BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05410.2 Length=1005 Score E Sequences producing significant alignments: (Bits) Value Ahg903382 jgi|Araly1|903382|Al_scaffold_0003_510 760 0.0 > Ahg903382 jgi|Araly1|903382|Al_scaffold_0003_510 Length=531 Score = 760 bits (411), Expect = 0.0 Identities = 494/533 (93%), Gaps = 9/533 (2%) Strand=Plus/Plus Query 84 ATGTCTCTGAAACCTTATTTCTCTCTACTATACTCATCTCCCACTAATGTAAAACTT-TC 142 ||||||||||||||||| | ||||| ||||||||||| ||||| |||| |||| || || Sbjct 1 ATGTCTCTGAAACCTTA-CT-TCTCT-CTATACTCATCACCCACAAATGCAAAA-TTCTC 56 Query 143 CAACTTCTTAATCGCTCAACAACCCTCCGGTGACCTGAAAACTACCCCGGCCGAGGAGTT 202 |||||| || || |||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 57 CAACTTTTTGATTGCTCAACAACCCTCCGGTGACCGGAAAACTACCCCGGCGGAGGAGTT 116 Query 203 TTCTCCACTGGTTGAGAAATTCAACCGACGGCTTCTTCTGGGTGTAGGATCGTCCTCTGT 262 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 117 TTCTCCGCTGGTTGAGAAATTCAACCGGCGGCTTCTTCTGGGTGTAGGATCGTCCTCTGT 176 Query 263 TCTTGCGATTGGTGCGAATTTCGGAGGAACCACGAGTTTTATACTCGGTTTATCGCCAGG 322 ||||||| ||||||||||||||||||||| ||||||||| | || ||||| ||||| || Sbjct 177 TCTTGCGGTTGGTGCGAATTTCGGAGGAATCACGAGTTTCGTGCTTGGTTTGTCGCC-GG 235 Query 323 GA-TAGGCCGGAATCTAAAACTCGACGTCATTTATCCGATTGGAGGATATAGCAGATGTA 381 | | ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 236 AAGTTGGCCGTAATCTGAAACTCGACGTCGTTTATCCGATTGGAGGATATAGCAGATGTA 295 Query 382 TCGATACGGTTGAAGGATTCGAATTTATATATCCGGCTACGTGGGTTGGAGACCAGACGC 441 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 296 TCGATACGGTTGAAGGATTCGAATTTATATATCCGGCTACGTGGGTCGGAGACCAGACGC 355 Query 442 TTTTGTATAGAGCGGCGGAGAAGTCAGAACGGGAGAATTCGCTAGACCTTCCTCCGGCAA 501 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 356 TTTTGTATAGAGCGGCGGAGAAATCAGAACGGGAGAATTCGCTAGACCTTCCTCCGGCAA 415 Query 502 GAAACAGTCG-CCGGAAAAACGTTAATGAACCGGTTGTTGCATTTGGACCGCCCGGTTCG 560 |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 416 GAAACAGTCGTCCG-AAAAATGTTAATGAACCGGTTGTTGCATTTGGACCGCCCGGTTCG 474 Query 561 ACCGGTGAGCTTAATGTCAGTGTTATCGTTTCCCCTGTCTCACCCAGTTTCTC 613 ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 475 ACCGGCGAGCTCAATGTCAGTGTTATCGTCTCCCCTGTCTCTCCCAGTTTCTC 527 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37360458660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5