BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05420.2
Length=2315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477830 jgi|Araly1|477830|fgenesh2_kg.3__531__AT3G05420.2 3803 0.0
Ahg489567 jgi|Araly1|489567|fgenesh2_kg.6__2701__AT5G27630.1 1391 0.0
> Ahg477830 jgi|Araly1|477830|fgenesh2_kg.3__531__AT3G05420.2
Length=2322
Score = 3803 bits (2059), Expect = 0.0
Identities = 2242/2328 (96%), Gaps = 22/2328 (1%)
Strand=Plus/Plus
Query 4 TTGTATCTTTGAACAAACGAAACTAGAAAACGCCTATCTCTGC-TCATTGGCTTCTCCAT 62
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 1 TTGTATCTTTGAACAAACGAAACTAGAAAACGCCTATCGCTGCTTC-TTGGCTTCTCCAT 59
Query 63 CTCCGATCAAATCCGCGGTCGTAGTCAGAGAGAGAGACAAATGGCTATGCCTAGGGCAAC 122
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 60 CTCCGATCAAATCCGCGGTCGAAGTCAGAGAGAAAGACAAATGGCTATGCCTAGGGCAAC 119
Query 123 CTCTGGTCCCGCTTACCCGGAGAGGTTCTACGCTGCTGCATCTTATGTCGGTCTCGACGG 182
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 120 CTCTGGTCCCGCTTACCCGGAGAGGTTCTACGCCGCCGCATCTTACGTCGGTCTCGACGG 179
Query 183 ATCTGATTCGTCGGCGAAAAACGTCATCTCGAAATTCCCCGATGATACTGCACTACTTCT 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 ATCTGATTCGTCGGCGAAAAACGTCATCTCGAAATTCTCCGATGATACTGCACTACTTCT 239
Query 243 CTATGCGCTATACCAGCAGGCTACTGTAGGACCATGCAACACTCCGAAACCTAGTGCCTG 302
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CTATGCGCTGTACCATCAGGCTACTGTAGGACCATGCAACACTCCGAAACCTAGTGCATG 299
Query 303 GAGACCAGTGGAGCAAAGCAAATGGAAAAGTTGGCAGGGGCTCGGAACCATGCCCTCCAT 362
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 300 GAGACCAGTGGAGCAAAGCAAATGGAGAAGTTGGCAGGGACTCGGAACCATGCCCTCCAT 359
Query 363 TGAGGCAATGCGTCTCTTTGTGAAAATTCTGGAGGAAGATGATCCTGGTTGGTATTCGAG 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 360 TGAGGCAATGCGTCTCTTTGTGAAAATTCTGGAGGAAGATGATCCGGGTTGGTATTCAAG 419
Query 423 GGCATCTAATGATATTCCAGATCCTGTTGTAGATGTCCAAATTAATCAGAGAGCAAAAGA 482
||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 420 GGCATCTAATGATATTCCAGATCCTGTCGTAGATGTCCAAATTAATCAGAGAACGAAAGA 479
Query 483 TGAGCCTGTTGTTGAGAATGGGAGCACATTTAGTGAGACAAAAACAATTTCTACGGAGAA 542
||||||||||||||||||||||| | ||||| |||||||||| ||||||||||| |||||
Sbjct 480 TGAGCCTGTTGTTGAGAATGGGAACTCATTTGGTGAGACAAAGACAATTTCTACTGAGAA 539
Query 543 TGGACGTTTGGCTGAAACCCAAGATAAAGATGTAGTCTCAGAAGACTCAAATACTGTTTC 602
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGACGTTTGGCTGAAACCCAGGATAAAGATGTAGTCTCAGAAGACTCAAATACTGTTTC 599
Query 603 TGTATATAACCAGTGGACTGCACCCCAAACATCAGGTCAGC-GTCCAAAAGCTCGTTACG 661
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 600 TGTATATAACCAGTGGACTGCACCCCAAACATCAGGTCAGCAG-CCAAAAGCCCGTTACG 658
Query 662 AGCATGGCGCAGCAGTTATTCAAGATAAGATGTATATATATGGTGGAAATCACAATGGCC 721
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCATGGAGCAGCAGTTATTCAAGATAAGATGTATATATATGGTGGAAATCACAATGGCC 718
Query 722 GTTACCTTGGTGATCTTCATGTTCTAGATTTAAAAAGTTGGACTTGGTCAAGAGTTGAAA 781
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 719 GTTACCTTGGTGATCTTCATGTTCTAGATTTAAAAAATTGGAGTTGGTCAAGAGTTGAAA 778
Query 782 CCAAGGTTGCAACAGAAT-CTCAGGAAACATCAACTCCGACATTGTTAGCTCCTTGTGCT 840
||||||||||||| | || | ||||||||||||||||| ||||| |||||||||||||||
Sbjct 779 CCAAGGTTGCAACTG-ATGCACAGGAAACATCAACTCCAACATTATTAGCTCCTTGTGCT 837
Query 841 GGTCATTCTTTGATAGCATGGGACAACAAGCTGCTGTCTATCGGTGGTCACACAAAGGAT 900
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 838 GGTCATTCTTTGATAGCATGGGACAACAAGCTGCTTTCTATCGGTGGTCATACAAAGGAT 897
Query 901 CCCTCAGAATCTATGCAAGTGAAGGTCTTTGATCCCCATACCATTACATGGTCAATGTTA 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 CCCTCAGAATCTATGCAAGTGAAGGTCTTTGATCCCCATACCAGTACATGGTCAATGTTA 957
Query 961 AAGACATATGGAAAACCACCGGTTTCACGTGGAGGCCAGTCAGTTACAATGGTGGGTAAA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGACATATGGAAAACCACCGGTTTCACGTGGAGGCCAGTCAGTTACAATGGTGGGTAAA 1017
Query 1021 ACCTTGGTGATATTTGGCGGGCAAGATGCAAAGAGATCACTTCTGAACGATTTGCATATA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACCTTGGTGATATTTGGCGGGCAAGATGCAAAGAGATCACTTCTGAACGATTTGCATATA 1077
Query 1081 CTTGACCTAGACACGATGACCTGGGATGAGATAGATGCCGTGGGTGTATCTCCATCTCCG 1140
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTTGATCTAGACACGATGACCTGGGATGAGATAGATGCCGTGGGTGTATCTCCATCTCCG 1137
Query 1141 AGGTCTGATCATGCTGCTGCAGTGCATGCAGAACGGTT-CCTTCTTATCTTTGGTGGCGG 1199
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 1138 AGGTCTGATCATGCTGCTGCAGTGCATGCAGAAC-GTTACCTTCTTATCTTTGGTGGGGG 1196
Query 1200 CTCACATGCAACCTGTTTCGATGACCTGCATGTCCTTGATTTGCAAACTATGGAGTGGTC 1259
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1197 ATCACATGCAACCTGTTTCGATGACCTGCATGTCCTTGATTTGCAGACTATGGAGTGGTC 1256
Query 1260 AAGACCAGCACAGCAAGGTGATGCACCAACTCCAAGAGCTGGACATGCTGGCGTGACAAT 1319
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAGACCAGCACAACAAGGTGATGCACCAACTCCAAGAGCTGGACATGCTGGCGTGACAAT 1316
Query 1320 TGGGGAGAACTGGTTTATTGTTGGTGGCGGTGATAACAAGAGTGGGGCATCGGAGAGTGT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGGGGAGAACTGGTTTATTGTTGGTGGCGGTGATAACAAGAGTGGGGCATCGGAGAGTGT 1376
Query 1380 TGTACTAAACATGTCAACTCTTGCATGGTCGGTCGTTGCTTCAGTTCAAGGACGTGTACC 1439
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1377 TGTACTAAACATGTCAACTCTTTCATGGTCGGTAGTTGCTTCAGTTCAAGGACGTGTACC 1436
Query 1440 TCTTGCTAGCGAGGGATTAAGTTTAGTGGTGAGTTCATACAATGGTGAAGATGTACTAGT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCTTGCTAGCGAGGGATTAAGTTTAGTGGTGAGTTCATACAATGGTGAAGATGTACTAGT 1496
Query 1500 CGCTTTTGGTGGATACAATGGACGTTACAATAACGAAATTAATCTTCTTAAACCAAGCCA 1559
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1497 CGCTTTTGGTGGATACAATGGACGTTACAACAACGAAATTAATCTTCTTAAACCAAGCCA 1556
Query 1560 CAAATCAACATTGCAAACAAAGACTCTGGAAGCGCCTTTGCCAGGTAGTCTTTCTGCTGT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CAAATCAACATTGCAAACAAAGACTCTGGAAGCGCCTTTGCCAGGTAGTCTTTCTGCTGT 1616
Query 1620 TAATAATGCCACAACCAGAGACATTGAGTCTGAGGTTGAGGTGAGCCAAGAAGGCAGGGT 1679
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1617 TAATAACGCCACAACCAGAGACATTGAGTCTGAGGTTGAGGTGAGCCAAGAAGGCAGAGT 1676
Query 1680 ACGGGAAATTGTCATGGACAATGTTAACCCTGGATCAAAGGTTGAAGGAAACAGCGAACG 1739
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1677 ACGGGAAATTGTCATGGACAATGTCAACCCTGGATCAAAGGTTGAAGGAAACAGCGAACG 1736
Query 1740 CATTATTGCGACTATTAAATCTGAGAAGGAAGAGCTGGAGGCATCACTGAACAAAGAGAG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CATTATTGCGACTATTAAATCTGAGAAGGAAGAGCTGGAGGCATCACTGAACAAAGAGAG 1796
Query 1800 GATGCAGACTCTCCAACTAAGGCAAGAGTTAGGAGAAGCAGAATTACGAAACACAGATTT 1859
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1797 GATGCAGACTCTCCAACTAAAGCAAGAGTTAGGAGAAGCAGAATTACGAAACACAGATTT 1856
Query 1860 GTACAAGGAACTTCAATCTGTTCGTGGCCAACTTGCAGCCGAACAATCAAGGTGTTTCAA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 GTACAAGGAACTTCAATCTGTTCGTGGCCAACTTGCAGCCGAACAATCAAGGTGTTTCAA 1916
Query 1920 ACTGGAGGTTGATGTTGCAGAGCTAAGACAAAAGCTTCAAACATTGGAAACACTACAGAA 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1917 ACTGGAGGTTGATGTTGCAGAGCTAAGACAAAAGCTTCAAACATTGGAAACACTACAAAA 1976
Query 1980 GGAACTCGAACTCCTGCAACGTCAAAAGGCTGCCTCAGAACAAGCTGCAATGAACGCTAA 2039
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1977 GGAACTCGAACTCCTGCAGCGTCAAAAGGCAGCCTCAGAACAAGCTGCAATGAACGCTAA 2036
Query 2040 ACGACAGGGCTCGGGTGGCGTATGGGGCTGGCTCGCTGGAAGCCCTCAGGAAAAAGATGA 2099
||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2037 ACGACAGAGCTCGGGTGGCGTATGGGGCTGGCTTGCTGGAAGCCCTCAGGAAAAGGATGA 2096
Query 2100 TGATTCGCCTTGATCATTTTTGGTCCGGTAATGCCATTTTCCTCCGGACGAT-ATTTGCT 2158
||||||||||||||||||||||||| |||| ||||||||||||| || |||| ||| |||
Sbjct 2097 TGATTCGCCTTGATCATTTTTGGTCTGGTATTGCCATTTTCCTCAGGTCGATCATT-GCT 2155
Query 2159 TTCAGTAAAGAAATATATATAGttttttttGTCTGAGTCTCTCGCATTGTTTCTTCTTCC 2218
||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |||
Sbjct 2156 TTCAGTAAAGAAATATATATAGTATTTTT-GTCTGAGTCCCTCACATTGTTTCTTCGTCC 2214
Query 2219 AATAAGATAtttttttA---G-C-------GAGCTTTGATTACTACCGATGTTTAGCTTT 2267
|||||||||||| || | | ||||||||||||||| ||||||||||||||
Sbjct 2215 AATAAGATATTTCAATACCAGTCTTTTTTTGAGCTTTGATTACTATCGATGTTTAGCTTT 2274
Query 2268 GTTCTCTGTTATACAAGTGATTCACCAGAATATTCGTTAACTTTTTTG 2315
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 GTTCTCTGTTATACAAGTGATTCACCAGAATATTCGTTAACTTTTTTG 2322
> Ahg489567 jgi|Araly1|489567|fgenesh2_kg.6__2701__AT5G27630.1
Length=2177
Score = 1391 bits (753), Expect = 0.0
Identities = 1301/1563 (83%), Gaps = 48/1563 (3%)
Strand=Plus/Plus
Query 123 CTCTGGTCC-CGCTTACCCGGAGAGGTTCTACGCTGCTGCATCTTATGTCGGTCTCGACG 181
|||||| || |||||||||||||| |||||||| || ||||| || || || |||||||
Sbjct 84 CTCTGG-CCTTGCTTACCCGGAGAGATTCTACGCCGCCGCATCGTACGTTGGCCTCGACG 142
Query 182 GATCTGATTCGTCGGCGAAA-AACGTCATCTCGAAATTCCCCGATGATA-CTGCACTACT 239
||||| | ||||||| |||| ||| ||| ||| |||||| || | |||| || | | ||
Sbjct 143 GATCTCAATCGTCGGTGAAACAAC-TCAGCTCCAAATTCTCCAACGATACCT-CTTTGCT 200
Query 240 TCTCTATGCGCTATACCAGCAGGCTACTGTAGGACCATGCAACACTCCGAAACCTAGTGC 299
|||||| ||| | |||||||||||||| ||||||| ||||| | ||| |||||||||||
Sbjct 201 TCTCTACGCGTTGCACCAGCAGGCTACTCTAGGACCTTGCAATATTCCAAAACCTAGTGC 260
Query 300 CTGGAGA-CCAGTGGAGCAAAGCAAATGGAAAAGTTGGCAGGGGCTCGGAACCATGCCCT 358
|||| | ||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 261 GTGGA-ATCCAGTAGAGCAAAGCAAATGGAAAAGTTGGCAGGGGCTTGGAACCATGCTCT 319
Query 359 CCATTGAGGCAATGCGTCTCTTTGTGAAAATTCTGGAGGAAGATGATCCTGGTTGGTATT 418
||||||| |||||||||||||||||||||||| | ||| |||| |||||||| ||||||
Sbjct 320 CCATTGAAGCAATGCGTCTCTTTGTGAAAATTTTAGAGAAAGAAGATCCTGGCTGGTATC 379
Query 419 CGAGGGCATCTAA-TGATATTCCAGATCCTGTTGTAGATGTCCAAATTAATCAGAGAGCA 477
| ||||||||||| | | ||| ||| |||| ||||||||||||| | | | || | ||
Sbjct 380 CAAGGGCATCTAACTC-TGTTCTAGAGCCTGCTGTAGATGTCCAAGTCAGT-AGC-A-CA 435
Query 478 AAAGATGAGCCT-GTTGTTGAGAATGGGAGCA-CATTTAGTGAGACAAAAACAATTTCTA 535
|| | |||||| ||| |||||| ||| ||| ||||| |||||||||| || |||||||
Sbjct 436 AAGGCCGAGCCTAGTT-TTGAGAGTGG-AGCTTCATTTGGTGAGACAAAGACGATTTCTA 493
Query 536 CGGAGAATG-GACGTTTGGCTGAAACCCAAGATAAAGATGTAGTCTCAGAAGACTCAAAT 594
| ||| ||| | || ||| | | ||| ||||||||||||||||| | |||||| |||||
Sbjct 494 CCGAGGATGAG-CGCTTGACGGTAACGCAAGATAAAGATGTAGTTTTGGAAGACCCAAAT 552
Query 595 ACTGTTTCTGTATATAACCAGTGGACTGCACCCCAAACATCAGGTCAGCGTCCAAAAGCT 654
||||||||||| ||||| ||||||||||||| | |||| ||||||||| |||||||||
Sbjct 553 ACTGTTTCTGTGTATAATAAGTGGACTGCACCACGAACACCAGGTCAGCCACCAAAAGCT 612
Query 655 CGTTACGAGCATGGCGCAGCAGTTATTCAAGATAAGATGTATATATATGGTGGAAATCAC 714
|| || |||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||
Sbjct 613 CGGTATGAGCATGGAGCAGCGGTTATTCAGGATAAGATGTATATGTATGGTGGAAACCAC 672
Query 715 AATGGCCGTTACCTT-GGTGATCTTCATGTTCTAGATTTAAAAAGTTGGACTTGGTCAAG 773
||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 673 AATGGGCGTTAT-TTAGGTGATCTTCATGTTCTAGATTTAAAAAACTGGACTTGGTCAAG 731
Query 774 AGTTGAAACCAAGGTTGCAACAGAATCTCAGGAAACATCAACTCC-GACATTGTTAGCTC 832
||||||||||||||||| ||| ||||| |||||||| ||| |||| | || || |||
Sbjct 732 AGTTGAAACCAAGGTTGTAACTGAATCACAGGAAACTTCATCTCCAG-CAAAACTAACTC 790
Query 833 -CTTGTGCTGGTCATTCTTTGATAGCATGGGACAA-CAAGCTGCTGTCTATCGGTGGTCA 890
|| |||||||||||||||||||| ||||||| || |||||| ||||| | ||||||||
Sbjct 791 ACT-GTGCTGGTCATTCTTTGATACCATGGGA-AAGCAAGCTTTTGTCTGTAGGTGGTCA 848
Query 891 CACAAAGGATCCCTCAGAAT-CTATGCA-AGTGAAGGTCTTTGATCCCCATACCA-TTAC 947
||||||||||||||||||| | ||| | |||||||| ||||||| | || | || |
Sbjct 849 TACAAAGGATCCCTCAGAATAC-ATG-ATAGTGAAGGAATTTGATCTGCGTAGCTGTT-C 905
Query 948 ATGGTCAATGTTAAAGACATATGGAAAACCACCGGTTTCACGTGGAGGCCAGTCAGTTAC 1007
||||||||| ||||||||| | || || |||||| |||| |||||||| ||||||| ||
Sbjct 906 ATGGTCAATCTTAAAGACACACGGGAAGCCACCGATTTCCCGTGGAGGTCAGTCAGCGAC 965
Query 1008 AATGGTGGGTAAAACCTTGGTGATATTTGGCGGGCAAGATGCAAAGAGATCACTTCTGAA 1067
| ||||| |||| ||||||||||||||| || || |||| ||||| ||| || || ||
Sbjct 966 CCTTGTGGGAAAAAGCTTGGTGATATTTGGTGGCCAGGATGGAAAGAAATCGCTCCTAAA 1025
Query 1068 CGATTTGCATATACTTGACCTAGACACGATGACCTGGGATGAGATAGATGCCGTGGGTGT 1127
|||||||||||||||| | ||||| || ||||||||||||||||| |||| ||||||| |
Sbjct 1026 CGATTTGCATATACTTCATCTAGATACCATGACCTGGGATGAGATGGATGTCGTGGGT-T 1084
Query 1128 ATC-TCCATCTCCGAGGTCTGATCATGCTGCTGCAGTGCATGCAGAACGGTT-CCTTCTT 1185
|| |||| |||| |||||||||||||||||||||||||| || || || || ||||||
Sbjct 1085 CTCCTCCAACTCCAAGGTCTGATCATGCTGCTGCAGTGCACGCTGAGCG-TTACCTTCTA 1143
Query 1186 ATCTTTGGTGGCGGCTCACATGCAACCTGTTTCGATGACCTGCATGTCCTTGATTTGCAA 1245
||||||||||| || |||||| |||| ||||| ||||| ||||||||||| ||| |||||
Sbjct 1144 ATCTTTGGTGGAGGATCACATACAACTTGTTTTGATGATCTGCATGTCCTCGATCTGCAA 1203
Query 1246 ACTATGGAGTGGTCAAGACC-AGCACAGCAAGGTGATGCACCAACTCCAAGAGCTGGACA 1304
||||||||||||||||||| | |||| |||||||| |||||||||||| | ||||||||
Sbjct 1204 ACTATGGAGTGGTCAAGACATA-CACAACAAGGTGAAGCACCAACTCCACGTGCTGGACA 1262
Query 1305 TGCTGGCGTGACAATTGGGGAGAACTGGTTTATTGTTGGTGGCGGTGATAACAAGAGTGG 1364
|| || ||||||||||| || || |||| |||||||||||| || |||||||| | ||
Sbjct 1263 CGCCGGTGTGACAATTGGTGAAAATTGGTATATTGTTGGTGGTGGAGATAACAAAACCGG 1322
Query 1365 GGCATCGGAGAGTGTTGTACTAAACATGTCAACTCTTGCATGGTCGGTCGTTGCTTCAGT 1424
|||||| ||| ||||||| |||| |||||||||||||| ||||| || || |||||||
Sbjct 1323 GGCATCTAAGACTGTTGTATTAAATATGTCAACTCTTGCGTGGTCAGTAGTCACTTCAGT 1382
Query 1425 TCAAGGACGTGTACCTCTTGCTAGCGAGGGATTAAGTTTAGTGGTGAGTTCATACAATGG 1484
||||||| ||||||||| ||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 1383 CCAAGGACATGTACCTCTCGCTAGTGAGGGATTGAGTTTAGTTGTGAGCTCATACAATGG 1442
Query 1485 TGAAGATGTACTAGTCGCTTTTGGTGGATACAATGGACGTTACAATAACGAAATT-AATC 1543
||||| || | || ||||||||||||||||| |||| |||||| ||| ||| | |||
Sbjct 1443 CGAAGACATAGTTGTTGCTTTTGGTGGATACAACGGACATTACAACAAC-AAAGTGAATG 1501
Query 1544 TTCTTAAACCAAGCCACAAATCAA-CATTGCAAA-CAAAGACTCTGGAAGCGCCT--T-T 1598
|||||||||||||||||||||||| | ||| ||| | |||| | ||| ||| || | |
Sbjct 1502 TTCTTAAACCAAGCCACAAATCAAGC-TTG-AAATCCAAGATTATGGGAGCTTCTGCTGT 1559
Query 1599 GCCAGGTAGTCTTTCTGCTGTTAATAATGCCACAACCAGAGACATTGAGTCTGAGGTTGA 1658
||||| |||| |||| ||||||||||||||||| || ||||| ||||||| |||| | ||
Sbjct 1560 GCCAGATAGTTTTTCCGCTGTTAATAATGCCACGACTAGAGATATTGAGTTTGAGATCGA 1619
Query 1659 GGT 1661
|||
Sbjct 1620 GGT 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87188570805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5