BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05430.1
Length=3053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317405 jgi|Araly1|317405|fgenesh1_pm.C_scaffold_3000421 1687 0.0
> Ahg317405 jgi|Araly1|317405|fgenesh1_pm.C_scaffold_3000421
Length=2664
Score = 1687 bits (913), Expect = 0.0
Identities = 1162/1278 (91%), Gaps = 34/1278 (3%)
Strand=Plus/Plus
Query 1563 TCAGGAGAAATTTGAACCAATGAAAAGCCTTAAACAAGATGAGACTGGAACAAATTCTAG 1622
||| ||||||||| || || ||||| ||||||||||||| |||||||| || || |||||
Sbjct 1107 TCATGAGAAATTTAAAGCAGTGAAATGCCTTAAACAAGAAGAGACTGGCACGAACTCTAG 1166
Query 1623 ATCTAACAAAAGCTCTCTCAAGCTTTTTAGTGGTGGGAAATTTTCTGCAGGAGTTGGGAT 1682
||||||| || |||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1167 ATCTAACGAAGGCTCTCTCCAGCCTTTTATTGGTGGGAAATTTTCTGCAGGAGTTGGGAT 1226
Query 1683 CAAGAAAGGCAATGTCGTGAAACGGTCTTCTGGCGAAATGAAATCTGAGAATTGTCCTCC 1742
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1227 CAAGAAAGGCAATGTCGTGAAACGGTCTTCTGGCGAAATGGAATCTGAGAATGGTCCTCC 1286
Query 1743 AGAACCAAAGAAAAAGAAGAAAGAGTATGTGTCAGAGCTGAACCGTGACACTCCAGATAA 1802
||| |||||||| ||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1287 AGAGCCAAAGAAGAAGAAGAAAGAGTCTTTTTCAGAGCTGAACCGTGACACTCCAGATAA 1346
Query 1803 GAGGAAAGCGTTATCTTCTGGAGAAGCTTGGGCCAAGAAATCGTCACAAGTAGATTCAGC 1862
||||||||| ||||||||||| ||| |||||||||||||||| |||||||| ||||||||
Sbjct 1347 GAGGAAAGCTTTATCTTCTGGGGAATCTTGGGCCAAGAAATCATCACAAGTGGATTCAGC 1406
Query 1863 AAAGAGACGCTCCAATATGTTGA---T-AG----T-GAAACTTGATGGTCTGCAGCTGTT 1913
|||||||| |||||||||||||| | || | |||||||||||||||||| ||||
Sbjct 1407 AAAGAGACACTCCAATATGTTGATTGTGAGAAACTCTAAACTTGATGGTCTGCAGATGTT 1466
Query 1914 GAGTAATTTGCTAGCTCTCTCGCTTGACCCTCTCTTTGGATCCTCAGATAGAAGTTCTTT 1973
||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 1467 GAGTAATTTGCAAGCTCTCTCGCTTGACTATTTCTTTGGATCCTCAGATAGAAGTTCTAT 1526
Query 1974 TAGAGTTATAAGGCAGTTCTTTTTTCATTTCCGATCACATGTTTACCAGAAAAGCTTGGC 2033
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1527 TAGAGCTGTAAGGCAGTTCTTTCTTCATTTCCGATCACATGTTTACCAGAAAAGCTTGGC 1586
Query 2034 CACATCTCC-TTCCGCAACAAAACTGTCAAAATCTGCAAAGACTTTGTGCAGAGCTAATG 2092
||||||||| || | | ||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 1587 CACATCTCCGTT-CACTACAGTACTGTCAAAATCTGCGAAGACTTTGTGCAGAACTAATG 1645
Query 2093 AACAATCAAAGGCTGGGAGAAACCGCATATCGTCTGACAGTCAACAAGATGTCCCATCAA 2152
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1646 AACCATCAAAGGCTGGGAGAAACCGCATATCGTCTGAGAATCAACAAGATGTCCCATCAA 1705
Query 2153 CTAAGAAGCTAAAGAAAACCATTCAGTTCAAACCACTGGCTTCTGACAAGAAAACAAACC 2212
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1706 CTAAGAAGCTAAAGAAAACCATTCAGTTCAAACCAATGGCTTCTGACAAGAAAACAAAGC 1765
Query 2213 AAGATGCAACAAAGAGATCAAGTCTTGC-ACCTTTAAATCCAGTAAGAGACCAA--TG-T 2268
|||| |||||||||||||||| |||||| || ||||| |||||| ||||||||| || |
Sbjct 1766 AAGAAGCAACAAAGAGATCAACTCTTGCCACATTTAA-TCCAGTGAGAGACCAAGGTGGT 1824
Query 2269 CGAGTTCCCATCAATGCCAAACCAGCTATAGTTCAA-CAAGAAAAGAAGACGGGTCCATC 2327
| ||| |||||||||||||||||||||||||||||| || |||||||||| || |||||
Sbjct 1825 CCAGTCCCCATCAATGCCAAACCAGCTATAGTTCAATCA-GAAAAGAAGAAGGCCCCATC 1883
Query 2328 TGCAATGGTAGTTGAGCCAACAATGCTGGTCATGATGTTTCCTCCTGGTGA-ATCTCTCC 2386
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1884 TGCAATGGTAGTTGAGCCAACAATGCTGGTCATGATGTTTCCTCCTGGT-ACATCTCTCC 1942
Query 2387 CTTCCATTGATCTGCTTAAGGCGAGGTTTGGACGCTTTGGACAGTTGGATCAATCAGCCA 2446
|||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1943 CTTCCACCGCTCTGCTTAAGGCGAGGTTTGGGCGCTTTGGACAGTTGGATCAATCAGCCA 2002
Query 2447 TCAGAGTTTCCTGGAAATCCTCGATCTGCCGTGTTGGCTTCCTGTATAAACTCGATGCGC 2506
||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||
Sbjct 2003 TCAGAGTTTCCTGGAAATCCTCGATATGCCGTGTTATCTTCAAGTATAAGCTCGATGCGC 2062
Query 2507 AGACTGCCTTAAGATATGTATCAGGAAGCAAATCTCTCTTTGGCAATGTGAATGTGACAT 2566
|||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||
Sbjct 2063 AGACTGCCTTAAGATATGCATCAGGAAGCAACTCTATCTTTGGCAACGTGAATGTGACAT 2122
Query 2567 ACTTTCTCCGTGACATGAAAGCTTCTTCTGCATCCGGAGATCATGAACTGAAGAAAGCCA 2626
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2123 ACTTTCTCCGCGACATGAAAGCTTCTTCTGCATCCGGAGATCATGAACAGAAGAAAGCCA 2182
Query 2627 AGAGGCCCAAGACAGACAAACCCATCACTAAACCATTGAACCAGCTA-CTAGAGCAAGCA 2685
|| | | | ||| || | || |||| | |||||||||||||| | |||||| |||||
Sbjct 2183 AG-G-C--A-GAC-GA-A--CCAATCATTGAACCATTGAACCAG-TGGCTAGAGAAAGCA 2232
Query 2686 CCGCCGGTTCACCAACCAAACATCCAGCTCAAGTCTTGTTTGAAAAAACCAGGCAATAAC 2745
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2233 CCGCCAGTTCACCAACCAAACATCCAGCTCAAGTCGTGTTTGAAAAAACCAGGCAATAAC 2292
Query 2746 CGTAATGGTAACCACAGAACAGTACGAGTGAAATTCATGTTGGGTGAGAAAGAAACAGAG 2805
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2293 GGTAATGGTAACCACAGAACAGTACGAGTGAAATTCATGTTGGGTGA-A--GAAACAGAG 2349
Query 2806 TCACCATTTTCGGTTTCG 2823
|||||||||||||||||
Sbjct 2350 ACACCATTTTCGGTTTCG 2367
Score = 1657 bits (897), Expect = 0.0
Identities = 1047/1119 (94%), Gaps = 12/1119 (1%)
Strand=Plus/Plus
Query 409 ATGGAGAAAAGGCGAGTTCCGGACTACAAATCTTTCTTATCCGAATTTGACGATTATGTT 468
|||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||
Sbjct 1 ATGGAGAAAAATCGAGTTCCGGACTACAAATCTTACTTATCCGAGTTTGACCATTATGTT 60
Query 469 GCGAGGGAGAAAATGGGTTCTAGAAATTCG-AAGGCATTGAGCTATGGTTTTGAAGTGGG 527
|| || ||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||
Sbjct 61 GCAAGCGAGAAAATGGGTTCTGGAAATT-GTAAGGCATTGTGCTATGGGTTTGAAGTGGG 119
Query 528 AGATATGGTTTGGGGAAAGGTAAAGTCACATCCATGGTGGCCAGGTCAAATATTCAATGA 587
||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 120 AGATATGGTATGGGGAAAGGTTAAGTCACATCCGTGGTGGCCAGGTCAGATATTCAATGA 179
Query 588 AGCTTTTGCGTCTCCCTCTGTTCGTCGTGTGAAGAAGATGGGTTACGTTCTGGTTGCTTT 647
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 AGCGTTTGCGTCTCCCTCTGTTCGTCGTATGAAGAAGATGGGTTACGTTCTGGTTGCTTT 239
Query 648 CTTTGGGGATAATAGTTATGGATGGTTCGATCCTGCTGAGCTTATCCCTTTTGAACCTCA 707
|||||| |||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 240 CTTTGGAGATAGTAGTTATGGTTGGTTTGATCCTGCTGAGCTTATTCCTTTTGAACCTCA 299
Query 708 TGT-GAAGGAGAAATCACAGCAAACTAGTTC-GGATCACTTTGCAAAAGCTGTGGAAGAA 765
||| | | ||||| || |||||||||||||| || |||||||||||||||||||||||||
Sbjct 300 TGTAGCA-GAGAATTCGCAGCAAACTAGTTCAGG-TCACTTTGCAAAAGCTGTGGAAGAA 357
Query 766 GCTATGAATGAAGTAGGTAGAAGGTCAGCTCTTGGCTTGACTTGTAAATGTCGGAATCAG 825
|||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 358 GCTATGGATGAACTAGGTAGAAGGTCAGCTCTTGGGTTGACTTGTAAGTGTCGGAATCAG 417
Query 826 TATAACTTTAGGCCTATTAATGCTCAAGGTTACTTTGCTGTAGACGTGCCTGATTACGAG 885
||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 418 TATAACTTTGGGCCTACTAATGTTCAAGGTTACTTTGCTGTAGACGTGCCTGATTATGAT 477
Query 886 GTCCAAGCTATTTACTCTTCTAAGCAGATTCAGAAAGCTAGGGATAGTTTTTCATCTGTG 945
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTCCAAGCTGTTTACTCTTCTAAGCAGATTCAGAAAGCTAGGGATAGTTTTTCATCTGTT 537
Query 946 CAAACTCTAGCTTTTGTGAAGCGGTGTGCATTAGCACCTCAAGAGTGTGATACAGACAGC 1005
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CAAACTCTAGCTTTCGTGAAGCGGTGTGCATTAGCACCTCAAGAGTGTGATACAGACAGC 597
Query 1006 TTAAAGTCTTTCCAGAAGAAAGTAGCGGTTTGTGCATTCCGTAGAGCAGTGTTTGAGGAG 1065
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 TTAAAGTCTTTCCAGAAGAAAGTAGCGGTTTGTGCATTCCGTAGGGCAGTGTTTGAGGAG 657
Query 1066 TTTGATGAAACATATGAACAAGCTTTCAGGGCAAGATCTGTATACTGTTTAATGAAGACA 1125
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 658 TTTGATGAAACATATGAACAAGCCTTCAGGGCAAGATCTGTATACTGTTTAGTGAAGACA 717
Query 1126 CATGAACCACTTAATAGAGCACCCCTTCGAGTCCCCTTGAGTGGCTCATTGGTCAGTGCA 1185
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 CATGAACCATTTAATAGAGCACCCCTTCGAGTCCCCTTGACTGGCTCATTGGTCAGTGCA 777
Query 1186 GAAACTCTGGGCAACCCAAAGAGCTAC-ACAAAAGCTATGAATGTAAAGGATTCTACTAA 1244
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 778 GAAACTCTGGGCAACCCAAAGAGCT-CTACAAAAGCTATGAATGTAAAGGATTCTACTAA 836
Query 1245 ACAAGACAAATATCTTCCAAAAAGAAGAGAAGAAGCTGGTGATATGACAGTTCAATTTGG 1304
||| || ||| ||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 837 ACATGAAAAAAATCTTCCCAAAAGAAGAGAGGGAGCTGGTGATATGACAGTTCAATTTGG 896
Query 1305 CCAGGTCCAAGAATCTTCTCAGTTTCAGGGCATCAACGGATCTTCAGCTTGGGATCGTCT 1364
|||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| | |
Sbjct 897 CCAGGTCCAAGAATCTTCTCAGATTCAGGGCAGCAACAGATCTTCAGCTGGGGATCATGT 956
Query 1365 ACTCCAGAGAAGGACTCCATGT-CTCCAAACTCCCAGGAAACATGAGCAGACTGGGCTTG 1423
||| ||||||||||||||| | | ||||||||||||||||||||||||||| |||||||
Sbjct 957 ACTGCAGAGAAGGACTCCACATAC-CCAAACTCCCAGGAAACATGAGCAGACCGGGCTTG 1015
Query 1424 TCAGCATGAACTTCACCTCTTCAAGTGGTAATATTCCTGGAAAGAAATCCTCTGTTTCAA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCAGCATGAACTTCACCTCTTCAAGTGGTAATATTCCTGGAAAGAAATCCTCTGTTTCAA 1075
Query 1484 AGCTCTCTCGTGATGATGACAAGGGTTT-AGCTCAAGAG 1521
|||||||||| ||||||||||||||||| | |||| |||
Sbjct 1076 AGCTCTCTCGGGATGATGACAAGGGTTTCA-CTCATGAG 1113
Score = 281 bits (152), Expect = 2e-74
Identities = 183/198 (92%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 2822 CGATTCTTCCTCTCTCTTCACAAGACTCAGAACCAAAGCCTGTAAATAACCAAGTGGACC 2881
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 2468 CGATTCTTCCTCTCTCTTCACAAGACTCAGAACCAAAGCCTGTTAATAATCAAGTGAACC 2527
Query 2882 ACGTCGAGCCACC-ACTAGACCCGTCACAGCTTAAGGTGGACATCTCCCTGCAGATGATG 2940
||||||||||||| | || ||||||| ||||||| |||||||| |||||||||||||||
Sbjct 2528 ACGTCGAGCCACCTA-TAAACCCGTCGCAGCTTACCGTGGACATTTCCCTGCAGATGATG 2586
Query 2941 GAGCTGTTAACAAGGTGTAACGATGCTGTGGCCAACGTCACGGGTTTGTTGGGTTACGTC 3000
||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||
Sbjct 2587 GAGCTGTTAACAAGGTGTAACGATGTTGTGTCTAACGTCACGTGTTTGTTGGGTTACGTC 2646
Query 3001 CCTTATCATTCCTTATGA 3018
|||||||||| |||||||
Sbjct 2647 CCTTATCATTTCTTATGA 2664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115299171615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5