACGTGGGTCGGAGACCAGACGC 355
Query 442 TTTTGTATAGAGCGGCGGAGAAGTCAGAACGGGAGAATTCGCTAGACCTTCCTCCGGCAA 501
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 TTTTGTATAGAGCGGCGGAGAAATCAGAACGGGAGAATTCGCTAGACCTTCCTCCGGCAA 415
Query 502 GAAACAGTCG-CCGGAAAAACGTTAATGAACCGGTTGTTGCATTTGGACCGCCCGGTTCG 560
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 416 GAAACAGTCGTCCG-AAAAATGTTAATGAACCGGTTGTTGCATTTGGACCGCCCGGTTCG 474
Query 561 ACCGGTGAGCTTAATGTCAGTGTTATCGTTTCCCCTGTCTCACCCAGTTTCTC 613
||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 475 ACCGGCGAGCTCAATGTCAGTGTTATCGTCTCCCCTGTCTCTCCCAGTTTCTC 527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5