BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05440.1
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887942 jgi|Araly1|887942|Al_scaffold_0304_1 616 5e-176
Ahg952027 jgi|Araly1|952027|scaffold_30400004.1 462 6e-130
Ahg903386 jgi|Araly1|903386|Al_scaffold_0003_514 455 1e-127
> Ahg887942 jgi|Araly1|887942|Al_scaffold_0304_1
Length=369
Score = 616 bits (333), Expect = 5e-176
Identities = 358/370 (97%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTATCAGCTCAAGATCTCAACTCCATC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 1 ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTCTCAGCTCAAGATCTCGACTCCGTC 60
Query 61 AATCTTTTGTTCAGACCAACTGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCTTTTGTTCAGACCAACAGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC 120
Query 121 AAGCAAGTCACTCCAGCTGCTGCATG-GGATAAGAAATTCTTACGGTGGAATTATCGTAT 179
|||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||
Sbjct 121 AAGCAAGTCACTCCAGCTGCTGCATGCGG-TAAGAAACTCTTACGGTGGAATTACCGTAT 179
Query 180 GAAATTCTATATAGAAGATGACAAGGTTCGAAGGAATGAGTCAGTGTTTGTGTTTCAAAT 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 GAAATTCTATATAGAAGATGACAAGGTTCGAAGGAATGAGTCAGTGCTTGTGTTTCAAAT 239
Query 240 CAAGTGTAAGAGATTTTTCGGGTCCGACCAAGTCGTTGGGAAACTTTTCATACCGGGTTG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 CAAGTGTAAGAGATTTTTCGGGTCCGACCAAGTCGTTGGGAAACTTTTCGTACCGGGTTG 299
Query 300 TAGATTAGGAGTTTGGGGAAATATTAGACATGAGCCATCAGCTCCTTGTGAAGATGATAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TAGATTAGGAGTTTGGGGAAATATTAGACATGAGCCATCAGCTCCTTGTGAAGACGATAT 359
Query 360 CTATGCTTAG 369
|||||| |||
Sbjct 360 CTATGCGTAG 369
> Ahg952027 jgi|Araly1|952027|scaffold_30400004.1
Length=397
Score = 462 bits (250), Expect = 6e-130
Identities = 281/296 (95%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTATCAGCTCAAGATCTCAACTCCATC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 21 ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTCTCAGCTCAAGATCTCGACTCCGTC 80
Query 61 AATCTTTTGTTCAGACCAACTGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 81 AATCTTTTGTTCAGACCAACAGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC 140
Query 121 AAGCAAGTCACTCCAGCTGCTGCATG-GGATAAGAAATTCTTACGGTGGAATTATCGTAT 179
|||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||
Sbjct 141 AAGCAAGTCACTCCAGCTGCTGCATGCGG-TAAGAAACTCTTACGGTGGAATTACCGTAT 199
Query 180 GAAATTCTATATAGAAGATGACAAGGTTCGAAGGAATGAGTCAGTGTTTGTGTTTCAAAT 239
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 200 GAAATTCTATATAGAAGATGACAAATTTCGAAGGAATGACTCAGTGTTTGTGTTTCAAAT 259
Query 240 CAAGTGTAAGAGATTTTTCGGGTCCGACCAAGTCGTTGGGAAACTTTTCATACCGG 295
|||||||||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 260 CAAGTGTAAGAGATTTTTCGGGTCTGACCAAGTCGTTGGGAAAGTTTTTGTACCGG 315
> Ahg903386 jgi|Araly1|903386|Al_scaffold_0003_514
Length=327
Score = 455 bits (246), Expect = 1e-127
Identities = 279/295 (95%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTATCAGCTCAAGATCTCAACTCCATC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 1 ATGGAGTATTATCAACCGGTGGAGATTAACGTTCTCTCAGCTCAAGATCTCGACTCCGTC 60
Query 61 AATCTTTTGTTCAGACCAACTGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCTTTTGTTCAGACCAACAGTCTATGTTTCCGTCTCGGTCACACGTGGTTCACGTGAC 120
Query 121 AAGCAAGTCACTCCAGCTGCTGCATG-GGATAAGAAATTCTTACGGTGGAATTATCGTAT 179
|||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||
Sbjct 121 AAGCAAGTCACTCCAGCTGCTGCATGCGG-TAAGAAACTCTTACGGTGGAATTACCGTAT 179
Query 180 GAAATTCTATATAGAAGATGACAAGGTTCGAAGGAATGAGTCAGTGTTTGTGTTTCAAAT 239
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 180 GAAATTCTATATAGAAGATGACAAATTTCGAAGGAATGACTCAGTGTTTGTGTTTCAAAT 239
Query 240 CAAGTGTAAGAGATTTTTCGGGTCCGACCAAGTCGTTGGGAAACTTTTCATACCG 294
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 240 AAAGTGTAAGAGATTTTTCGGGTCTGACCAAGTCGTTGGGAAAGTTTTTGTACCG 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13163678205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5